Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01906

Experiment: PYE with Tetracycline 0.00005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.00005 mg/ml
2,049,526	+		CCNA_01905	0.72	-1.1
2,049,571	-		CCNA_01905	0.74	-1.0
2,049,618	-		CCNA_01905	0.75	-0.7
2,049,635	+		CCNA_01905	0.75	-1.6
2,049,679	-		CCNA_01905	0.77	-1.6
2,049,685	-		CCNA_01905	0.77	-1.5
2,049,745	-		CCNA_01905	0.79	+0.2
2,049,747	+		CCNA_01905	0.79	-0.3
2,049,750	-		CCNA_01905	0.79	-2.9
2,049,750	-		CCNA_01905	0.79	+0.1
2,049,757	-		CCNA_01905	0.79	-2.2
2,049,811	+		CCNA_01905	0.80	-0.1
2,049,812	-		CCNA_01905	0.80	+1.8
2,049,819	-		CCNA_01905	0.81	-2.5
2,049,819	-		CCNA_01905	0.81	-0.2
2,049,836	-		CCNA_01905	0.81	-0.7
2,049,836	-		CCNA_01905	0.81	-1.2
2,049,871	-		CCNA_01905	0.82	-1.8
2,049,908	-		CCNA_01905	0.83	+0.5
2,049,931	-		CCNA_01905	0.84	-1.0
2,049,931	-		CCNA_01905	0.84	-1.7
2,049,936	-		CCNA_01905	0.84	-2.6
2,049,990	+		CCNA_01905	0.85	-1.3
2,050,041	-		CCNA_01905	0.87	+0.2
2,050,062	+		CCNA_01905	0.87	+2.3
2,050,159	-		CCNA_01905	0.90	+0.0
2,050,201	+				+0.3
2,050,201	+				-1.9
2,050,207	+				-1.7
2,050,207	+				+0.7
2,050,209	-				-1.2
2,050,209	-				-1.9
2,050,249	+				+1.7
2,050,251	-				-0.7
2,050,279	-				-1.2
2,050,341	+				+0.2
2,050,341	+				+0.1
2,050,341	+				+0.0
2,050,341	+				-1.4
2,050,344	-				-0.4
2,050,355	+				-2.0
2,050,363	-				-1.1
2,050,390	+				-1.4
2,050,401	+				-0.8
2,050,410	-				+2.6
2,050,432	+				-0.4
2,050,440	-				+0.1
2,050,442	+				+0.7
2,050,443	+				+0.2
2,050,447	+				+0.7
2,050,450	-				+0.6
2,050,450	-				-0.1
2,050,454	-				+0.0
2,050,454	-				-1.8
2,050,491	-				-0.4
2,050,502	+				-0.2
2,050,510	+				+0.6
2,050,553	+				-0.1
2,050,561	-				-0.9
2,050,617	+				-1.6
2,050,641	+				+0.5
2,050,641	+				-0.3
2,050,649	-				-1.5
2,050,649	-				-0.9
2,050,649	-				+1.4
2,050,649	-				-0.1
2,050,649	-				+0.5
2,050,672	+				-1.3
2,050,672	+				-1.2
2,050,678	+				-3.2
2,050,686	-				-1.1
2,050,691	-				-0.7
2,050,721	+		CCNA_01906	0.11	+1.2
2,050,734	-		CCNA_01906	0.12	+0.6
2,050,763	-		CCNA_01906	0.14	-1.3
2,050,787	-		CCNA_01906	0.15	-1.2
2,050,796	+		CCNA_01906	0.16	-0.3
2,050,816	+		CCNA_01906	0.17	-0.0
2,050,816	+		CCNA_01906	0.17	+0.9
2,050,824	-		CCNA_01906	0.17	-0.1
2,050,835	+		CCNA_01906	0.18	-0.5
2,050,872	-		CCNA_01906	0.20	+2.1
2,050,893	+		CCNA_01906	0.21	-2.6
2,050,923	+		CCNA_01906	0.23	-1.4
2,050,931	-		CCNA_01906	0.23	-0.9
