Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS24410 and CA265_RS24415 are separated by 104 nucleotides CA265_RS24415 and CA265_RS24420 are separated by 10 nucleotides
CA265_RS24410: CA265_RS24410 - TIGR03364 family FAD-dependent oxidoreductase, at 5,943,208 to 5,944,368
_RS24410
CA265_RS24415: CA265_RS24415 - SusC/RagA family TonB-linked outer membrane protein, at 5,944,473 to 5,947,700
_RS24415
CA265_RS24420: CA265_RS24420 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 5,947,711 to 5,949,279
_RS24420
Position (kb) 5944
5945
5946
5947
5948 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5943.523 kb on + strand, within CA265_RS24410 at 5943.581 kb on - strand, within CA265_RS24410 at 5943.591 kb on + strand, within CA265_RS24410 at 5943.601 kb on + strand, within CA265_RS24410 at 5943.642 kb on - strand, within CA265_RS24410 at 5943.676 kb on + strand, within CA265_RS24410 at 5943.678 kb on + strand, within CA265_RS24410 at 5943.678 kb on + strand, within CA265_RS24410 at 5943.679 kb on - strand, within CA265_RS24410 at 5943.679 kb on - strand, within CA265_RS24410 at 5943.679 kb on - strand, within CA265_RS24410 at 5943.700 kb on + strand, within CA265_RS24410 at 5943.712 kb on + strand, within CA265_RS24410 at 5943.713 kb on - strand, within CA265_RS24410 at 5943.808 kb on - strand, within CA265_RS24410 at 5943.833 kb on + strand, within CA265_RS24410 at 5943.897 kb on + strand, within CA265_RS24410 at 5943.898 kb on - strand, within CA265_RS24410 at 5943.920 kb on + strand, within CA265_RS24410 at 5944.099 kb on + strand, within CA265_RS24410 at 5944.099 kb on + strand, within CA265_RS24410 at 5944.100 kb on - strand, within CA265_RS24410 at 5944.100 kb on - strand, within CA265_RS24410 at 5944.139 kb on + strand, within CA265_RS24410 at 5944.140 kb on - strand, within CA265_RS24410 at 5944.255 kb on - strand at 5944.255 kb on - strand at 5944.259 kb on + strand at 5944.260 kb on - strand at 5944.260 kb on - strand at 5944.448 kb on - strand at 5944.471 kb on - strand at 5944.485 kb on + strand at 5944.486 kb on - strand at 5944.541 kb on + strand at 5944.541 kb on + strand at 5944.542 kb on - strand at 5944.629 kb on - strand at 5944.652 kb on - strand at 5944.839 kb on + strand, within CA265_RS24415 at 5944.855 kb on + strand, within CA265_RS24415 at 5944.856 kb on - strand, within CA265_RS24415 at 5945.005 kb on + strand, within CA265_RS24415 at 5945.006 kb on - strand, within CA265_RS24415 at 5945.031 kb on - strand, within CA265_RS24415 at 5945.031 kb on - strand, within CA265_RS24415 at 5945.054 kb on + strand, within CA265_RS24415 at 5945.065 kb on - strand, within CA265_RS24415 at 5945.065 kb on - strand at 5945.098 kb on + strand, within CA265_RS24415 at 5945.098 kb on + strand, within CA265_RS24415 at 5945.099 kb on - strand, within CA265_RS24415 at 5945.100 kb on + strand, within CA265_RS24415 at 5945.101 kb on - strand, within CA265_RS24415 at 5945.101 kb on - strand, within CA265_RS24415 at 5945.117 kb on + strand, within CA265_RS24415 at 5945.118 kb on - strand, within CA265_RS24415 at 5945.118 kb on - strand, within CA265_RS24415 at 5945.172 kb on - strand, within CA265_RS24415 at 5945.182 kb on + strand, within CA265_RS24415 at 5945.183 kb on - strand, within CA265_RS24415 at 5945.266 kb on - strand, within CA265_RS24415 at 5945.356 kb on - strand, within CA265_RS24415 at 