Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00421

Experiment: PYE with Tetracycline 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00419 and CCNA_00420 are separated by 64 nucleotidesCCNA_00420 and CCNA_00421 overlap by 4 nucleotidesCCNA_00421 and CCNA_00422 are separated by 49 nucleotidesCCNA_00422 and CCNA_03919 are separated by 1 nucleotides CCNA_00419: CCNA_00419 - fasciclin domain cell surface protein, at 430,733 to 431,269 _00419 CCNA_00420: CCNA_00420 - hypothetical protein, at 431,334 to 431,885 _00420 CCNA_00421: CCNA_00421 - dihydroneopterin aldolase, at 431,882 to 432,286 _00421 CCNA_00422: CCNA_00422 - SDR pteridine reductase, at 432,336 to 433,088 _00422 CCNA_03919: CCNA_03919 - hypothetical protein, at 433,090 to 433,170 _03919 Position (kb) 431 432 433Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 430.898 kb on - strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.900 kb on + strand, within CCNA_00419at 430.905 kb on + strand, within CCNA_00419at 430.908 kb on - strand, within CCNA_00419at 430.912 kb on + strand, within CCNA_00419at 430.927 kb on + strand, within CCNA_00419at 430.935 kb on - strand, within CCNA_00419at 430.977 kb on + strand, within CCNA_00419at 430.977 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.982 kb on + strand, within CCNA_00419at 430.989 kb on + strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 430.990 kb on - strand, within CCNA_00419at 431.005 kb on + strand, within CCNA_00419at 431.013 kb on - strand, within CCNA_00419at 431.027 kb on + strand, within CCNA_00419at 431.027 kb on + strand, within CCNA_00419at 431.035 kb on - strand, within CCNA_00419at 431.035 kb on - strand, within CCNA_00419at 431.047 kb on + strand, within CCNA_00419at 431.056 kb on + strand, within CCNA_00419at 431.063 kb on + strand, within CCNA_00419at 431.068 kb on + strand, within CCNA_00419at 431.069 kb on + strand, within CCNA_00419at 431.077 kb on - strand, within CCNA_00419at 431.084 kb on + strand, within CCNA_00419at 431.092 kb on - strand, within CCNA_00419at 431.116 kb on - strand, within CCNA_00419at 431.134 kb on + strand, within CCNA_00419at 431.162 kb on + strand, within CCNA_00419at 431.162 kb on + strand, within CCNA_00419at 431.248 kb on - strandat 431.287 kb on + strandat 431.287 kb on + strandat 431.287 kb on + strandat 431.287 kb on + strandat 431.295 kb on - strandat 431.295 kb on - strandat 431.366 kb on + strandat 431.366 kb on + strandat 431.374 kb on - strandat 431.402 kb on - strand, within CCNA_00420at 431.402 kb on - strand, within CCNA_00420at 431.402 kb on - strand, within CCNA_00420at 431.435 kb on - strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.444 kb on + strand, within CCNA_00420at 431.452 kb on - strand, within CCNA_00420at 431.473 kb on - strand, within CCNA_00420at 431.473 kb on - strand, within CCNA_00420at 431.490 kb on + strand, within CCNA_00420at 431.490 kb on + strand, within CCNA_00420at 431.498 kb on - strand, within CCNA_00420at 431.498 kb on - strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.529 kb on + strand, within CCNA_00420at 431.531 kb on - strand, within CCNA_00420at 431.534 kb on + strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.537 kb on - strand, within CCNA_00420at 431.539 kb on + strand, within CCNA_00420at 431.539 kb on + strand, within CCNA_00420at 431.545 kb on + strand, within CCNA_00420at 431.556 kb on + strand, within CCNA_00420at 431.568 kb on - strand, within CCNA_00420at 431.575 kb on + strand, within CCNA_00420at 431.593 kb on + strand, within CCNA_00420at 431.593 kb on - strand, within