Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00279

Experiment: PYE with Tetracycline 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00277 and CCNA_00278 are separated by 17 nucleotidesCCNA_00278 and CCNA_00279 are separated by 51 nucleotidesCCNA_00279 and CCNA_00280 overlap by 4 nucleotidesCCNA_00280 and CCNA_00281 overlap by 1 nucleotides CCNA_00277: CCNA_00277 - succinyl-diaminopimelate desuccinylase, at 290,161 to 291,321 _00277 CCNA_00278: CCNA_00278 - glutaminase, at 291,339 to 292,259 _00278 CCNA_00279: CCNA_00279 - NAD(P)H-quinone reductase, at 292,311 to 292,901 _00279 CCNA_00280: CCNA_00280 - tRNA pseudouridine synthase A, at 292,898 to 293,641 _00280 CCNA_00281: CCNA_00281 - methionyl-tRNA formyltransferase, at 293,641 to 294,567 _00281 Position (kb) 292 293Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 291.315 kb on + strandat 291.315 kb on + strandat 291.315 kb on + strandat 291.323 kb on - strandat 291.323 kb on - strandat 291.345 kb on - strandat 291.376 kb on - strandat 291.376 kb on - strandat 291.389 kb on - strandat 291.415 kb on - strandat 291.468 kb on + strand, within CCNA_00278at 291.506 kb on - strand, within CCNA_00278at 291.513 kb on + strand, within CCNA_00278at 291.513 kb on + strand, within CCNA_00278at 291.538 kb on + strand, within CCNA_00278at 291.546 kb on - strand, within CCNA_00278at 291.552 kb on + strand, within CCNA_00278at 291.553 kb on + strand, within CCNA_00278at 291.553 kb on - strand, within CCNA_00278at 291.572 kb on - strand, within CCNA_00278at 291.572 kb on - strand, within CCNA_00278at 291.588 kb on + strand, within CCNA_00278at 291.619 kb on - strand, within CCNA_00278at 291.644 kb on + strand, within CCNA_00278at 291.657 kb on - strand, within CCNA_00278at 291.755 kb on - strand, within CCNA_00278at 291.767 kb on + strand, within CCNA_00278at 291.808 kb on + strand, within CCNA_00278at 291.816 kb on - strand, within CCNA_00278at 291.816 kb on - strand, within CCNA_00278at 291.871 kb on + strand, within CCNA_00278at 291.915 kb on - strand, within CCNA_00278at 291.922 kb on - strand, within CCNA_00278at 291.926 kb on + strand, within CCNA_00278at 291.987 kb on - strand, within CCNA_00278at 292.006 kb on - strand, within CCNA_00278at 292.017 kb on + strand, within CCNA_00278at 292.044 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.059 kb on + strand, within CCNA_00278at 292.067 kb on - strand, within CCNA_00278at 292.069 kb on + strand, within CCNA_00278at 292.095 kb on + strand, within CCNA_00278at 292.109 kb on + strand, within CCNA_00278at 292.126 kb on - strand, within CCNA_00278at 292.129 kb on + strand, within CCNA_00278at 292.145 kb on + strand, within CCNA_00278at 292.259 kb on - strandat 292.264 kb on + strandat 292.269 kb on + strandat 292.298 kb on - strandat 292.326 kb on - strandat 292.373 kb on + strand, within CCNA_00279at 292.381 kb on - strand, within CCNA_00279at 292.394 kb on + strand, within CCNA_00279at 292.404 kb on - strand, within CCNA_00279at 292.431 kb on - strand, within CCNA_00279at 292.450 kb on + strand, within CCNA_00279at 292.457 kb on + strand, within CCNA_00279at 292.493 kb on + strand, within CCNA_00279at 292.494 kb on - strand, within CCNA_00279at 292.537 kb on - strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.598 kb on + strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.606 kb on - strand, within CCNA_00279at 292.627 kb on - strand, within CCNA_00279at 292.698 kb on + strand, within CCNA_00279at 292.698 kb on + strand, within CCNA_00279at 292.703 kb on + strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.706 kb on - strand, within CCNA_00279at 292.710 