Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00616

Experiment: PYE with Tetracycline 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00615 and CCNA_03924 are separated by 96 nucleotidesCCNA_03924 and CCNA_00616 are separated by 125 nucleotidesCCNA_00616 and CCNA_00617 are separated by 118 nucleotides CCNA_00615: CCNA_00615 - TonB-dependent receptor, at 656,945 to 659,863 _00615 CCNA_03924: CCNA_03924 - hypothetical protein, at 659,960 to 660,031 _03924 CCNA_00616: CCNA_00616 - Lrp-family transcriptional regulator, at 660,157 to 660,612 _00616 CCNA_00617: CCNA_00617 - arginine N-succinyltransferase, beta chain, at 660,731 to 661,774 _00617 Position (kb) 660 661Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 659.160 kb on + strand, within CCNA_00615at 659.186 kb on + strand, within CCNA_00615at 659.194 kb on - strand, within CCNA_00615at 659.211 kb on - strand, within CCNA_00615at 659.240 kb on + strand, within CCNA_00615at 659.245 kb on + strand, within CCNA_00615at 659.248 kb on - strand, within CCNA_00615at 659.256 kb on + strand, within CCNA_00615at 659.297 kb on - strand, within CCNA_00615at 659.299 kb on - strand, within CCNA_00615at 659.345 kb on + strand, within CCNA_00615at 659.353 kb on + strand, within CCNA_00615at 659.353 kb on - strand, within CCNA_00615at 659.366 kb on + strand, within CCNA_00615at 659.369 kb on - strand, within CCNA_00615at 659.371 kb on + strand, within CCNA_00615at 659.374 kb on - strand, within CCNA_00615at 659.374 kb on - strand, within CCNA_00615at 659.397 kb on - strand, within CCNA_00615at 659.434 kb on + strand, within CCNA_00615at 659.526 kb on + strand, within CCNA_00615at 659.553 kb on - strand, within CCNA_00615at 659.564 kb on + strand, within CCNA_00615at 659.564 kb on + strandat 659.564 kb on + strand, within CCNA_00615at 659.572 kb on - strandat 659.572 kb on - strandat 659.574 kb on + strandat 659.579 kb on + strandat 659.592 kb on + strandat 659.600 kb on - strandat 659.615 kb on + strandat 659.630 kb on - strandat 659.695 kb on + strandat 659.695 kb on + strandat 659.695 kb on + strandat 659.703 kb on - strandat 659.718 kb on + strandat 659.740 kb on - strandat 659.740 kb on - strandat 659.740 kb on - strandat 659.756 kb on + strandat 659.805 kb on + strandat 659.805 kb on + strandat 659.813 kb on - strandat 659.819 kb on + strandat 659.837 kb on - strandat 659.853 kb on + strandat 659.853 kb on + strandat 659.861 kb on - strandat 659.861 kb on - strandat 659.861 kb on - strandat 659.878 kb on + strandat 659.886 kb on - strandat 659.889 kb on + strandat 659.889 kb on + strandat 659.889 kb on + strandat 659.897 kb on - strandat 659.897 kb on - strandat 659.898 kb on + strandat 659.899 kb on + strandat 659.899 kb on + strandat 659.907 kb on - strandat 659.907 kb on - strandat 659.907 kb on - strandat 659.907 kb on - strandat 659.907 kb on - strandat 659.910 kb on + strandat 659.910 kb on + strandat 659.918 kb on - strandat 659.918 kb on - strandat 659.918 kb on - strandat 659.987 kb on + strand, within CCNA_03924at 659.987 kb on + strand, within CCNA_03924at 659.987 kb on + strand, within CCNA_03924at 