5945.418 kb on - strand, within CA265_RS24415 at 5945.418 kb on - strand, within CA265_RS24415 at 5945.423 kb on - strand, within CA265_RS24415 at 5945.497 kb on + strand, within CA265_RS24415 at 5945.508 kb on - strand, within CA265_RS24415 at 5945.508 kb on - strand, within CA265_RS24415 at 5945.544 kb on - strand, within CA265_RS24415 at 5945.551 kb on + strand, within CA265_RS24415 at 5945.552 kb on - strand, within CA265_RS24415 at 5945.552 kb on - strand, within CA265_RS24415 at 5945.552 kb on - strand, within CA265_RS24415 at 5945.572 kb on + strand, within CA265_RS24415 at 5945.586 kb on - strand, within CA265_RS24415 at 5945.618 kb on + strand, within CA265_RS24415 at 5945.625 kb on + strand, within CA265_RS24415 at 5945.664 kb on + strand, within CA265_RS24415 at 5945.685 kb on + strand, within CA265_RS24415 at 5945.739 kb on + strand, within CA265_RS24415 at 5945.771 kb on + strand, within CA265_RS24415 at 5945.772 kb on - strand, within CA265_RS24415 at 5945.775 kb on + strand, within CA265_RS24415 at 5945.776 kb on - strand, within CA265_RS24415 at 5945.794 kb on - strand, within CA265_RS24415 at 5945.817 kb on + strand, within CA265_RS24415 at 5945.818 kb on - strand, within CA265_RS24415 at 5945.876 kb on + strand, within CA265_RS24415 at 5945.882 kb on - strand, within CA265_RS24415 at 5945.906 kb on - strand, within CA265_RS24415 at 5945.926 kb on - strand, within CA265_RS24415 at 5945.935 kb on + strand, within CA265_RS24415 at 5946.072 kb on - strand, within CA265_RS24415 at 5946.134 kb on + strand, within CA265_RS24415 at 5946.166 kb on + strand, within CA265_RS24415 at 5946.166 kb on + strand, within CA265_RS24415 at 5946.169 kb on - strand, within CA265_RS24415 at 5946.233 kb on - strand, within CA265_RS24415 at 5946.256 kb on + strand, within CA265_RS24415 at 5946.263 kb on + strand, within CA265_RS24415 at 5946.298 kb on + strand, within CA265_RS24415 at 5946.342 kb on + strand, within CA265_RS24415 at 5946.358 kb on + strand, within CA265_RS24415 at 5946.383 kb on - strand, within CA265_RS24415 at 5946.398 kb on + strand, within CA265_RS24415 at 5946.426 kb on + strand, within CA265_RS24415 at 5946.516 kb on + strand, within CA265_RS24415 at 5946.517 kb on - strand, within CA265_RS24415 at 5946.528 kb on + strand, within CA265_RS24415 at 5946.561 kb on + strand at 5946.564 kb on - strand, within CA265_RS24415 at 5946.579 kb on + strand, within CA265_RS24415 at 5946.580 kb on - strand, within CA265_RS24415 at 5946.582 kb on - strand at 5946.604 kb on - strand, within CA265_RS24415 at 5946.604 kb on - strand, within CA265_RS24415 at 5946.874 kb on + strand, within CA265_RS24415 at 5946.875 kb on - strand, within CA265_RS24415 at 5946.951 kb on - strand, within CA265_RS24415 at 5946.974 kb on + strand, within CA265_RS24415 at 5946.975 kb on - strand, within CA265_RS24415 at 5946.975 kb on - strand, within CA265_RS24415 at 5946.978 kb on + strand, within CA265_RS24415 at 5947.187 kb on - strand, within CA265_RS24415 at 5947.229 kb on + strand, within CA265_RS24415 at 5947.282 kb on - strand, within CA265_RS24415 at 5947.357 kb on + strand, within CA265_RS24415 at 5947.385 kb on + strand at 5947.386 kb on - strand at 5947.409 kb on - strand at 5947.411 kb on + strand at 5947.419 kb on + strand at 5947.452 kb on - strand at 5947.467 kb on - strand at 5947.470 kb on + strand at 5947.489 kb on + strand at 5947.490 kb on - strand at 5947.508 kb on - strand at 5947.512 kb on - strand at 5947.562 kb on - strand at 5947.579 kb on - strand at 5947.593 kb on - strand at 5947.612 kb on + strand at 5947.613 kb on - strand at 5947.644 kb on - strand at 5947.649 kb on - strand at 5947.649 kb on - strand at 5947.672 kb on + strand at 5947.673 kb on - strand at 5947.673 kb on - strand at 5947.685 kb on + strand at 5947.686 kb on - strand at 5947.689 kb on - strand at 5947.689 kb on - strand at 5947.706 kb on - strand at 5947.721 kb on + strand at 5947.845 kb on + strand at 5947.861 kb on + strand at 5947.861 kb on + strand at 5947.861 kb on + strand at 5947.862 kb on - strand at 5947.915 kb on + strand, within CA265_RS24420 at 5947.916 kb on - strand, within CA265_RS24420 at 5947.957 kb on - strand, within CA265_RS24420 at 5947.961 kb on + strand, within CA265_RS24420 at 5947.972 kb on + strand, within CA265_RS24420 at 5948.152 kb on + strand, within CA265_RS24420 at 5948.260 kb on - strand, within CA265_RS24420 at 5948.304 kb on + strand, within CA265_RS24420 at 5948.305 kb on - strand, within CA265_RS24420 at 5948.315 kb on + strand, within CA265_RS24420 at 5948.315 kb on + strand, within CA265_RS24420 at 5948.570 kb on - strand, within CA265_RS24420 at 5948.572 kb on - strand, within CA265_RS24420
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 5,943,523 + CA265_RS24410 0.27 -1.4 5,943,581 - CA265_RS24410 0.32 -0.9 5,943,591 + CA265_RS24410 0.33 +0.1 5,943,601 + CA265_RS24410 0.34 -0.4 5,943,642 - CA265_RS24410 0.37 +2.0 5,943,676 + CA265_RS24410 0.40 +0.5 5,943,678 + CA265_RS24410 0.40 -0.3 5,943,678 + CA265_RS24410 0.40 -1.2 5,943,679 - CA265_RS24410 0.41 -1.0 5,943,679 - CA265_RS24410 0.41 -0.1 5,943,679 - CA265_RS24410 0.41 -0.4 5,943,700 + CA265_RS24410 0.42 -1.6 5,943,712 + CA265_RS24410 0.43 +0.4 5,943,713 - CA265_RS24410 0.43 -1.0 5,943,808 - CA265_RS24410 0.52 +0.3 5,943,833 + CA265_RS24410 0.54 -2.8 5,943,897 + CA265_RS24410 0.59 -1.7 5,943,898 - CA265_RS24410 0.59 +0.0 5,943,920 + CA265_RS24410 0.61 +0.5 5,944,099 + CA265_RS24410 0.77 +1.2 5,944,099 + CA265_RS24410 0.77 -1.0 5,944,100 - CA265_RS24410 0.77 +0.5 5,944,100 - CA265_RS24410 0.77 -1.2 5,944,139 + CA265_RS24410 0.80 -0.2 5,944,140 - CA265_RS24410 0.80 +0.2 5,944,255 - -0.7 5,944,255 - -0.5 5,944,259 + +0.8 5,944,260 - -0.9 5,944,260 - +2.5 5,944,448 - -0.3 5,944,471 - -0.2 5,944,485 + -1.6 5,944,486 - -0.5 5,944,541 + -2.2 5,944,541 + -1.0 5,944,542 - -1.2 5,944,629 - +1.2 5,944,652 - -0.5 5,944,839 + CA265_RS24415 0.11 +1.3 5,944,855 + CA265_RS24415 0.12 -0.3 5,944,856 - CA265_RS24415 0.12 +0.8 5,945,005 + CA265_RS24415 0.16 +0.1 5,945,006 - CA265_RS24415 0.17 +0.7 5,945,031 - CA265_RS24415 0.17 +0.4 5,945,031 - CA265_RS24415 0.17 +1.2 5,945,054 + CA265_RS24415 0.18 -0.8 5,945,065 - CA265_RS24415 0.18 -0.9 5,945,065 - +4.0 5,945,098 + CA265_RS24415 0.19 +0.9 5,945,098 + CA265_RS24415 0.19 +0.7 5,945,099 - CA265_RS24415 0.19 +0.6 5,945,100 + CA265_RS24415 0.19 -1.4 5,945,101 - CA265_RS24415 0.19 +0.5 5,945,101 - CA265_RS24415 0.19 +0.2 5,945,117 + CA265_RS24415 0.20 -0.6 5,945,118 - CA265_RS24415 0.20 +0.2 5,945,118 - CA265_RS24415 0.20 -0.2 5,945,172 - CA265_RS24415 0.22 +0.8 5,945,182 + CA265_RS24415 0.22 -0.2 5,945,183 - CA265_RS24415 0.22 -0.4 5,945,266 - CA265_RS24415 0.25 +1.1 5,945,356 - CA265_RS24415 0.27 -0.0 5,945,418 - CA265_RS24415 0.29 -0.6 5,945,418 - CA265_RS24415 0.29 +0.1 5,945,423 - CA265_RS24415 0.29 -0.3 5,945,497 + CA265_RS24415 0.32 -0.2 5,945,508 - CA265_RS24415 0.32 -0.6 5,945,508 - CA265_RS24415 0.32 -1.9 5,945,544 - CA265_RS24415 0.33 +0.3 5,945,551 + CA265_RS24415 0.33 -0.1 5,945,552 - CA265_RS24415 0.33 +0.5 5,945,552 - CA265_RS24415 0.33 +1.8 5,945,552 - CA265_RS24415 0.33 -0.1 5,945,572 + CA265_RS24415 0.34 -1.0 5,945,586 - CA265_RS24415 0.34 -0.6 5,945,618 + CA265_RS24415 0.35 -0.6 5,945,625 + CA265_RS24415 0.36 +0.2 5,945,664 + CA265_RS24415 0.37 +0.0 5,945,685 + CA265_RS24415 0.38 +0.6 5,945,739 + CA265_RS24415 0.39 +0.7 5,945,771 + CA265_RS24415 0.40 +0.3 5,945,772 - CA265_RS24415 0.40 +0.0 5,945,775 + CA265_RS24415 0.40 -0.0 5,945,776 - CA265_RS24415 0.40 -0.3 5,945,794 - CA265_RS24415 0.41 +0.8 5,945,817 + CA265_RS24415 0.42 -0.9 5,945,818 - CA265_RS24415 0.42 +0.4 5,945,876 + CA265_RS24415 0.43 +1.7 5,945,882 - CA265_RS24415 0.44 -0.8 5,945,906 - CA265_RS24415 0.44 +1.2 5,945,926 - CA265_RS24415 0.45 +0.9 5,945,935 + CA265_RS24415 0.45 +0.5 5,946,072 - CA265_RS24415 0.50 +0.3 5,946,134 + CA265_RS24415 0.51 +0.3 5,946,166 + CA265_RS24415 0.52 -0.4 5,946,166 + CA265_RS24415 0.52 +1.7 5,946,169 - CA265_RS24415 0.53 -0.8 5,946,233 - CA265_RS24415 0.55 +0.9 5,946,256 + CA265_RS24415 0.55 -0.4 5,946,263 + CA265_RS24415 0.55 +0.4 5,946,298 + CA265_RS24415 0.57 +0.4 5,946,342 + CA265_RS24415 0.58 +0.6 5,946,358 + CA265_RS24415 0.58 +0.0 5,946,383 - CA265_RS24415 0.59 -1.1 5,946,398 + CA265_RS24415 0.60 +0.6 5,946,426 + CA265_RS24415 0.61 +0.5 5,946,516 + CA265_RS24415 0.63 +1.7 5,946,517 - CA265_RS24415 0.63 +0.2 5,946,528 + CA265_RS24415 0.64 -0.2 5,946,561 + +1.3 5,946,564 - CA265_RS24415 0.65 +0.3 5,946,579 + CA265_RS24415 0.65 +1.2 5,946,580 - CA265_RS24415 0.65 +0.3 5,946,582 - +1.7 5,946,604 - CA265_RS24415 0.66 -0.7 5,946,604 - CA265_RS24415 0.66 +0.5 5,946,874 + CA265_RS24415 0.74 +0.4 5,946,875 - CA265_RS24415 0.74 +0.8 5,946,951 - CA265_RS24415 0.77 -1.2 5,946,974 + CA265_RS24415 0.77 -0.1 5,946,975 - CA265_RS24415 0.78 +0.1 5,946,975 - CA265_RS24415 0.78 -0.9 5,946,978 + CA265_RS24415 0.78 +1.4 5,947,187 - CA265_RS24415 0.84 -0.3 5,947,229 + CA265_RS24415 0.85 +0.1 5,947,282 - CA265_RS24415 0.87 -0.4 5,947,357 + CA265_RS24415 0.89 -0.9 5,947,385 + -0.0 5,947,386 - +2.7 5,947,409 - -0.2 5,947,411 + +0.4 5,947,419 + +0.3 5,947,452 - +0.4 5,947,467 - -0.4 5,947,470 + -0.4 5,947,489 + -0.1 5,947,490 - -0.6 5,947,508 - -0.7 5,947,512 - -0.5 5,947,562 - -1.0 5,947,579 - +0.5 5,947,593 - +0.6 5,947,612 + +0.3 5,947,613 - -0.7 5,947,644 - -1.1 5,947,649 - -1.7 5,947,649 - +0.9 5,947,672 + +1.3 5,947,673 - +0.1 5,947,673 - +0.9 5,947,685 + -0.2 5,947,686 - -0.4 5,947,689 - +1.0 5,947,689 - +0.3 5,947,706 - -0.1 5,947,721 + +0.1 5,947,845 + +0.4 5,947,861 + +0.2 5,947,861 + +0.9 5,947,861 + +0.0 5,947,862 - -0.1 5,947,915 + CA265_RS24420 0.13 +0.4 5,947,916 - CA265_RS24420 0.13 +0.4 5,947,957 - CA265_RS24420 0.16 -1.6 5,947,961 + CA265_RS24420 0.16 -1.6 5,947,972 + CA265_RS24420 0.17 -1.1 5,948,152 + CA265_RS24420 0.28 -0.3 5,948,260 - CA265_RS24420 0.35 +0.3 5,948,304 + CA265_RS24420 0.38 -2.1 5,948,305 - CA265_RS24420 0.38 +0.2 5,948,315 + CA265_RS24420 0.38 +0.8 5,948,315 + CA265_RS24420 0.38 +0.6 5,948,570 - CA265_RS24420 0.55 +0.1 5,948,572 - CA265_RS24420 0.55 -0.0
Or see this region's nucleotide sequence