2,050,959	-		CCNA_01906	0.25	-1.0
2,050,959	-		CCNA_01906	0.25	-3.0
2,050,965	-		CCNA_01906	0.25	-1.3
2,050,972	+		CCNA_01906	0.25	-0.4
2,051,017	-		CCNA_01906	0.28	-1.9
2,051,018	+		CCNA_01906	0.28	-0.2
2,051,019	-		CCNA_01906	0.28	-0.4
2,051,026	-		CCNA_01906	0.28	+0.6
2,051,026	-		CCNA_01906	0.28	+0.0
2,051,084	+		CCNA_01906	0.32	-0.6
2,051,101	+		CCNA_01906	0.33	-0.7
2,051,150	+		CCNA_01906	0.35	+0.3
2,051,170	+		CCNA_01906	0.36	-1.8
2,051,170	+		CCNA_01906	0.36	+1.6
2,051,180	+		CCNA_01906	0.37	+1.3
2,051,180	+		CCNA_01906	0.37	+1.2
2,051,185	+		CCNA_01906	0.37	-0.5
2,051,188	-		CCNA_01906	0.37	+0.6
2,051,226	+		CCNA_01906	0.40	-1.3
2,051,229	+		CCNA_01906	0.40	-2.1
2,051,234	-		CCNA_01906	0.40	+0.2
2,051,249	+		CCNA_01906	0.41	-0.6
2,051,253	-		CCNA_01906	0.41	+0.4
2,051,260	+		CCNA_01906	0.42	-2.4
2,051,260	+		CCNA_01906	0.42	-2.4
2,051,268	-		CCNA_01906	0.42	+0.6
2,051,268	-		CCNA_01906	0.42	-0.5
2,051,268	-		CCNA_01906	0.42	-1.9
2,051,331	+		CCNA_01906	0.45	-1.3
2,051,341	+		CCNA_01906	0.46	-3.2
2,051,348	+		CCNA_01906	0.46	+0.4
2,051,349	-		CCNA_01906	0.46	-0.1
2,051,387	+		CCNA_01906	0.49	+1.1
2,051,430	+		CCNA_01906	0.51	+0.1
2,051,430	+		CCNA_01906	0.51	-1.5
2,051,438	-		CCNA_01906	0.51	-1.6
2,051,438	-		CCNA_01906	0.51	-0.6
2,051,438	-		CCNA_01906	0.51	-2.3
2,051,482	-		CCNA_01906	0.54	+0.9
2,051,487	-		CCNA_01906	0.54	-1.1
2,051,535	-		CCNA_01906	0.57	-2.5
2,051,537	+		CCNA_01906	0.57	-1.0
2,051,540	-		CCNA_01906	0.57	-1.2
2,051,542	+		CCNA_01906	0.57	-1.4
2,051,564	+		CCNA_01906	0.59	+0.9
2,051,595	-		CCNA_01906	0.60	-0.3
2,051,610	-		CCNA_01906	0.61	+0.9
2,051,618	-		CCNA_01906	0.62	-2.0
2,051,674	-		CCNA_01906	0.65	-3.4
2,051,686	+		CCNA_01906	0.65	-0.7
2,051,686	-		CCNA_01906	0.65	-1.6
2,051,749	+		CCNA_01906	0.69	-1.7
2,051,789	+		CCNA_01906	0.71	-0.7
2,051,833	+		CCNA_01906	0.74	-0.6
2,051,833	+		CCNA_01906	0.74	-1.6
2,051,833	+		CCNA_01906	0.74	-1.0
2,051,833	+		CCNA_01906	0.74	-0.2
2,051,833	+		CCNA_01906	0.74	+0.9
2,051,833	+		CCNA_01906	0.74	-0.6
2,051,833	+		CCNA_01906	0.74	-1.8
2,051,841	-		CCNA_01906	0.74	+1.2
2,051,841	-		CCNA_01906	0.74	-2.1
2,051,841	-		CCNA_01906	0.74	-0.1
2,051,882	-		CCNA_01906	0.76	-1.1
2,051,915	+		CCNA_01906	0.78	-2.6
2,051,950	+		CCNA_01906	0.80	-1.4
2,051,964	-		CCNA_01906	0.81	+0.5
2,051,964	-		CCNA_01906	0.81	-0.8
2,051,984	+		CCNA_01906	0.82	-0.8
2,051,991	+		CCNA_01906	0.82	-0.6
2,051,992	-		CCNA_01906	0.83	-1.8
