Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00863

Experiment: PYE with Tetracycline 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00862 and CCNA_00863 overlap by 8 nucleotidesCCNA_00863 and CCNA_00864 are separated by 124 nucleotidesCCNA_00864 and CCNA_00865 are separated by 5 nucleotides CCNA_00862: CCNA_00862 - Xylonate dehydratase (EC 4.2.1.82) (from data), at 939,696 to 941,471 _00862 CCNA_00863: CCNA_00863 - xylonolactonase xylC, at 941,464 to 942,333 _00863 CCNA_00864: CCNA_00864 - D-xylose 1-dehydrogenase (EC 1.1.1.175) (from data), at 942,458 to 943,204 _00864 CCNA_00865: CCNA_00865 - alpha-ketoglutaric semialdehyde dehydrogenase xylA, at 943,210 to 944,646 _00865 Position (kb) 941 942 943Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 940.521 kb on - strand, within CCNA_00862at 940.521 kb on - strand, within CCNA_00862at 940.557 kb on + strand, within CCNA_00862at 940.557 kb on + strand, within CCNA_00862at 940.565 kb on - strand, within CCNA_00862at 940.565 kb on - strand, within CCNA_00862at 940.565 kb on - strand, within CCNA_00862at 940.638 kb on + strand, within CCNA_00862at 940.673 kb on - strand, within CCNA_00862at 940.685 kb on - strand, within CCNA_00862at 940.720 kb on + strand, within CCNA_00862at 940.725 kb on + strand, within CCNA_00862at 940.758 kb on - strand, within CCNA_00862at 940.783 kb on - strand, within CCNA_00862at 940.796 kb on - strand, within CCNA_00862at 940.815 kb on - strand, within CCNA_00862at 940.825 kb on - strand, within CCNA_00862at 940.839 kb on - strand, within CCNA_00862at 940.847 kb on - strand, within CCNA_00862at 940.864 kb on + strand, within CCNA_00862at 940.864 kb on + strand, within CCNA_00862at 940.864 kb on + strand, within CCNA_00862at 940.864 kb on + strand, within CCNA_00862at 940.872 kb on - strand, within CCNA_00862at 940.872 kb on - strand, within CCNA_00862at 940.872 kb on - strand, within CCNA_00862at 940.872 kb on - strand, within CCNA_00862at 940.894 kb on - strand, within CCNA_00862at 940.979 kb on - strand, within CCNA_00862at 940.979 kb on - strand, within CCNA_00862at 941.001 kb on + strand, within CCNA_00862at 941.012 kb on - strand, within CCNA_00862at 941.017 kb on - strand, within CCNA_00862at 941.072 kb on - strand, within CCNA_00862at 941.097 kb on + strand, within CCNA_00862at 941.102 kb on + strand, within CCNA_00862at 941.105 kb on - strand, within CCNA_00862at 941.105 kb on - strand, within CCNA_00862at 941.105 kb on - strand, within CCNA_00862at 941.105 kb on - strand, within CCNA_00862at 941.113 kb on - strand, within CCNA_00862at 941.124 kb on + strand, within CCNA_00862at 941.142 kb on - strand, within CCNA_00862at 941.220 kb on + strand, within CCNA_00862at 941.222 kb on + strand, within CCNA_00862at 941.228 kb on - strand, within CCNA_00862at 941.228 kb on - strand, within CCNA_00862at 941.230 kb on - strand, within CCNA_00862at 941.230 kb on - strand, within CCNA_00862at 941.263 kb on + strand, within CCNA_00862at 941.270 kb on - strand, within CCNA_00862at 941.273 kb on + strand, within CCNA_00862at 941.281 kb on - strand, within CCNA_00862at 941.281 kb on - strand, within CCNA_00862at 941.313 kb on + strandat 941.321 kb on - strandat 941.321 kb