CCNA_00420at 431.594 kb on - strand, within CCNA_00420at 431.598 kb on - strand, within CCNA_00420at 431.613 kb on + strand, within CCNA_00420at 431.621 kb on - strand, within CCNA_00420at 431.621 kb on - strand, within CCNA_00420at 431.662 kb on + strand, within CCNA_00420at 431.670 kb on - strand, within CCNA_00420at 431.670 kb on - strand, within CCNA_00420at 431.679 kb on + strand, within CCNA_00420at 431.757 kb on + strand, within CCNA_00420at 431.842 kb on + strandat 431.842 kb on + strandat 432.309 kb on + strandat 432.314 kb on + strandat 432.322 kb on + strandat 432.330 kb on - strandat 432.333 kb on + strandat 432.341 kb on - strandat 432.344 kb on - strandat 432.374 kb on - strandat 432.396 kb on + strandat 432.404 kb on - strandat 432.435 kb on - strand, within CCNA_00422at 432.452 kb on + strand, within CCNA_00422at 432.460 kb on - strand, within CCNA_00422at 432.533 kb on + strand, within CCNA_00422at 432.536 kb on - strand, within CCNA_00422at 432.545 kb on + strand, within CCNA_00422at 432.587 kb on - strand, within CCNA_00422at 432.588 kb on - strandat 432.591 kb on + strand, within CCNA_00422at 432.591 kb on + strand, within CCNA_00422at 432.598 kb on - strand, within CCNA_00422at 432.616 kb on + strand, within CCNA_00422at 432.621 kb on + strand, within CCNA_00422at 432.626 kb on + strand, within CCNA_00422at 432.724 kb on + strand, within CCNA_00422at 432.732 kb on - strand, within CCNA_00422at 432.760 kb on - strand, within CCNA_00422at 432.793 kb on + strand, within CCNA_00422at 432.824 kb on - strand, within CCNA_00422at 432.903 kb on - strand, within CCNA_00422at 432.920 kb on - strand, within CCNA_00422at 432.944 kb on - strand, within CCNA_00422at 432.963 kb on + strand, within CCNA_00422at 432.984 kb on + strand, within CCNA_00422at 433.007 kb on - strand, within CCNA_00422at 433.039 kb on - strandat 433.062 kb on + strandat 433.067 kb on + strandat 433.070 kb on - strandat 433.070 kb on - strandat 433.070 kb on - strandat 433.070 kb on - strandat 433.075 kb on - strandat 433.102 kb on + strand, within CCNA_03919at 433.116 kb on + strand, within CCNA_03919at 433.124 kb on - strand, within CCNA_03919at 433.125 kb on - strand, within CCNA_03919at 433.136 kb on + strand, within CCNA_03919at 433.136 kb on + strand, within CCNA_03919at 433.144 kb on - strand, within CCNA_03919at 433.144 kb on - strand, within CCNA_03919at 433.148 kb on - strand, within CCNA_03919at 433.172 kb on + strandat 433.205 kb on - strandat 433.233 kb on - strandat 433.245 kb on + strandat 433.253 kb on - strandat 433.264 kb on + strandat 433.268 kb on - strandat 433.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml
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430,898 - CCNA_00419 0.31 +0.1
430,900 + CCNA_00419 0.31 -1.6
430,900 + CCNA_00419 0.31 -0.1
430,900 + CCNA_00419 0.31 -0.4
430,905 + CCNA_00419 0.32 -0.7
430,908 - CCNA_00419 0.33 -2.6
430,912 + CCNA_00419 0.33 -0.2
430,927 + CCNA_00419 0.36 -0.3
430,935 - CCNA_00419 0.38 -0.3
430,977 + CCNA_00419 0.45 +0.3
430,977 + CCNA_00419 0.45 -0.1
430,982 + CCNA_00419 0.46 -0.1
430,982 + CCNA_00419 0.46 +0.8
430,982 + CCNA_00419 0.46 +0.5
430,982 + CCNA_00419 0.46 -0.3
430,982 + CCNA_00419 0.46 -0.7
430,982 + CCNA_00419 0.46 +0.5
430,989 + CCNA_00419 0.48 -0.8
430,990 - CCNA_00419 0.48 -0.7
430,990 - CCNA_00419 0.48 -1.5
430,990 - CCNA_00419 0.48 +0.6
430,990 - CCNA_00419 0.48 -2.3
430,990 - CCNA_00419 0.48 -1.1
430,990 - CCNA_00419 0.48 -1.1
430,990 - CCNA_00419 0.48 -1.1
430,990 - CCNA_00419 0.48 -1.7
430,990 - CCNA_00419 0.48 -1.2
431,005 + CCNA_00419 0.51 -0.3
431,013 - CCNA_00419 0.52 +0.0
