Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01555 and CA265_RS01560 are separated by 0 nucleotides CA265_RS01560 and CA265_RS01565 are separated by 2 nucleotides CA265_RS01565 and CA265_RS01570 are separated by 3 nucleotides CA265_RS01570 and CA265_RS01575 are separated by 15 nucleotides
CA265_RS01555: CA265_RS01555 - KaiC 1, at 400,883 to 402,631
_RS01555
CA265_RS01560: CA265_RS01560 - circadian clock protein KaiB, at 402,632 to 402,922
_RS01560
CA265_RS01565: CA265_RS01565 - circadian clock protein KaiB, at 402,925 to 403,239
_RS01565
CA265_RS01570: CA265_RS01570 - hypothetical protein, at 403,243 to 405,012
_RS01570
CA265_RS01575: CA265_RS01575 - hypothetical protein, at 405,028 to 405,777
_RS01575
Position (kb) 403
404
405
406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.316 kb on - strand, within CA265_RS01555 at 402.316 kb on - strand, within CA265_RS01555 at 402.318 kb on - strand, within CA265_RS01555 at 402.318 kb on - strand, within CA265_RS01555 at 402.437 kb on - strand, within CA265_RS01555 at 402.508 kb on + strand at 402.520 kb on - strand at 402.520 kb on - strand at 402.590 kb on - strand at 402.662 kb on + strand, within CA265_RS01560 at 402.662 kb on + strand, within CA265_RS01560 at 402.743 kb on + strand, within CA265_RS01560 at 402.745 kb on + strand, within CA265_RS01560 at 402.898 kb on + strand at 402.899 kb on - strand at 402.900 kb on + strand at 402.905 kb on - strand at 402.921 kb on - strand at 402.921 kb on - strand at 402.954 kb on + strand at 403.032 kb on + strand, within CA265_RS01565 at 403.033 kb on - strand, within CA265_RS01565 at 403.073 kb on - strand, within CA265_RS01565 at 403.110 kb on - strand, within CA265_RS01565 at 403.116 kb on - strand, within CA265_RS01565 at 403.263 kb on + strand at 403.263 kb on + strand at 403.264 kb on - strand at 403.282 kb on + strand at 403.282 kb on + strand at 403.365 kb on - strand at 403.365 kb on - strand at 403.413 kb on + strand at 403.413 kb on + strand at 403.484 kb on - strand, within CA265_RS01570 at 403.517 kb on + strand, within CA265_RS01570 at 403.583 kb on + strand, within CA265_RS01570 at 403.584 kb on - strand, within CA265_RS01570 at 403.596 kb on + strand, within CA265_RS01570 at 403.597 kb on - strand, within CA265_RS01570 at 403.597 kb on - strand, within CA265_RS01570 at 403.599 kb on + strand, within CA265_RS01570 at 403.618 kb on - strand, within CA265_RS01570 at 403.618 kb on - strand, within CA265_RS01570 at 403.618 kb on - strand, within CA265_RS01570 at 403.763 kb on + strand, within CA265_RS01570 at 403.943 kb on + strand, within CA265_RS01570 at 403.959 kb on + strand, within CA265_RS01570 at 404.154 kb on + strand, within CA265_RS01570 at 404.179 kb on + strand, within CA265_RS01570 at 404.203 kb on - strand, within CA265_RS01570 at 404.231 kb on + strand, within CA265_RS01570 at 404.232 kb on - strand, within CA265_RS01570 at 404.278 kb on + strand, within CA265_RS01570 at 404.279 kb on - strand, within CA265_RS01570 at 404.297 kb on + strand, within CA265_RS01570 at 404.298 kb on - strand, within CA265_RS01570 at 404.298 kb on - strand, within CA265_RS01570 at 404.593 kb on + strand, within CA265_RS01570 at 404.593 kb on + strand, within CA265_RS01570 at 404.593 kb on + strand, within CA265_RS01570 at 404.594 kb on - strand, within CA265_RS01570 at 404.594 kb on - strand, within CA265_RS01570 at 404.595 kb on + strand, within CA265_RS01570 at 404.596 kb on - strand, within CA265_RS01570 at 404.616 kb on + strand, within CA265_RS01570 at 404.736 kb on - strand, within CA265_RS01570 at 404.771 kb on + strand, within CA265_RS01570 at 404.896 kb on - strand at 404.976 kb on + strand at 404.977 kb on - strand at 404.977 kb on - strand at 405.043 kb on + strand at 405.142 kb on - strand, within CA265_RS01575 at 405.143 kb on + strand, within CA265_RS01575 at 405.199 kb on + strand, within CA265_RS01575 at 405.200 kb on - strand, within CA265_RS01575 at 405.235 kb on + strand, within CA265_RS01575 at 405.236 kb on - strand, within CA265_RS01575 at 405.239 kb on - strand, within CA265_RS01575 at 405.269 kb on - strand, within CA265_RS01575 at 405.301 kb on - strand, within