on - strandat 941.373 kb on + strandat 941.373 kb on - strandat 941.427 kb on - strandat 941.515 kb on + strandat 941.525 kb on + strandat 941.539 kb on + strandat 941.560 kb on + strand, within CCNA_00863at 941.568 kb on - strand, within CCNA_00863at 941.568 kb on - strand, within CCNA_00863at 941.568 kb on - strand, within CCNA_00863at 941.569 kb on - strand, within CCNA_00863at 941.582 kb on + strand, within CCNA_00863at 941.596 kb on + strand, within CCNA_00863at 941.601 kb on + strand, within CCNA_00863at 941.615 kb on + strand, within CCNA_00863at 941.631 kb on + strand, within CCNA_00863at 941.639 kb on - strand, within CCNA_00863at 941.639 kb on - strand, within CCNA_00863at 941.654 kb on - strand, within CCNA_00863at 941.680 kb on + strand, within CCNA_00863at 941.704 kb on + strand, within CCNA_00863at 941.762 kb on + strand, within CCNA_00863at 941.770 kb on - strand, within CCNA_00863at 941.789 kb on - strand, within CCNA_00863at 941.815 kb on - strand, within CCNA_00863at 941.823 kb on + strand, within CCNA_00863at 941.823 kb on + strand, within CCNA_00863at 941.830 kb on + strand, within CCNA_00863at 941.831 kb on - strandat 941.838 kb on - strand, within CCNA_00863at 941.862 kb on + strand, within CCNA_00863at 941.863 kb on + strand, within CCNA_00863at 941.871 kb on - strand, within CCNA_00863at 941.903 kb on - strand, within CCNA_00863at 941.938 kb on + strand, within CCNA_00863at 941.951 kb on - strand, within CCNA_00863at 941.974 kb on - strand, within CCNA_00863at 941.976 kb on - strand, within CCNA_00863at 941.976 kb on - strand, within CCNA_00863at 941.983 kb on + strand, within CCNA_00863at 942.001 kb on - strand, within CCNA_00863at 942.018 kb on - strand, within CCNA_00863at 942.046 kb on + strand, within CCNA_00863at 942.073 kb on - strand, within CCNA_00863at 942.087 kb on - strand, within CCNA_00863at 942.166 kb on + strand, within CCNA_00863at 942.237 kb on + strand, within CCNA_00863at 942.252 kb on + strandat 942.253 kb on + strandat 942.261 kb on - strandat 942.272 kb on - strandat 942.274 kb on + strandat 942.327 kb on - strandat 942.358 kb on + strandat 942.366 kb on - strandat 942.368 kb on + strandat 942.375 kb on + strandat 942.415 kb on - strandat 942.464 kb on - strandat 942.495 kb on + strandat 942.495 kb on + strandat 942.495 kb on + strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.503 kb on - strandat 942.519 kb on + strandat 942.566 kb on - strand, within CCNA_00864at 942.571 kb on - strand, within CCNA_00864at 942.574 kb on - strand, within CCNA_00864at 942.595 kb on - strand, within CCNA_00864at 942.595 kb on - strand, within CCNA_00864at 942.596 kb on - strand, within CCNA_00864at 942.607 kb on - strand, within CCNA_00864at 942.623 kb on - strand, within CCNA_00864at 942.635 kb on - strand, within CCNA_00864at 942.641 kb on - strand, within CCNA_00864at 942.644 kb on + strand, within CCNA_00864at 942.644 kb on + strand, within CCNA_00864at 942.649 kb on + strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.652 kb on - strand, within CCNA_00864at 942.687 kb on + strand, within CCNA_00864at 942.704 kb on + strand, within CCNA_00864at 942.750 kb on - strand, within CCNA_00864at 942.759 kb on - strand, within CCNA_00864at 942.837 kb on + strand, within CCNA_00864at 942.837 kb on + strand, within CCNA_00864at 942.845 kb on - strand, within CCNA_00864at 942.850 kb on - strand, within CCNA_00864at 942.859 kb on + strand, within CCNA_00864at 942.867 kb on - strand, within CCNA_00864at 942.867 kb on - strand, within CCNA_00864at 942.893 kb on + strand, within CCNA_00864at 942.983 kb on - strand, within CCNA_00864at 942.993 kb on - strand, within CCNA_00864at 943.000 kb on + strand, within CCNA_00864at 943.024 kb on + strand, within CCNA_00864at 943.046 kb on + strand, within CCNA_00864at 943.047 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.056 kb on + strand, within CCNA_00864at 943.057 kb on - strand, within CCNA_00864at 943.059 kb on - strand, within CCNA_00864at 943.064 kb on - strand, within CCNA_00864at 943.064 kb on - strand, within CCNA_00864at 943.064 kb on - strand, within CCNA_00864at 943.111 kb on - strand, within CCNA_00864at 943.126 kb on + strand, within CCNA_00864at 943.134 kb on - strandat 943.187 kb on + strandat 943.208 kb on + strandat 943.208 kb on + strandat 943.216 kb on - strandat 943.229 kb on + strandat 943.229 kb on - strandat 943.237 kb on - strandat 943.272 kb on - strandat 943.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml
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940,521 - CCNA_00862 0.46 -2.1
940,521 - CCNA_00862 0.46 +1.0
940,557 + CCNA_00862 0.48 -0.0
940,557 + CCNA_00862 0.48 +1.1
940,565 - CCNA_00862 0.49 -3.0
940,565 - CCNA_00862 0.49 +2.1
940,565 - CCNA_00862 0.49 -1.6
940,638 + CCNA_00862 0.53 +0.6
940,673 - CCNA_00862 0.55 +0.4
940,685 - CCNA_00862 0.56 -1.8
940,720 + CCNA_00862 0.58 +0.7
940,725 + CCNA_00862 0.58 -1.2
940,758 - CCNA_00862 0.60 +0.7
940,783 - CCNA_00862 0.61 +0.1
940,796 - CCNA_00862 0.62 -0.4
940,815 - CCNA_00862 0.63 +0.1
940,825 - CCNA_00862 0.64 -0.4
940,839 - CCNA_00862 0.64 -0.1
940,847 - CCNA_00862 0.65 -0.2
940,864 + CCNA_00862 0.66 +0.7
940,864 + CCNA_00862 0.66 +0.1
940,864 + CCNA_00862 0.66 -1.5
940,864 + CCNA_00862 0.66 -1.2
940,872 - CCNA_00862 0.66 +1.1
940,872 - CCNA_00862 0.66 +0.6
940,872 - CCNA_00862 0.66 +0.0
940,872 - CCNA_00862 0.66 -2.1
940,894 - CCNA_00862 0.67 +1.8
940,979 - CCNA_00862 0.72 -0.6
940,979 - CCNA_00862 0.72 +1.1
941,001 + CCNA_00862 0.73 +0.1
941,012 - CCNA_00862 0.74 -0.8
941,017 - CCNA_00862 0.74 +0.4
941,072 - CCNA_00862 0.77 +0.3
941,097 + CCNA_00862 0.79 -2.0
941,102 + CCNA_00862 0.79 +0.8
941,105 - CCNA_00862 0.79 +0.9
941,105 - CCNA_00862 0.79 -0.5
941,105 - CCNA_00862 0.79 +1.0
941,105 - CCNA_00862 0.79 -0.4
941,113 - CCNA_00862 0.80 -0.0
941,124 + CCNA_00862 0.80 -2.1
941,142 - CCNA_00862 0.81 -0.8
941,220 + CCNA_00862 0.86 +0.4
941,222 + CCNA_00862 0.86 -0.6
941,228 - CCNA_00862 0.86 +1.2
941,228 - CCNA_00862 0.86 +3.2
941,230 - CCNA_00862 0.86 -0.2
941,230 - CCNA_00862 0.86 -0.4
941,263 + CCNA_00862 0.88 -1.1
941,270 - CCNA_00862 0.89 +0.4
941,273 + CCNA_00862 0.89 +1.0
941,281 - CCNA_00862 0.89 +0.2
941,281 - CCNA_00862 0.89 -1.0
941,313 + +3.5
941,321 - +0.6
941,321 - +0.5
941,373 + -1.4
941,373 - +1.4
941,427 - -0.8
941,515 + -1.4
941,525 + +1.2
941,539 + +1.0
941,560 + CCNA_00863 0.11 -1.0
941,568 - CCNA_00863 0.12 +2.0
