Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02150

Experiment: PYE with Tetracycline 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02149 and CCNA_02150 are separated by 17 nucleotidesCCNA_02150 and CCNA_02151 are separated by 37 nucleotidesCCNA_02151 and CCNA_02152 are separated by 97 nucleotides CCNA_02149: CCNA_02149 - 1-deoxy-D-xylulose 5-phosphate synthase, at 2,305,334 to 2,307,256 _02149 CCNA_02150: CCNA_02150 - dimethylallyltransferase/geranyltranstransferase , at 2,307,274 to 2,308,158 _02150 CCNA_02151: CCNA_02151 - exodeoxyribonuclease VII small subunit, at 2,308,196 to 2,308,450 _02151 CCNA_02152: CCNA_02152 - phosphoglycerate mutase, at 2,308,548 to 2,309,207 _02152 Position (kb) 2307 2308 2309Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2308.187 kb on + strandat 2308.245 kb on - strand, within CCNA_02151at 2308.265 kb on - strand, within CCNA_02151at 2308.280 kb on - strand, within CCNA_02151at 2308.342 kb on + strand, within CCNA_02151at 2308.345 kb on - strand, within CCNA_02151at 2308.345 kb on - strand, within CCNA_02151at 2308.345 kb on - strand, within CCNA_02151at 2308.357 kb on + strand, within CCNA_02151at 2308.385 kb on - strand, within CCNA_02151at 2308.421 kb on - strand, within CCNA_02151at 2308.448 kb on - strandat 2308.472 kb on + strandat 2308.478 kb on - strandat 2308.485 kb on - strandat 2308.507 kb on + strandat 2308.515 kb on - strandat 2308.668 kb on - strand, within CCNA_02152at 2308.772 kb on - strand, within CCNA_02152at 2308.788 kb on - strand, within CCNA_02152at 2308.788 kb on - strand, within CCNA_02152at 2308.877 kb on - strand, within CCNA_02152at 2308.887 kb on - strand, within CCNA_02152at 2308.952 kb on + strand, within CCNA_02152at 2308.977 kb on - strand, within CCNA_02152at 2309.000 kb on - strand, within CCNA_02152at 2309.000 kb on - strand, within CCNA_02152at 2309.010 kb on - strand, within CCNA_02152at 2309.010 kb on - strand, within CCNA_02152at 2309.010 kb on - strand, within CCNA_02152at 2309.011 kb on - strand, within CCNA_02152at 2309.046 kb on - strand, within CCNA_02152at 2309.051 kb on - strand, within CCNA_02152at 2309.066 kb on - strand, within CCNA_02152at 2309.086 kb on - strand, within CCNA_02152at 2309.102 kb on + strand, within CCNA_02152at 2309.133 kb on - strand, within CCNA_02152at 2309.133 kb on - strand, within CCNA_02152

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml
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2,308,187 + +0.2
2,308,245 - CCNA_02151 0.19 +0.7
2,308,265 - CCNA_02151 0.27 +1.5
2,308,280 - CCNA_02151 0.33 +1.4
2,308,342 + CCNA_02151 0.57 -2.5
2,308,345 - CCNA_02151 0.58 +1.6
2,308,345 - CCNA_02151 0.58 +2.1
2,308,345 - CCNA_02151 0.58 +1.9
2,308,357 + CCNA_02151 0.63 -1.2
2,308,385 - CCNA_02151 0.74 +1.2
2,308,421 - CCNA_02151 0.88 +0.9
2,308,448 - +3.3
2,308,472 + -0.1
2,308,478 - +0.4
2,308,485 - +0.2
2,308,507 + -1.3
2,308,515 - +0.2
2,308,668 - CCNA_02152 0.18 +0.2
2,308,772 - CCNA_02152 0.34 -0.0
2,308,788 - CCNA_02152 0.36 -3.1
2,308,788 - CCNA_02152 0.36 -1.1
2,308,877 - CCNA_02152 0.50 +0.1
2,308,887 - CCNA_02152 0.51 -2.4
2,308,952 + CCNA_02152 0.61 -1.0
2,308,977 - CCNA_02152 0.65 -0.8
2,309,000 - CCNA_02152 0.68 -0.4
2,309,000 - CCNA_02152 0.68 -2.1
2,309,010 - CCNA_02152 0.70 +0.4
2,309,010 - CCNA_02152 0.70 -2.5
2,309,010 - CCNA_02152 0.70 -1.6
2,309,011 - CCNA_02152 0.70 -2.0
2,309,046 - CCNA_02152 0.75 -1.1
2,309,051 - CCNA_02152 0.76 -0.7
2,309,066 - CCNA_02152 0.78 -3.7
2,309,086 - CCNA_02152 0.82 -2.4
2,309,102 + CCNA_02152 0.84 -2.6
2,309,133 - CCNA_02152 0.89 -0.3
2,309,133 - CCNA_02152 0.89 +0.3

Or see this region's nucleotide sequence