Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01227

Experiment: PYE with Tetracycline 0.00005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.00005 mg/ml
1,353,057	-		CCNA_01225	0.89	+0.1
1,353,057	-		CCNA_01225	0.89	+0.5
1,353,057	-		CCNA_01225	0.89	-0.9
1,353,077	-				+1.0
1,353,083	-				-0.3
1,353,121	+				-1.7
1,353,125	+				-1.2
1,353,129	-				-1.2
1,353,134	-				+1.0
1,353,150	+				-1.1
1,353,174	+				+0.1
1,353,182	-				+1.2
1,353,182	-				+1.7
1,353,192	-				-2.1
1,353,192	-				-1.0
1,353,200	+				-0.7
1,353,225	-				-0.3
1,353,230	-				-0.7
1,353,230	-				-0.3
1,353,254	+		CCNA_01226	0.11	-0.6
1,353,262	-		CCNA_01226	0.12	-0.7
1,353,379	-		CCNA_01226	0.30	-1.1
1,353,385	+		CCNA_01226	0.31	-1.7
1,353,412	-		CCNA_01226	0.36	-0.8
1,353,468	-		CCNA_01226	0.45	-1.1
1,353,468	-		CCNA_01226	0.45	+1.6
1,353,480	-		CCNA_01226	0.46	+0.1
1,353,480	-		CCNA_01226	0.46	-0.6
1,353,480	-		CCNA_01226	0.46	-1.6
1,353,485	-		CCNA_01226	0.47	-0.9
1,353,491	+		CCNA_01226	0.48	-1.3
1,353,521	-		CCNA_01226	0.53	-1.1
1,353,560	-		CCNA_01226	0.59	-1.6
1,353,603	-		CCNA_01226	0.66	-1.4
1,353,604	+		CCNA_01226	0.66	+1.0
1,353,631	+		CCNA_01226	0.70	-0.8
1,353,638	-		CCNA_01226	0.71	-1.6
1,353,638	-		CCNA_01226	0.71	+1.7
1,353,651	-		CCNA_01226	0.73	-1.9
1,353,660	-		CCNA_01226	0.75	-0.6
1,353,713	+		CCNA_01226	0.83	-0.7
1,353,736	+		CCNA_01226	0.87	-0.0
1,353,817	-				-1.9
1,353,817	-				-0.4
1,353,829	+				-0.1
1,353,829	+				-0.1
1,353,852	+				-0.8
1,353,874	+				-1.7
1,353,928	+				-0.1
1,353,936	-				+0.0
1,353,975	-				+0.2
1,353,989	+				+0.8
1,354,011	+				-1.8
1,354,022	+				-2.4
1,354,082	+				+2.4
1,354,089	+		CCNA_01227	0.10	+0.4
1,354,089	+		CCNA_01227	0.10	-1.2
1,354,089	+		CCNA_01227	0.10	+0.3
1,354,094	+		CCNA_01227	0.11	+0.8
1,354,097	-		CCNA_01227	0.11	-2.5
1,354,097	-		CCNA_01227	0.11	-2.9
1,354,102	-		CCNA_01227	0.11	-0.8
1,354,205	-		CCNA_01227	0.21	+0.5
1,354,221	-		CCNA_01227	0.22	-0.8
1,354,253	+		CCNA_01227	0.25	-0.3
1,354,278	+		CCNA_01227	0.28	+1.1
1,354,325	+		CCNA_01227	0.32	-1.7
1,354,325	+		CCNA_01227	0.32	+0.7
1,354,325	+		CCNA_01227	0.32	+0.1
1,354,344	+		CCNA_01227	0.34	-0.9
1,354,344	+		CCNA_01227	0.34	+0.5
1,354,346	+		CCNA_01227	0.34	-0.8
1,354,386	-		CCNA_01227	0.38	-0.5
1,354,386	-		CCNA_01227	0.38	+1.3
1,354,388	+		CCNA_01227	0.38	-1.5
1,354,396	-		CCNA_01227	0.39	-0.9
1,354,432	-		CCNA_01227	0.42	-2.5
1,354,466	+		CCNA_01227	0.45	+0.1
1,354,466	+		CCNA_01227	0.45	+0.7
1,354,466	+		CCNA_01227	0.45	-1.1
1,354,466	+		CCNA_01227	0.45	-0.7
1,354,466	+		CCNA_01227	0.45	-1.1
1,354,466	+		CCNA_01227	0.45	-1.7
1,354,474	-		CCNA_01227	0.46	-1.1
1,354,474	-		CCNA_01227	0.46	-0.9
1,354,479	-		CCNA_01227	0.47	+1.1
1,354,486	-		CCNA_01227	0.47	-1.7
1,354,526	+				+0.7