941,568 - CCNA_00863 0.12 -0.7
941,568 - CCNA_00863 0.12 +1.0
941,569 - CCNA_00863 0.12 +0.5
941,582 + CCNA_00863 0.14 -0.7
941,596 + CCNA_00863 0.15 -2.0
941,601 + CCNA_00863 0.16 -1.3
941,615 + CCNA_00863 0.17 -0.3
941,631 + CCNA_00863 0.19 -0.9
941,639 - CCNA_00863 0.20 +0.4
941,639 - CCNA_00863 0.20 -0.2
941,654 - CCNA_00863 0.22 +0.1
941,680 + CCNA_00863 0.25 +0.5
941,704 + CCNA_00863 0.28 +0.1
941,762 + CCNA_00863 0.34 +1.0
941,770 - CCNA_00863 0.35 -0.5
941,789 - CCNA_00863 0.37 -0.1
941,815 - CCNA_00863 0.40 +0.0
941,823 + CCNA_00863 0.41 -0.6
941,823 + CCNA_00863 0.41 -0.3
941,830 + CCNA_00863 0.42 -1.0
941,831 - +0.6
941,838 - CCNA_00863 0.43 +0.2
941,862 + CCNA_00863 0.46 +0.6
941,863 + CCNA_00863 0.46 -1.2
941,871 - CCNA_00863 0.47 -1.2
941,903 - CCNA_00863 0.50 -1.9
941,938 + CCNA_00863 0.54 -2.4
941,951 - CCNA_00863 0.56 +1.8
941,974 - CCNA_00863 0.59 -1.1
941,976 - CCNA_00863 0.59 -0.5
941,976 - CCNA_00863 0.59 -0.8
941,983 + CCNA_00863 0.60 +0.3
942,001 - CCNA_00863 0.62 -2.2
942,018 - CCNA_00863 0.64 +1.2
942,046 + CCNA_00863 0.67 +0.2
942,073 - CCNA_00863 0.70 -2.4
942,087 - CCNA_00863 0.72 +0.6
942,166 + CCNA_00863 0.81 -1.7
942,237 + CCNA_00863 0.89 -0.6
942,252 + +1.1
942,253 + +0.6
942,261 - -2.3
942,272 - -1.7
942,274 + +0.4
942,327 - -2.3
942,358 + -1.4
942,366 - +0.2
942,368 + +0.7
942,375 + -0.3
942,415 - -0.8
942,464 - -1.0
942,495 + -0.4
942,495 + +1.2
942,495 + -2.2
942,503 - +0.2
942,503 - -1.3
942,503 - -1.3
942,503 - -0.0
942,503 - +1.1
942,503 - -2.4
942,503 - +0.3
942,503 - -0.8
942,503 - +0.2
942,503 - -0.8
942,503 - -1.0
942,519 + -1.9
942,566 - CCNA_00864 0.14 -1.7
942,571 - CCNA_00864 0.15 +0.1
942,574 - CCNA_00864 0.16 +0.6
942,595 - CCNA_00864 0.18 +0.7
942,595 - CCNA_00864 0.18 +0.2
942,596 - CCNA_00864 0.18 -0.1
942,607 - CCNA_00864 0.20 +0.2
942,623 - CCNA_00864 0.22 -0.1
942,635 - CCNA_00864 0.24 -0.6
942,641 - CCNA_00864 0.24 -2.4
942,644 + CCNA_00864 0.25 -0.8
942,644 + CCNA_00864 0.25 +1.2
942,649 + CCNA_00864 0.26 -1.3
942,652 - CCNA_00864 0.26 -2.3
942,652 - CCNA_00864 0.26 -0.7
942,652 - CCNA_00864 0.26 +0.9
942,652 - CCNA_00864 0.26 +0.2
942,687 + CCNA_00864 0.31 +0.2
942,704 + CCNA_00864 0.33 +0.3
942,750 - CCNA_00864 0.39 +1.8
942,759 - CCNA_00864 0.40 -3.0
942,837 + CCNA_00864 0.51 -0.3
942,837 + CCNA_00864 0.51 +1.4
942,845 - CCNA_00864 0.52 -0.6
942,850 - CCNA_00864 0.52 -0.7
942,859 + CCNA_00864 0.54 -0.8
942,867 - CCNA_00864 0.55 -0.7
942,867 - CCNA_00864 0.55 +0.6
942,893 + CCNA_00864 0.58 -1.1
942,983 - CCNA_00864 0.70 -1.1
942,993 - CCNA_00864 0.72 +0.4
943,000 + CCNA_00864 0.73 -1.5
943,024 + CCNA_00864 0.76 -2.0
943,046 + CCNA_00864 0.79 -1.8
943,047 + CCNA_00864 0.79 -0.3
943,056 + CCNA_00864 0.80 -0.3
943,056 + CCNA_00864 0.80 +1.4
943,056 + CCNA_00864 0.80 +1.3
943,056 + CCNA_00864 0.80 +0.8
943,057 - CCNA_00864 0.80 +0.0
943,059 - CCNA_00864 0.80 +0.7
943,064 - CCNA_00864 0.81 -0.3
943,064 - CCNA_00864 0.81 -0.2
943,064 - CCNA_00864 0.81 +1.1
943,111 - CCNA_00864 0.87 -1.0
943,126 + CCNA_00864 0.89 -0.5
943,134 - -0.4
943,187 + +1.4
943,208 + -1.1
943,208 + -1.6
943,216 - +0.3
943,229 + +0.7
943,229 - -1.2
943,237 - -0.4
943,272 - -1.7
943,299 - -3.2

Or see this region's nucleotide sequence