Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00049

Experiment: PYE with Tetracycline 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00048 and CCNA_00049 are separated by 119 nucleotidesCCNA_00049 and CCNA_00050 are separated by 27 nucleotides CCNA_00048: CCNA_00048 - S-adenosylmethionine synthetase, at 50,902 to 52,125 _00048 CCNA_00049: CCNA_00049 - HTH transcriptional regulator, at 52,245 to 52,679 _00049 CCNA_00050: CCNA_00050 - apolipoprotein N-acyltransferase, at 52,707 to 54,299 _00050 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 52.259 kb on - strandat 52.287 kb on - strandat 52.296 kb on + strand, within CCNA_00049at 52.323 kb on - strand, within CCNA_00049at 52.332 kb on - strand, within CCNA_00049at 52.339 kb on - strand, within CCNA_00049at 52.339 kb on - strand, within CCNA_00049at 52.350 kb on - strand, within CCNA_00049at 52.352 kb on + strand, within CCNA_00049at 52.360 kb on - strand, within CCNA_00049at 52.360 kb on - strand, within CCNA_00049at 52.360 kb on - strand, within CCNA_00049at 52.369 kb on - strand, within CCNA_00049at 52.388 kb on - strand, within CCNA_00049at 52.403 kb on + strand, within CCNA_00049at 52.428 kb on - strand, within CCNA_00049at 52.438 kb on - strand, within CCNA_00049at 52.496 kb on - strand, within CCNA_00049at 52.535 kb on - strand, within CCNA_00049at 52.821 kb on + strandat 52.904 kb on + strand, within CCNA_00050at 52.912 kb on - strand, within CCNA_00050at 52.912 kb on - strand, within CCNA_00050at 52.912 kb on - strand, within CCNA_00050at 52.958 kb on + strand, within CCNA_00050at 52.963 kb on + strand, within CCNA_00050at 52.966 kb on - strand, within CCNA_00050at 52.972 kb on - strand, within CCNA_00050at 52.989 kb on - strand, within CCNA_00050at 53.023 kb on - strand, within CCNA_00050at 53.052 kb on + strand, within CCNA_00050at 53.088 kb on - strand, within CCNA_00050at 53.170 kb on - strand, within CCNA_00050at 53.204 kb on - strand, within CCNA_00050at 53.213 kb on - strand, within CCNA_00050at 53.238 kb on + strand, within CCNA_00050at 53.243 kb on + strand, within CCNA_00050at 53.288 kb on - strand, within CCNA_00050at 53.339 kb on - strand, within CCNA_00050at 53.353 kb on - strand, within CCNA_00050at 53.357 kb on - strand, within CCNA_00050at 53.374 kb on + strand, within CCNA_00050at 53.382 kb on - strand, within CCNA_00050at 53.419 kb on - strand, within CCNA_00050at 53.485 kb on - strand, within CCNA_00050at 53.495 kb on - strand, within CCNA_00050at 53.505 kb on - strand, within CCNA_00050at 53.511 kb on + strand, within CCNA_00050at 53.549 kb on - strand, within CCNA_00050at 53.549 kb on - strand, within CCNA_00050at 53.596 kb on - strand, within CCNA_00050at 53.600 kb on + strand, within CCNA_00050at 53.635 kb on + strand, within CCNA_00050at 53.637 kb on - strand, within CCNA_00050at 53.641 kb on + strand, within CCNA_00050at 53.641 kb on + strand, within CCNA_00050at 53.649 kb on - strand, within CCNA_00050at 53.649 kb on - strand, within CCNA_00050at 53.675 kb on - strand, within CCNA_00050

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml
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52,259 - +0.8
52,287 - +1.0
52,296 + CCNA_00049 0.12 -1.6
52,323 - CCNA_00049 0.18 -1.9
52,332 - CCNA_00049 0.20 -1.0
52,339 - CCNA_00049 0.22 -0.5
52,339 - CCNA_00049 0.22 -0.5
52,350 - CCNA_00049 0.24 -0.6
52,352 + CCNA_00049 0.25 -2.7
52,360 - CCNA_00049 0.26 -2.7
52,360 - CCNA_00049 0.26 +1.0
52,360 - CCNA_00049 0.26 -0.2
52,369 - CCNA_00049 0.29 -0.6
52,388 - CCNA_00049 0.33 +1.0
52,403 + CCNA_00049 0.36 +0.2
52,428 - CCNA_00049 0.42 +2.0
52,438 - CCNA_00049 0.44 -1.3
52,496 - CCNA_00049 0.58 -1.9
52,535 - CCNA_00049 0.67 -0.7
52,821 + +0.1
52,904 + CCNA_00050 0.12 -2.0
52,912 - CCNA_00050 0.13 -0.0
52,912 - CCNA_00050 0.13 -1.8
52,912 - CCNA_00050 0.13 -1.7
52,958 + CCNA_00050 0.16 -1.8
52,963 + CCNA_00050 0.16 -1.1
52,966 - CCNA_00050 0.16 +0.6
52,972 - CCNA_00050 0.17 -1.0
52,989 - CCNA_00050 0.18 -0.2
53,023 - CCNA_00050 0.20 -0.6
53,052 + CCNA_00050 0.22 -0.5
53,088 - CCNA_00050 0.24 -1.4
53,170 - CCNA_00050 0.29 -0.5
53,204 - CCNA_00050 0.31 -0.7
53,213 - CCNA_00050 0.32 -1.5
53,238 + CCNA_00050 0.33 -0.7
53,243 + CCNA_00050 0.34 -0.7
53,288 - CCNA_00050 0.36 -0.6
53,339 - CCNA_00050 0.40 -0.7
53,353 - CCNA_00050 0.41 +0.8
53,357 - CCNA_00050 0.41 -1.5
53,374 + CCNA_00050 0.42 -0.6
53,382 - CCNA_00050 0.42 +0.7
53,419 - CCNA_00050 0.45 +1.0
53,485 - CCNA_00050 0.49 -0.7
53,495 - CCNA_00050 0.49 -1.3
53,505 - CCNA_00050 0.50 -0.2
53,511 + CCNA_00050 0.50 -1.8
53,549 - CCNA_00050 0.53 -2.2
53,549 - CCNA_00050 0.53 -1.9
53,596 - CCNA_00050 0.56 -1.1
53,600 + CCNA_00050 0.56 -2.7
53,635 + CCNA_00050 0.58 -0.5
53,637 - CCNA_00050 0.58 -1.1
53,641 + CCNA_00050 0.59 -1.6
53,641 + CCNA_00050 0.59 +1.0
53,649 - CCNA_00050 0.59 -1.7
53,649 - CCNA_00050 0.59 -0.4
53,675 - CCNA_00050 0.61 -1.6

Or see this region's nucleotide sequence