Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2610

Experiment: Chloramphenicol 0.0006640625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSynpcc7942_2608 and Synpcc7942_2609 are separated by 201 nucleotidesSynpcc7942_2609 and cobA overlap by 4 nucleotidescobA and Synpcc7942_2611 are separated by 42 nucleotidesSynpcc7942_2611 and thrC are separated by 70 nucleotides Synpcc7942_2608: Synpcc7942_2608 - hypothetical protein, at 2,691,104 to 2,691,424 _2608 Synpcc7942_2609: Synpcc7942_2609 - hypothetical protein, at 2,691,626 to 2,692,156 _2609 Synpcc7942_2610: cobA - uroporphyrin-III C-methyltransferase, at 2,692,153 to 2,692,950 cobA Synpcc7942_2611: Synpcc7942_2611 - hypothetical protein, at 2,692,993 to 2,693,757 _2611 Synpcc7942_2612: thrC - threonine synthase, at 2,693,828 to 2,694,928 thrC Position (kb) 2692 2693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2691.169 kb on - strand, within Synpcc7942_2608at 2691.204 kb on + strand, within Synpcc7942_2608at 2691.212 kb on - strand, within Synpcc7942_2608at 2691.212 kb on - strand, within Synpcc7942_2608at 2691.348 kb on - strand, within Synpcc7942_2608at 2691.396 kb on - strandat 2691.396 kb on - strandat 2691.429 kb on - strandat 2691.434 kb on + strandat 2691.434 kb on - strandat 2691.442 kb on - strandat 2691.443 kb on - strandat 2691.443 kb on - strandat 2691.455 kb on - strandat 2691.465 kb on - strandat 2691.498 kb on - strandat 2691.506 kb on + strandat 2691.507 kb on - strandat 2691.507 kb on - strandat 2691.509 kb on - strandat 2691.547 kb on - strandat 2691.567 kb on + strandat 2691.576 kb on + strandat 2691.609 kb on - strandat 2691.609 kb on - strandat 2691.617 kb on + strandat 2692.118 kb on + strandat 2692.123 kb on + strandat 2692.123 kb on + strandat 2692.145 kb on - strandat 2692.145 kb on - strandat 2692.145 kb on - strandat 2692.146 kb on + strandat 2692.146 kb on + strandat 2692.146 kb on + strandat 2692.216 kb on - strandat 2692.944 kb on + strandat 2693.014 kb on + strandat 2693.697 kb on + strandat 2693.697 kb on + strandat 2693.697 kb on + strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.720 kb on + strandat 2693.728 kb on - strandat 2693.728 kb on - strandat 2693.737 kb on + strandat 2693.750 kb on - strandat 2693.750 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml
remove
2,691,169 - Synpcc7942_2608 0.20 -0.0
2,691,204 + Synpcc7942_2608 0.31 -3.4
2,691,212 - Synpcc7942_2608 0.34 -1.6
2,691,212 - Synpcc7942_2608 0.34 -3.0
2,691,348 - Synpcc7942_2608 0.76 -2.0
2,691,396 - -0.9
2,691,396 - -0.0
2,691,429 - -3.2
2,691,434 + +1.3
2,691,434 - +1.3
2,691,442 - +0.4
2,691,443 - -1.4
2,691,443 - -0.0
2,691,455 - -0.5
2,691,465 - +0.4
2,691,498 - -2.9
2,691,506 + +0.5
2,691,507 - +1.3
2,691,507 - +0.5
2,691,509 - -0.0
2,691,547 - -0.6
2,691,567 + +0.4
2,691,576 + -2.1
2,691,609 - +1.5
2,691,609 - +1.0
2,691,617 + -0.5
2,692,118 + +1.3
2,692,123 + +1.5
2,692,123 + -0.0
2,692,145 - -1.0
2,692,145 - +2.0
2,692,145 - -0.0
2,692,146 + +0.1
2,692,146 + -0.3
2,692,146 + -1.0
2,692,216 - -0.4
2,692,944 + -0.5
2,693,014 + -2.0
2,693,697 + -0.0
2,693,697 + +0.9
2,693,697 + +0.7
2,693,705 - -1.0
2,693,705 - +0.4
2,693,705 - -0.0
2,693,705 - +0.5
2,693,705 - +2.0
2,693,720 + +1.5
2,693,728 - -1.5
2,693,728 - +0.8
2,693,737 + -1.0
2,693,750 - -2.9
2,693,750 - +1.5

Or see this region's nucleotide sequence