1,354,526	+		CCNA_01227	0.51	-0.9
1,354,534	-		CCNA_01227	0.52	-0.9
1,354,539	+		CCNA_01227	0.52	+0.2
1,354,539	+		CCNA_01227	0.52	-2.5
1,354,540	-		CCNA_01227	0.52	-0.3
1,354,544	+				+1.3
1,354,544	+		CCNA_01227	0.53	-1.4
1,354,547	-		CCNA_01227	0.53	-1.8
1,354,547	-		CCNA_01227	0.53	-2.1
1,354,560	+		CCNA_01227	0.54	-0.3
1,354,560	+		CCNA_01227	0.54	+0.7
1,354,563	-		CCNA_01227	0.54	-0.5
1,354,568	-		CCNA_01227	0.55	+0.7
1,354,568	-		CCNA_01227	0.55	-1.6
1,354,568	-		CCNA_01227	0.55	-3.1
1,354,570	+		CCNA_01227	0.55	+0.6
1,354,692	+		CCNA_01227	0.67	+1.2
1,354,707	+		CCNA_01227	0.68	-0.4
1,354,707	+		CCNA_01227	0.68	+1.0
1,354,714	+		CCNA_01227	0.69	+0.0
1,354,714	+		CCNA_01227	0.69	+1.0
1,354,714	+		CCNA_01227	0.69	+0.1
1,354,714	+		CCNA_01227	0.69	-1.4
1,354,714	+		CCNA_01227	0.69	-0.6
1,354,714	+		CCNA_01227	0.69	-1.3
1,354,724	+		CCNA_01227	0.70	-1.9
1,354,724	+		CCNA_01227	0.70	+0.9
1,354,732	-		CCNA_01227	0.70	-1.3
1,354,753	+		CCNA_01227	0.72	-1.5
1,354,758	+		CCNA_01227	0.73	+0.4
1,354,758	+		CCNA_01227	0.73	+0.8
1,354,773	-		CCNA_01227	0.74	-1.7
1,354,780	+		CCNA_01227	0.75	+0.3
1,354,833	-		CCNA_01227	0.80	+0.7
1,354,837	+		CCNA_01227	0.80	+0.8
1,354,892	-		CCNA_01227	0.85	+0.3
1,354,933	-		CCNA_01227	0.89	-0.7
1,354,945	+				+0.3
1,354,973	-				-1.5
1,355,081	+				-0.6
1,355,081	+				-0.5
1,355,180	-		CCNA_01228	0.21	+0.8
1,355,194	+		CCNA_01228	0.24	+1.3
1,355,228	-		CCNA_01228	0.29	-1.3
1,355,262	+		CCNA_01228	0.34	-0.8
1,355,275	+		CCNA_01228	0.37	-1.7
1,355,306	+		CCNA_01228	0.41	-1.2
1,355,306	+		CCNA_01228	0.41	-2.0
1,355,306	+		CCNA_01228	0.41	-1.2
1,355,306	+		CCNA_01228	0.41	+0.1
1,355,306	+		CCNA_01228	0.41	-0.0
1,355,306	+		CCNA_01228	0.41	-1.0
1,355,306	+		CCNA_01228	0.41	+1.1
1,355,306	+		CCNA_01228	0.41	-1.6
1,355,311	+		CCNA_01228	0.42	+0.1
1,355,314	-		CCNA_01228	0.43	-1.1
1,355,314	-		CCNA_01228	0.43	-2.0
1,355,314	-		CCNA_01228	0.43	-0.5
1,355,321	+		CCNA_01228	0.44	-2.6
1,355,324	-		CCNA_01228	0.44	-1.1
1,355,368	+		CCNA_01228	0.51	-1.6
1,355,413	+		CCNA_01228	0.58	-0.0
1,355,582	-		CCNA_01228	0.85	+1.7
1,355,604	+		CCNA_01228	0.89	+0.7
1,355,619	+				-0.2
1,355,619	-				+0.4
1,355,718	+				-2.2
1,355,750	-				-1.7
1,355,751	-				+0.5
1,355,765	-				-2.2
1,355,792	+				+0.1
1,355,804	+				-0.7
1,355,812	-		CCNA_01229	0.10	-0.3
1,355,835	-		CCNA_01229	0.12	+0.8
1,355,835	-		CCNA_01229	0.12	+0.8
1,355,848	+		CCNA_01229	0.13	+0.1
1,355,849	-		CCNA_01229	0.13	-2.7
1,355,851	+		CCNA_01229	0.13	+0.3
1,355,884	+		CCNA_01229	0.16	-1.0
1,355,887	-		CCNA_01229	0.16	-1.7
1,355,909	+		CCNA_01229	0.18	-0.3
1,355,965	-		CCNA_01229	0.22	-1.6
1,355,980	+		CCNA_01229	0.23	+1.3
1,355,988	-		CCNA_01229	0.23	-0.9
1,355,988	-		CCNA_01229	0.23	-0.8
1,355,992	+		CCNA_01229	0.24	-0.4