2,052,013	+		CCNA_01906	0.84	+0.2
2,052,013	+		CCNA_01906	0.84	-0.1
2,052,027	+		CCNA_01906	0.84	-1.8
2,052,027	+		CCNA_01906	0.84	-0.4
2,052,035	-		CCNA_01906	0.85	-2.9
2,052,040	+		CCNA_01906	0.85	-1.4
2,052,040	+		CCNA_01906	0.85	-3.0
2,052,040	+		CCNA_01906	0.85	-0.5
2,052,048	-		CCNA_01906	0.86	+0.9
2,052,048	-		CCNA_01906	0.86	-1.3
2,052,059	+		CCNA_01906	0.86	-1.0
2,052,077	-		CCNA_01906	0.87	-1.4
2,052,094	-		CCNA_01906	0.88	-2.2
2,052,137	+				-1.3
2,052,146	+				-0.4
2,052,149	-				-0.6
2,052,232	+				+1.1
2,052,240	-				-0.8
2,052,240	-				+1.3
2,052,240	-				-0.5
2,052,240	-				+0.6
2,052,262	-				-0.7
2,052,292	+				-1.4
2,052,292	+				-0.7
2,052,367	+				+0.9
2,052,375	-				-1.3
2,052,375	-				-0.9
2,052,390	-				+2.5
2,052,395	-				-0.4
2,052,395	-				-0.5
2,052,395	-				-0.5
2,052,395	-				-1.3
2,052,404	+				-1.9
2,052,404	+				-1.1
2,052,404	+				+0.3
2,052,438	-		CCNA_01907	0.12	-0.1
2,052,453	-		CCNA_01907	0.14	-1.5
2,052,487	+		CCNA_01907	0.19	-1.2
2,052,495	-		CCNA_01907	0.20	-0.4
2,052,506	+		CCNA_01907	0.21	-2.1
2,052,552	+		CCNA_01907	0.27	-1.3
2,052,558	-		CCNA_01907	0.28	-0.5
2,052,593	-		CCNA_01907	0.33	-1.2
2,052,633	+		CCNA_01907	0.38	-2.4
2,052,633	+		CCNA_01907	0.38	-1.7
2,052,641	-		CCNA_01907	0.39	+0.6
2,052,646	-		CCNA_01907	0.40	+0.0
2,052,651	-		CCNA_01907	0.40	-0.5
2,052,651	-		CCNA_01907	0.40	-1.2
2,052,675	-		CCNA_01907	0.43	-1.2
2,052,675	-		CCNA_01907	0.43	-0.1
2,052,700	+		CCNA_01907	0.47	-2.1
2,052,716	-		CCNA_01907	0.49	-2.4
2,052,746	-		CCNA_01907	0.53	-0.8
2,052,749	+		CCNA_01907	0.53	-0.9
2,052,749	+		CCNA_01907	0.53	-2.0
2,052,749	+		CCNA_01907	0.53	+0.4
2,052,749	+		CCNA_01907	0.53	-1.1
2,052,749	+		CCNA_01907	0.53	+0.2
2,052,749	+		CCNA_01907	0.53	-1.8
2,052,757	-		CCNA_01907	0.54	-0.4
2,052,757	-		CCNA_01907	0.54	+0.2
2,052,757	-		CCNA_01907	0.54	-0.1
2,052,757	-		CCNA_01907	0.54	-1.6
2,052,757	-		CCNA_01907	0.54	+0.0
2,052,793	+		CCNA_01907	0.59	-0.3
2,052,804	+		CCNA_01907	0.60	+0.2
2,052,858	+		CCNA_01907	0.67	-0.3
2,052,874	+		CCNA_01907	0.70	-0.6
2,052,884	+		CCNA_01907	0.71	-1.5
2,052,909	+		CCNA_01907	0.74	-1.9
2,052,915	-		CCNA_01907	0.75	-0.8
2,052,917	-		CCNA_01907	0.75	+0.1
2,052,985	-		CCNA_01907	0.84	-1.1
2,053,027	-		CCNA_01907	0.90	-0.5
2,053,082	-				-0.4
2,053,126	+				-1.7
2,053,134	-				-0.4
2,053,134	-				+1.2
2,053,140	-				-0.7
2,053,155	+				-0.3
2,053,240	+		CCNA_01908	0.17	-0.9
2,053,290	-		CCNA_01908	0.23	-2.1