659.987 kb on + strand, within CCNA_03924at 659.987 kb on + strand, within CCNA_03924at 659.987 kb on + strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 659.995 kb on - strand, within CCNA_03924at 660.016 kb on + strand, within CCNA_03924at 660.026 kb on + strandat 660.034 kb on - strandat 660.036 kb on - strandat 660.072 kb on - strandat 660.107 kb on + strandat 660.155 kb on + strandat 660.162 kb on + strandat 660.179 kb on + strandat 660.186 kb on - strandat 660.187 kb on - strandat 660.273 kb on - strand, within CCNA_00616at 660.288 kb on + strand, within CCNA_00616at 660.291 kb on + strand, within CCNA_00616at 660.311 kb on + strand, within CCNA_00616at 660.324 kb on - strand, within CCNA_00616at 660.327 kb on + strand, within CCNA_00616at 660.359 kb on + strand, within CCNA_00616at 660.369 kb on + strand, within CCNA_00616at 660.412 kb on - strand, within CCNA_00616at 660.429 kb on + strand, within CCNA_00616at 660.453 kb on + strand, within CCNA_00616at 660.468 kb on + strand, within CCNA_00616at 660.476 kb on + strand, within CCNA_00616at 660.478 kb on - strand, within CCNA_00616at 660.482 kb on + strand, within CCNA_00616at 660.483 kb on - strand, within CCNA_00616at 660.484 kb on - strand, within CCNA_00616at 660.490 kb on - strand, within CCNA_00616at 660.496 kb on + strand, within CCNA_00616at 660.509 kb on - strand, within CCNA_00616at 660.553 kb on + strand, within CCNA_00616at 660.553 kb on + strand, within CCNA_00616at 660.561 kb on - strand, within CCNA_00616at 660.612 kb on - strandat 660.709 kb on - strandat 660.771 kb on - strandat 660.773 kb on + strandat 660.814 kb on + strandat 660.820 kb on - strandat 660.826 kb on - strandat 660.842 kb on + strand, within CCNA_00617at 660.875 kb on + strand, within CCNA_00617at 660.875 kb on + strand, within CCNA_00617at 660.894 kb on + strand, within CCNA_00617at 660.904 kb on + strand, within CCNA_00617at 660.904 kb on + strand, within CCNA_00617at 660.904 kb on + strand, within CCNA_00617at 660.907 kb on - strand, within CCNA_00617at 660.938 kb on - strand, within CCNA_00617at 660.977 kb on - strand, within CCNA_00617at 661.003 kb on + strand, within CCNA_00617at 661.003 kb on + strand, within CCNA_00617at 661.011 kb on - strand, within CCNA_00617at 661.013 kb on + strand, within CCNA_00617at 661.019 kb on + strand, within CCNA_00617at 661.021 kb on + strand, within CCNA_00617at 661.021 kb on - strand, within CCNA_00617at 661.022 kb on + strand, within CCNA_00617at 661.030 kb on - strand, within CCNA_00617at 661.030 kb on - strand, within CCNA_00617at 661.043 kb on + strand, within CCNA_00617at 661.077 kb on - strand, within CCNA_00617at 661.086 kb on + strand, within CCNA_00617at 661.094 kb on - strand, within CCNA_00617at 661.103 kb on + strand, within CCNA_00617at 661.123 kb on + strand, within CCNA_00617at 661.144 kb on - strand, within CCNA_00617at 661.176 kb on + strand, within CCNA_00617at 661.212 kb on - strand, within CCNA_00617at 661.225 kb on - strand, within CCNA_00617at 661.245 kb on + strand, within CCNA_00617at 661.248 kb on - strand, within CCNA_00617at 661.252 kb on + strand, within CCNA_00617at 661.252 kb on + strand, within CCNA_00617at 661.252 kb on + strand, within CCNA_00617at 661.252 kb on + strand, within CCNA_00617at 661.252 kb on - strand, within CCNA_00617at 661.260 kb on - strand, within CCNA_00617at 661.260 kb on - strand, within CCNA_00617at 661.260 kb on - strand, within CCNA_00617at 661.260 kb on - strand, within CCNA_00617at 661.270 kb on - strand, within CCNA_00617at 661.288 kb on + strand, within CCNA_00617at 661.288 kb on + strand, within CCNA_00617at 661.288 kb on + strand, within CCNA_00617at 661.293 kb on + strand, within CCNA_00617at 661.296 kb on - strand, within CCNA_00617at 661.296 kb on - strand, within CCNA_00617at 661.382 kb on - strand, within CCNA_00617at 661.402 kb on - strand, within CCNA_00617at 661.441 kb on + strand, within CCNA_00617at 661.449 kb on - strand, within CCNA_00617at 661.453 kb on + strand, within CCNA_00617at 661.483 kb on + strand, within CCNA_00617at 661.514 kb on + strand, within CCNA_00617at 661.541 kb on - strand, within CCNA_00617at 661.592 kb on + strand, within CCNA_00617at 661.592 kb on + strand, within CCNA_00617at 661.600 kb on - strand, within CCNA_00617at 661.600 kb on - strand, within CCNA_00617

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml
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659,160 + CCNA_00615 0.76 +0.1
659,186 + CCNA_00615 0.77 -1.4
659,194 - CCNA_00615 0.77 -1.1
659,211 - CCNA_00615 0.78 +0.3
659,240 + CCNA_00615 0.79 -0.5
659,245 + CCNA_00615 0.79 +0.8
659,248 - CCNA_00615 0.79 +0.6
659,256 + CCNA_00615 0.79 +0.1
659,297 - CCNA_00615 0.81 -0.8
659,299 - CCNA_00615 0.81 -0.4
659,345 + CCNA_00615 0.82 -0.7
659,353 + CCNA_00615 0.82 -0.7
659,353 - CCNA_00615 0.82 +0.4
659,366 + CCNA_00615 0.83 -1.2
659,369 - CCNA_00615 0.83 -1.2
659,371 + CCNA_00615 0.83 +0.7
659,374 - CCNA_00615 0.83 +0.7
659,374 - CCNA_00615 0.83 +0.6
659,397 - CCNA_00615 0.84 -0.5
659,434 + CCNA_00615 0.85 +1.8
659,526 + CCNA_00615 0.88 -1.4
659,553 - CCNA_00615 0.89 -2.2
659,564 + CCNA_00615 0.90 -0.6
659,564 + +0.8
659,564 + CCNA_00615 0.90 -0.5
659,572 - +1.1
659,572 - +0.6
659,574 + +1.3
659,579 + -1.2
659,592 + -0.2
659,600 - -1.0
659,615 + -0.1
659,630 - -0.2
659,695 + -2.1
659,695 + -2.3
659,695 + +0.4
659,703 - -0.9
659,718 + +0.8
659,740 - +1.4
659,740 - -0.9
659,740 - -0.1
659,756 + +0.3
659,805 + -0.9
659,805 + +0.3
659,813 - -0.1
659,819 + -1.9
659,837 - -1.0
659,853 + +0.9
659,853 + -1.1
659,861 - +0.7
659,861 - -2.2
659,861 - +1.0
659,878 + -0.2
659,886 - +1.0
659,889 + -2.3
659,889 + +0.5
659,889 + -0.1
659,897 - +1.5
659,897 - +1.7
659,898 + -2.3
659,899 + +0.6
659,899 + +0.9
659,907 - +1.3
659,907 - +1.7
659,907 - +0.9
659,907 - +1.5
659,907 - +1.4
659,910 + -0.2
659,910 + -1.5
659,918 - +1.2
659,918 - +1.3
659,918 - +1.7
659,987 + CCNA_03924 0.38 +0.1
659,987 + CCNA_03924 0.38 -0.2
659,987 + CCNA_03924 0.38 +0.2
659,987 + CCNA_03924 0.38 +0.8
659,987 + CCNA_03924 0.38 -0.4
659,987 + CCNA_03924 0.38 -2.4
659,995 - CCNA_03924 0.49 -0.2
659,995 - CCNA_03924 0.49 +0.3
659,995 - CCNA_03924 0.49 +1.6
659,995 - CCNA_03924 0.49 +0.5
659,995 - CCNA_03924 0.49 +0.6
