Experiment: Chloramphenicol 0.0006640625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_2608 and Synpcc7942_2609 are separated by 201 nucleotides Synpcc7942_2609 and cobA overlap by 4 nucleotides cobA and Synpcc7942_2611 are separated by 42 nucleotides Synpcc7942_2611 and thrC are separated by 70 nucleotides
Synpcc7942_2608: Synpcc7942_2608 - hypothetical protein, at 2,691,104 to 2,691,424
_2608
Synpcc7942_2609: Synpcc7942_2609 - hypothetical protein, at 2,691,626 to 2,692,156
_2609
Synpcc7942_2610: cobA - uroporphyrin-III C-methyltransferase, at 2,692,153 to 2,692,950
cobA
Synpcc7942_2611: Synpcc7942_2611 - hypothetical protein, at 2,692,993 to 2,693,757
_2611
Synpcc7942_2612: thrC - threonine synthase, at 2,693,828 to 2,694,928
thrC
Position (kb)
2692
2693 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2691.169 kb on - strand, within Synpcc7942_2608 at 2691.204 kb on + strand, within Synpcc7942_2608 at 2691.212 kb on - strand, within Synpcc7942_2608 at 2691.212 kb on - strand, within Synpcc7942_2608 at 2691.348 kb on - strand, within Synpcc7942_2608 at 2691.396 kb on - strand at 2691.396 kb on - strand at 2691.429 kb on - strand at 2691.434 kb on + strand at 2691.434 kb on - strand at 2691.442 kb on - strand at 2691.443 kb on - strand at 2691.443 kb on - strand at 2691.455 kb on - strand at 2691.465 kb on - strand at 2691.498 kb on - strand at 2691.506 kb on + strand at 2691.507 kb on - strand at 2691.507 kb on - strand at 2691.509 kb on - strand at 2691.547 kb on - strand at 2691.567 kb on + strand at 2691.576 kb on + strand at 2691.609 kb on - strand at 2691.609 kb on - strand at 2691.617 kb on + strand at 2692.118 kb on + strand at 2692.123 kb on + strand at 2692.123 kb on + strand at 2692.145 kb on - strand at 2692.145 kb on - strand at 2692.145 kb on - strand at 2692.146 kb on + strand at 2692.146 kb on + strand at 2692.146 kb on + strand at 2692.216 kb on - strand at 2692.944 kb on + strand at 2693.014 kb on + strand at 2693.697 kb on + strand at 2693.697 kb on + strand at 2693.697 kb on + strand at 2693.705 kb on - strand at 2693.705 kb on - strand at 2693.705 kb on - strand at 2693.705 kb on - strand at 2693.705 kb on - strand at 2693.720 kb on + strand at 2693.728 kb on - strand at 2693.728 kb on - strand at 2693.737 kb on + strand at 2693.750 kb on - strand at 2693.750 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml remove 2,691,169 - Synpcc7942_2608 0.20 -0.0 2,691,204 + Synpcc7942_2608 0.31 -3.4 2,691,212 - Synpcc7942_2608 0.34 -1.6 2,691,212 - Synpcc7942_2608 0.34 -3.0 2,691,348 - Synpcc7942_2608 0.76 -2.0 2,691,396 - -0.9 2,691,396 - -0.0 2,691,429 - -3.2 2,691,434 + +1.3 2,691,434 - +1.3 2,691,442 - +0.4 2,691,443 - -1.4 2,691,443 - -0.0 2,691,455 - -0.5 2,691,465 - +0.4 2,691,498 - -2.9 2,691,506 + +0.5 2,691,507 - +1.3 2,691,507 - +0.5 2,691,509 - -0.0 2,691,547 - -0.6 2,691,567 + +0.4 2,691,576 + -2.1 2,691,609 - +1.5 2,691,609 - +1.0 2,691,617 + -0.5 2,692,118 + +1.3 2,692,123 + +1.5 2,692,123 + -0.0 2,692,145 - -1.0 2,692,145 - +2.0 2,692,145 - -0.0 2,692,146 + +0.1 2,692,146 + -0.3 2,692,146 + -1.0 2,692,216 - -0.4 2,692,944 + -0.5 2,693,014 + -2.0 2,693,697 + -0.0 2,693,697 + +0.9 2,693,697 + +0.7 2,693,705 - -1.0 2,693,705 - +0.4 2,693,705 - -0.0 2,693,705 - +0.5 2,693,705 - +2.0 2,693,720 + +1.5 2,693,728 - -1.5 2,693,728 - +0.8 2,693,737 + -1.0 2,693,750 - -2.9 2,693,750 - +1.5
Or see this region's nucleotide sequence