kb on + strand, within CCNA_00279at 292.710 kb on + strand, within CCNA_00279at 292.710 kb on + strand, within CCNA_00279at 292.718 kb on - strand, within CCNA_00279at 292.718 kb on - strand, within CCNA_00279at 292.761 kb on + strand, within CCNA_00279at 292.785 kb on - strand, within CCNA_00279at 292.785 kb on - strand, within CCNA_00279at 292.816 kb on - strand, within CCNA_00279at 292.827 kb on + strand, within CCNA_00279at 292.833 kb on - strand, within CCNA_00279at 292.833 kb on - strand, within CCNA_00279at 292.879 kb on + strandat 292.879 kb on + strandat 292.900 kb on + strandat 292.986 kb on + strand, within CCNA_00280at 292.987 kb on + strand, within CCNA_00280at 292.994 kb on - strand, within CCNA_00280at 292.994 kb on - strand, within CCNA_00280at 293.002 kb on - strand, within CCNA_00280at 293.004 kb on + strand, within CCNA_00280at 293.004 kb on + strand, within CCNA_00280at 293.022 kb on + strand, within CCNA_00280at 293.022 kb on + strand, within CCNA_00280at 293.030 kb on - strand, within CCNA_00280at 293.030 kb on - strand, within CCNA_00280at 293.051 kb on + strand, within CCNA_00280at 293.051 kb on + strand, within CCNA_00280at 293.077 kb on - strand, within CCNA_00280at 293.125 kb on + strand, within CCNA_00280at 293.128 kb on - strand, within CCNA_00280at 293.167 kb on - strand, within CCNA_00280at 293.191 kb on + strand, within CCNA_00280at 293.214 kb on - strand, within CCNA_00280at 293.229 kb on + strand, within CCNA_00280at 293.243 kb on - strand, within CCNA_00280at 293.262 kb on + strand, within CCNA_00280at 293.275 kb on - strand, within CCNA_00280at 293.275 kb on - strand, within CCNA_00280at 293.275 kb on - strand, within CCNA_00280at 293.299 kb on - strand, within CCNA_00280at 293.299 kb on - strand, within CCNA_00280at 293.315 kb on - strand, within CCNA_00280at 293.320 kb on - strand, within CCNA_00280at 293.333 kb on - strand, within CCNA_00280at 293.340 kb on + strand, within CCNA_00280at 293.348 kb on - strand, within CCNA_00280at 293.348 kb on - strandat 293.348 kb on - strand, within CCNA_00280at 293.390 kb on + strand, within CCNA_00280at 293.390 kb on + strand, within CCNA_00280at 293.398 kb on - strand, within CCNA_00280at 293.403 kb on - strand, within CCNA_00280at 293.403 kb on - strand, within CCNA_00280at 293.417 kb on - strand, within CCNA_00280at 293.436 kb on + strand, within CCNA_00280at 293.438 kb on - strand, within CCNA_00280at 293.471 kb on + strand, within CCNA_00280at 293.532 kb on + strandat 293.567 kb on + strandat 293.567 kb on + strandat 293.591 kb on - strandat 293.601 kb on - strandat 293.601 kb on - strandat 293.634 kb on - strandat 293.644 kb on + strandat 293.652 kb on - strandat 293.660 kb on - strandat 293.662 kb on - strandat 293.804 kb on + strand, within CCNA_00281

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml
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291,315 + +0.3
291,315 + +1.1
291,315 + +0.7
291,323 - -1.1
291,323 - -0.5
291,345 - -0.2
291,376 - -0.1
291,376 - -0.3
291,389 - -2.0
291,415 - -0.3
291,468 + CCNA_00278 0.14 -0.7
291,506 - CCNA_00278 0.18 -0.4
291,513 + CCNA_00278 0.19 +0.0
291,513 + CCNA_00278 0.19 -0.8
291,538 + CCNA_00278 0.22 -0.2
291,546 - CCNA_00278 0.22 -0.0
291,552 + CCNA_00278 0.23 -0.0
291,553 + CCNA_00278 0.23 -0.5
291,553 - CCNA_00278 0.23 -2.1
291,572 - CCNA_00278 0.25 -1.1
291,572 - CCNA_00278 0.25 +0.3
291,588 + CCNA_00278 0.27 +0.3
291,619 - CCNA_00278 0.30 +0.5
291,644 + CCNA_00278 0.33 +0.7
291,657 - CCNA_00278 0.35 +0.6
291,755 - CCNA_00278 0.45 -0.8
291,767 + CCNA_00278 0.46 +0.2
291,808 + CCNA_00278 0.51 +0.1
291,816 - CCNA_00278 0.52 -1.1