659,995 - CCNA_03924 0.49 +1.3
659,995 - CCNA_03924 0.49 +0.6
659,995 - CCNA_03924 0.49 -0.1
659,995 - CCNA_03924 0.49 -0.8
659,995 - CCNA_03924 0.49 -0.0
659,995 - CCNA_03924 0.49 +0.3
659,995 - CCNA_03924 0.49 -2.2
660,016 + CCNA_03924 0.78 -0.5
660,026 + -0.3
660,034 - +0.6
660,036 - +0.6
660,072 - +1.6
660,107 + -0.1
660,155 + -0.5
660,162 + -0.3
660,179 + -0.9
660,186 - -0.5
660,187 - +0.6
660,273 - CCNA_00616 0.25 +1.4
660,288 + CCNA_00616 0.29 +0.4
660,291 + CCNA_00616 0.29 -0.3
660,311 + CCNA_00616 0.34 -1.5
660,324 - CCNA_00616 0.37 +1.7
660,327 + CCNA_00616 0.37 +0.1
660,359 + CCNA_00616 0.44 -0.8
660,369 + CCNA_00616 0.46 -0.5
660,412 - CCNA_00616 0.56 -2.1
660,429 + CCNA_00616 0.60 +1.1
660,453 + CCNA_00616 0.65 +1.8
660,468 + CCNA_00616 0.68 +0.2
660,476 + CCNA_00616 0.70 -2.2
660,478 - CCNA_00616 0.70 -0.4
660,482 + CCNA_00616 0.71 -1.8
660,483 - CCNA_00616 0.71 -1.4
660,484 - CCNA_00616 0.72 +0.8
660,490 - CCNA_00616 0.73 +0.9
660,496 + CCNA_00616 0.74 -0.2
660,509 - CCNA_00616 0.77 -1.2
660,553 + CCNA_00616 0.87 -0.3
660,553 + CCNA_00616 0.87 -0.9
660,561 - CCNA_00616 0.89 -0.7
660,612 - -2.1
660,709 - +0.2
660,771 - -0.2
660,773 + +1.4
660,814 + +2.3
660,820 - +0.2
660,826 - -1.8
660,842 + CCNA_00617 0.11 +0.2
660,875 + CCNA_00617 0.14 +0.3
660,875 + CCNA_00617 0.14 +1.3
660,894 + CCNA_00617 0.16 +1.9
660,904 + CCNA_00617 0.17 +0.5
660,904 + CCNA_00617 0.17 +0.4
660,904 + CCNA_00617 0.17 -0.5
660,907 - CCNA_00617 0.17 +0.1
660,938 - CCNA_00617 0.20 -0.0
660,977 - CCNA_00617 0.24 -3.4
661,003 + CCNA_00617 0.26 +0.5
661,003 + CCNA_00617 0.26 +0.9
661,011 - CCNA_00617 0.27 -0.6
661,013 + CCNA_00617 0.27 +0.5
661,019 + CCNA_00617 0.28 -0.0
661,021 + CCNA_00617 0.28 +0.4
661,021 - CCNA_00617 0.28 -1.5
661,022 + CCNA_00617 0.28 +1.8
661,030 - CCNA_00617 0.29 -2.4
661,030 - CCNA_00617 0.29 +0.4
661,043 + CCNA_00617 0.30 +0.6
661,077 - CCNA_00617 0.33 -1.8
661,086 + CCNA_00617 0.34 -0.0
661,094 - CCNA_00617 0.35 -0.3
661,103 + CCNA_00617 0.36 +0.0
661,123 + CCNA_00617 0.38 +0.8
661,144 - CCNA_00617 0.40 +0.8
661,176 + CCNA_00617 0.43 +1.7
661,212 - CCNA_00617 0.46 +0.2
661,225 - CCNA_00617 0.47 -0.8
661,245 + CCNA_00617 0.49 +0.2
661,248 - CCNA_00617 0.50 -0.3
661,252 + CCNA_00617 0.50 +0.7
661,252 + CCNA_00617 0.50 +0.2
661,252 + CCNA_00617 0.50 +0.4
661,252 + CCNA_00617 0.50 +0.4
661,252 - CCNA_00617 0.50 -1.7
661,260 - CCNA_00617 0.51 +1.1
661,260 - CCNA_00617 0.51 +0.6
661,260 - CCNA_00617 0.51 -1.1
661,260 - CCNA_00617 0.51 -0.7
661,270 - CCNA_00617 0.52 +0.2
661,288 + CCNA_00617 0.53 -0.1
661,288 + CCNA_00617 0.53 -0.0
661,288 + CCNA_00617 0.53 -0.5
661,293 + CCNA_00617 0.54 +0.6
661,296 - CCNA_00617 0.54 -2.3
661,296 - CCNA_00617 0.54 -0.8
661,382 - CCNA_00617 0.62 -0.8
661,402 - CCNA_00617 0.64 -0.3
661,441 + CCNA_00617 0.68 +1.8
661,449 - CCNA_00617 0.69 -1.1
661,453 + CCNA_00617 0.69 +0.1
661,483 + CCNA_00617 0.72 +0.7
661,514 + CCNA_00617 0.75 +2.0
661,541 - CCNA_00617 0.78 -1.8
661,592 + CCNA_00617 0.82 +0.5
661,592 + CCNA_00617 0.82 +0.1
661,600 - CCNA_00617 0.83 -1.4
661,600 - CCNA_00617 0.83 +1.8

Or see this region's nucleotide sequence