431,027 + CCNA_00419 0.55 +0.1
431,027 + CCNA_00419 0.55 +0.1
431,035 - CCNA_00419 0.56 -1.1
431,035 - CCNA_00419 0.56 -0.3
431,047 + CCNA_00419 0.58 +0.4
431,056 + CCNA_00419 0.60 -0.3
431,063 + CCNA_00419 0.61 +0.6
431,068 + CCNA_00419 0.62 +0.7
431,069 + CCNA_00419 0.63 +1.2
431,077 - CCNA_00419 0.64 -0.4
431,084 + CCNA_00419 0.65 +1.6
431,092 - CCNA_00419 0.67 +1.3
431,116 - CCNA_00419 0.71 -0.8
431,134 + CCNA_00419 0.75 +0.1
431,162 + CCNA_00419 0.80 +0.5
431,162 + CCNA_00419 0.80 -0.3
431,248 - +1.0
431,287 + +1.1
431,287 + +1.5
431,287 + -0.0
431,287 + +0.7
431,295 - +0.4
431,295 - -1.1
431,366 + +0.0
431,366 + -3.1
431,374 - +1.1
431,402 - CCNA_00420 0.12 +0.8
431,402 - CCNA_00420 0.12 +0.4
431,402 - CCNA_00420 0.12 +0.6
431,435 - CCNA_00420 0.18 +0.9
431,444 + CCNA_00420 0.20 -0.8
431,444 + CCNA_00420 0.20 -0.2
431,444 + CCNA_00420 0.20 +1.2
431,444 + CCNA_00420 0.20 +0.3
431,444 + CCNA_00420 0.20 -0.9
431,444 + CCNA_00420 0.20 -1.4
431,444 + CCNA_00420 0.20 +0.1
431,452 - CCNA_00420 0.21 +0.5
431,473 - CCNA_00420 0.25 +0.5
431,473 - CCNA_00420 0.25 -0.2
431,490 + CCNA_00420 0.28 -0.7
431,490 + CCNA_00420 0.28 +0.1
431,498 - CCNA_00420 0.30 -1.4
431,498 - CCNA_00420 0.30 +0.2
431,529 + CCNA_00420 0.35 -1.0
431,529 + CCNA_00420 0.35 +0.1
431,529 + CCNA_00420 0.35 -0.4
431,529 + CCNA_00420 0.35 -0.8
431,529 + CCNA_00420 0.35 -2.2
431,531 - CCNA_00420 0.36 +0.3
431,534 + CCNA_00420 0.36 -0.6
431,537 - CCNA_00420 0.37 -1.1
431,537 - CCNA_00420 0.37 -0.2
431,537 - CCNA_00420 0.37 +1.2
431,537 - CCNA_00420 0.37 +1.1
431,539 + CCNA_00420 0.37 -0.6
431,539 + CCNA_00420 0.37 -1.3
431,545 + CCNA_00420 0.38 -1.4
431,556 + CCNA_00420 0.40 -1.5
431,568 - CCNA_00420 0.42 +0.6
431,575 + CCNA_00420 0.44 -0.6
431,593 + CCNA_00420 0.47 -3.4
431,593 - CCNA_00420 0.47 +0.5
431,594 - CCNA_00420 0.47 +0.3
431,598 - CCNA_00420 0.48 -0.5
431,613 + CCNA_00420 0.51 -1.8
431,621 - CCNA_00420 0.52 +0.4
431,621 - CCNA_00420 0.52 +0.7
431,662 + CCNA_00420 0.59 +2.3
431,670 - CCNA_00420 0.61 +1.8
431,670 - CCNA_00420 0.61 +0.4
431,679 + CCNA_00420 0.62 -0.2
431,757 + CCNA_00420 0.77 -0.6
431,842 + -1.0
431,842 + -0.1
432,309 + +0.9
432,314 + +0.0
432,322 + +0.2
432,330 - +0.9
432,333 + -0.8
432,341 - +0.7
432,344 - +0.1
432,374 - -0.0
432,396 + -0.7
432,404 - -0.9
432,435 - CCNA_00422 0.13 -0.1
432,452 + CCNA_00422 0.15 -2.1
432,460 - CCNA_00422 0.16 +0.4
432,533 + CCNA_00422 0.26 +0.6
432,536 - CCNA_00422 0.27 -2.1
432,545 + CCNA_00422 0.28 -0.1
432,587 - CCNA_00422 0.33 +0.4
432,588 - +1.4
432,591 + CCNA_00422 0.34 +1.0
432,591 + CCNA_00422 0.34 -0.6
432,598 - CCNA_00422 0.35 +1.4
432,616 + CCNA_00422 0.37 +1.2
432,621 + CCNA_00422 0.38 -1.4
432,626 + CCNA_00422 0.39 -0.3
432,724 + CCNA_00422 0.52 -0.4
432,732 - CCNA_00422 0.53 +1.6
432,760 - CCNA_00422 0.56 +0.5
432,793 + CCNA_00422 0.61 +0.7
432,824 - CCNA_00422 0.65 +0.8
432,903 - CCNA_00422 0.75 +0.8
432,920 - CCNA_00422 0.78 +0.3
432,944 - CCNA_00422 0.81 +1.2
432,963 + CCNA_00422 0.83 +1.0
432,984 + CCNA_00422 0.86 -0.6
433,007 - CCNA_00422 0.89 +0.5
433,039 - +0.1
433,062 + +0.2
433,067 + +1.4
433,070 - +1.0
433,070 - -0.8
433,070 - +1.3
433,070 - +0.9
433,075 - +1.0
433,102 + CCNA_03919 0.15 +0.0
433,116 + CCNA_03919 0.32 -1.2
433,124 - CCNA_03919 0.42 +3.2
433,125 - CCNA_03919 0.43 -0.3
433,136 + CCNA_03919 0.57 -0.4
433,136 + CCNA_03919 0.57 +0.7
433,144 - CCNA_03919 0.67 +1.0
433,144 - CCNA_03919 0.67 +1.4
433,148 - CCNA_03919 0.72 +0.9
433,172 + -0.7
433,205 - +0.1
433,233 - +1.7
433,245 + +0.7
433,253 - -3.1
433,264 + -1.4
433,268 - +0.6
433,268 - -2.5

Or see this region's nucleotide sequence