CA265_RS01575 at 405.359 kb on - strand, within CA265_RS01575 at 405.360 kb on + strand, within CA265_RS01575 at 405.360 kb on + strand, within CA265_RS01575 at 405.360 kb on + strand, within CA265_RS01575 at 405.361 kb on - strand, within CA265_RS01575 at 405.362 kb on + strand, within CA265_RS01575 at 405.363 kb on - strand, within CA265_RS01575 at 405.366 kb on + strand at 405.366 kb on + strand, within CA265_RS01575 at 405.408 kb on + strand, within CA265_RS01575 at 405.409 kb on - strand, within CA265_RS01575 at 405.422 kb on + strand, within CA265_RS01575 at 405.475 kb on - strand, within CA265_RS01575 at 405.588 kb on + strand, within CA265_RS01575 at 405.604 kb on - strand, within CA265_RS01575 at 405.639 kb on + strand, within CA265_RS01575 at 405.650 kb on + strand, within CA265_RS01575 at 405.651 kb on - strand, within CA265_RS01575 at 405.651 kb on - strand, within CA265_RS01575 at 405.748 kb on + strand at 405.816 kb on + strand at 405.909 kb on + strand at 405.959 kb on + strand at 406.012 kb on + strand at 406.012 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 402,316 - CA265_RS01555 0.82 +0.2 402,316 - CA265_RS01555 0.82 -0.4 402,318 - CA265_RS01555 0.82 +0.2 402,318 - CA265_RS01555 0.82 +0.7 402,437 - CA265_RS01555 0.89 -0.2 402,508 + -0.2 402,520 - +0.0 402,520 - +0.1 402,590 - +1.1 402,662 + CA265_RS01560 0.10 -1.4 402,662 + CA265_RS01560 0.10 -0.6 402,743 + CA265_RS01560 0.38 -0.6 402,745 + CA265_RS01560 0.39 +0.3 402,898 + +0.7 402,899 - +0.5 402,900 + -0.5 402,905 - +0.3 402,921 - +0.4 402,921 - -0.0 402,954 + +0.7 403,032 + CA265_RS01565 0.34 -1.0 403,033 - CA265_RS01565 0.34 +0.0 403,073 - CA265_RS01565 0.47 +0.4 403,110 - CA265_RS01565 0.59 +0.1 403,116 - CA265_RS01565 0.61 +0.3 403,263 + -0.2 403,263 + +0.1 403,264 - -1.9 403,282 + +0.1 403,282 + +0.2 403,365 - -0.5 403,365 - -0.3 403,413 + -0.3 403,413 + -0.5 403,484 - CA265_RS01570 0.14 -0.3 403,517 + CA265_RS01570 0.15 +0.6 403,583 + CA265_RS01570 0.19 +1.2 403,584 - CA265_RS01570 0.19 +0.2 403,596 + CA265_RS01570 0.20 +0.4 403,597 - CA265_RS01570 0.20 +0.3 403,597 - CA265_RS01570 0.20 +0.8 403,599 + CA265_RS01570 0.20 -0.7 403,618 - CA265_RS01570 0.21 +0.4 403,618 - CA265_RS01570 0.21 +0.4 403,618 - CA265_RS01570 0.21 +0.3 403,763 + CA265_RS01570 0.29 -0.1 403,943 + CA265_RS01570 0.40 -0.7 403,959 + CA265_RS01570 0.40 -0.4 404,154 + CA265_RS01570 0.51 +0.1 404,179 + CA265_RS01570 0.53 +1.8 404,203 - CA265_RS01570 0.54 +0.1 404,231 + CA265_RS01570 0.56 -0.8 404,232 - CA265_RS01570 0.56 +0.4 404,278 + CA265_RS01570 0.58 +0.8 404,279 - CA265_RS01570 0.59 +1.7 404,297 + CA265_RS01570 0.60 +0.2 404,298 - CA265_RS01570 0.60 +0.5 404,298 - CA265_RS01570 0.60 -0.9 404,593 + CA265_RS01570 0.76 -1.3 404,593 + CA265_RS01570 0.76 +0.3 404,593 + CA265_RS01570 0.76 +0.6 404,594 - CA265_RS01570 0.76 -0.2 404,594 - CA265_RS01570 0.76 +0.4 404,595 + CA265_RS01570 0.76 -0.3 404,596 - CA265_RS01570 0.76 +0.8 404,616 + CA265_RS01570 0.78 +0.4 404,736 - CA265_RS01570 0.84 +0.2 404,771 + CA265_RS01570 0.86 -1.2 404,896 - +0.2 404,976 + +0.2 404,977 - -0.2 404,977 - +0.3 405,043 + +1.7 405,142 - CA265_RS01575 0.15 +0.9 405,143 + CA265_RS01575 0.15 +0.4 405,199 + CA265_RS01575 0.23 +0.9 405,200 - CA265_RS01575 0.23 -0.4 405,235 + CA265_RS01575 0.28 +0.7 405,236 - CA265_RS01575 0.28 +0.1 405,239 - CA265_RS01575 0.28 -0.3 405,269 - CA265_RS01575 0.32 +0.0 405,301 - CA265_RS01575 0.36 +0.2 405,359 - CA265_RS01575 0.44 +0.2 405,360 + CA265_RS01575 0.44 +0.2 405,360 + CA265_RS01575 0.44 +0.5 405,360 + CA265_RS01575 0.44 +0.4 405,361 - CA265_RS01575 0.44 +0.6 405,362 + CA265_RS01575 0.45 -0.1 405,363 - CA265_RS01575 0.45 -1.0 405,366 + -0.3 405,366 + CA265_RS01575 0.45 -0.1 405,408 + CA265_RS01575 0.51 +1.7 405,409 - CA265_RS01575 0.51 -1.3 405,422 + CA265_RS01575 0.53 +0.6 405,475 - CA265_RS01575 0.60 -0.7 405,588 + CA265_RS01575 0.75 +1.3 405,604 - CA265_RS01575 0.77 +0.1 405,639 + CA265_RS01575 0.81 -0.1 405,650 + CA265_RS01575 0.83 +0.9 405,651 - CA265_RS01575 0.83 +0.1 405,651 - CA265_RS01575 0.83 +0.0 405,748 + +0.0 405,816 + -0.3 405,909 + +0.5 405,959 + -0.2 406,012 + +0.2 406,012 + +0.6
Or see this region's nucleotide sequence