291,816 - CCNA_00278 0.52 +1.0
291,871 + CCNA_00278 0.58 -0.4
291,915 - CCNA_00278 0.63 +0.0
291,922 - CCNA_00278 0.63 -0.8
291,926 + CCNA_00278 0.64 +0.7
291,987 - CCNA_00278 0.70 +1.0
292,006 - CCNA_00278 0.72 -2.1
292,017 + CCNA_00278 0.74 +1.0
292,044 + CCNA_00278 0.77 +0.0
292,059 + CCNA_00278 0.78 +1.0
292,059 + CCNA_00278 0.78 +0.4
292,059 + CCNA_00278 0.78 -1.8
292,059 + CCNA_00278 0.78 +1.3
292,067 - CCNA_00278 0.79 -2.2
292,069 + CCNA_00278 0.79 +0.6
292,095 + CCNA_00278 0.82 +0.3
292,109 + CCNA_00278 0.84 +0.0
292,126 - CCNA_00278 0.85 +2.0
292,129 + CCNA_00278 0.86 -0.2
292,145 + CCNA_00278 0.88 -1.3
292,259 - -0.5
292,264 + +0.3
292,269 + -0.5
292,298 - -2.1
292,326 - -1.5
292,373 + CCNA_00279 0.10 -0.9
292,381 - CCNA_00279 0.12 -0.2
292,394 + CCNA_00279 0.14 -0.2
292,404 - CCNA_00279 0.16 -0.8
292,431 - CCNA_00279 0.20 -1.3
292,450 + CCNA_00279 0.24 -0.4
292,457 + CCNA_00279 0.25 -0.3
292,493 + CCNA_00279 0.31 -0.6
292,494 - CCNA_00279 0.31 +0.3
292,537 - CCNA_00279 0.38 +0.2
292,598 + CCNA_00279 0.49 -1.6
292,598 + CCNA_00279 0.49 -0.8
292,598 + CCNA_00279 0.49 -0.6
292,598 + CCNA_00279 0.49 +0.3
292,598 + CCNA_00279 0.49 -0.6
292,598 + CCNA_00279 0.49 -0.0
292,598 + CCNA_00279 0.49 +0.7
292,598 + CCNA_00279 0.49 +0.6
292,606 - CCNA_00279 0.50 +0.2
292,606 - CCNA_00279 0.50 -1.2
292,606 - CCNA_00279 0.50 -1.2
292,606 - CCNA_00279 0.50 -0.6
292,606 - CCNA_00279 0.50 +0.7
292,606 - CCNA_00279 0.50 -0.9
292,606 - CCNA_00279 0.50 -2.5
292,627 - CCNA_00279 0.53 -1.3
292,698 + CCNA_00279 0.65 -0.3
292,698 + CCNA_00279 0.65 -2.4
292,703 + CCNA_00279 0.66 -0.0
292,706 - CCNA_00279 0.67 -2.4
292,706 - CCNA_00279 0.67 -1.2
292,706 - CCNA_00279 0.67 -2.0
292,710 + CCNA_00279 0.68 -1.4
292,710 + CCNA_00279 0.68 +0.2
292,710 + CCNA_00279 0.68 +1.2
292,718 - CCNA_00279 0.69 -0.2
292,718 - CCNA_00279 0.69 +0.5
292,761 + CCNA_00279 0.76 -0.2
292,785 - CCNA_00279 0.80 +0.7
292,785 - CCNA_00279 0.80 -0.1
292,816 - CCNA_00279 0.85 -1.0
292,827 + CCNA_00279 0.87 +0.2
292,833 - CCNA_00279 0.88 -1.3
292,833 - CCNA_00279 0.88 -0.2
292,879 + +1.0
292,879 + +0.1
292,900 + +0.1
292,986 + CCNA_00280 0.12 +0.2
292,987 + CCNA_00280 0.12 -2.1
292,994 - CCNA_00280 0.13 +0.3
292,994 - CCNA_00280 0.13 -0.2
293,002 - CCNA_00280 0.14 +1.5
293,004 + CCNA_00280 0.14 -0.3
293,004 + CCNA_00280 0.14 -0.0
293,022 + CCNA_00280 0.17 +0.2
293,022 + CCNA_00280 0.17 -0.2
293,030 - CCNA_00280 0.18 -2.9
293,030 - CCNA_00280 0.18 -1.6
293,051 + CCNA_00280 0.21 +0.1
293,051 + CCNA_00280 0.21 -0.5
293,077 - CCNA_00280 0.24 -0.1
293,125 + CCNA_00280 0.31 -1.0
293,128 - CCNA_00280 0.31 -0.5
293,167 - CCNA_00280 0.36 -1.3
293,191 + CCNA_00280 0.39 -2.6
293,214 - CCNA_00280 0.42 -1.2
293,229 + CCNA_00280 0.44 -3.2
293,243 - CCNA_00280 0.46 -3.2
293,262 + CCNA_00280 0.49 -0.3
293,275 - CCNA_00280 0.51 +0.8
293,275 - CCNA_00280 0.51 +0.3
293,275 - CCNA_00280 0.51 -0.4
293,299 - CCNA_00280 0.54 -0.3
293,299 - CCNA_00280 0.54 +0.1
293,315 - CCNA_00280 0.56 -1.0
293,320 - CCNA_00280 0.57 +0.2
293,333 - CCNA_00280 0.58 -1.0
293,340 + CCNA_00280 0.59 +0.6
293,348 - CCNA_00280 0.60 -0.1
293,348 - +3.0
293,348 - CCNA_00280 0.60 +0.2
293,390 + CCNA_00280 0.66 -1.0
293,390 + CCNA_00280 0.66 -0.7
293,398 - CCNA_00280 0.67 +1.5
293,403 - CCNA_00280 0.68 +1.8
293,403 - CCNA_00280 0.68 -0.9
293,417 - CCNA_00280 0.70 -0.4
293,436 + CCNA_00280 0.72 -2.1
293,438 - CCNA_00280 0.73 +0.2
293,471 + CCNA_00280 0.77 +0.3
293,532 + +1.6
293,567 + -0.4
293,567 + -0.5
293,591 - +0.3
293,601 - +0.3
293,601 - -0.0
293,634 - +0.5
293,644 + -2.8
293,652 - +0.4
293,660 - +1.3
293,662 - +0.8
293,804 + CCNA_00281 0.18 -0.4

Or see this region's nucleotide sequence