Experiment: Chloramphenicol 0.0006640625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cmpC and cmpD are separated by 24 nucleotides cmpD and Synpcc7942_1492 are separated by 252 nucleotides Synpcc7942_1492 and mazG are separated by 6 nucleotides
Synpcc7942_1490: cmpC - nitrate transport ATP-binding subunits C and D, at 1,540,818 to 1,542,809
cmpC
Synpcc7942_1491: cmpD - nitrate transport ATP-binding subunits C and D, at 1,542,834 to 1,543,670
cmpD
Synpcc7942_1492: Synpcc7942_1492 - hypothetical protein, at 1,543,923 to 1,544,507
_1492
Synpcc7942_1493: mazG - nucleoside triphosphate pyrophosphohydrolase, at 1,544,514 to 1,545,353
mazG
Position (kb) 1542
1543
1544 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1541.874 kb on + strand, within cmpC at 1541.874 kb on + strand, within cmpC at 1541.880 kb on - strand, within cmpC at 1541.920 kb on + strand, within cmpC at 1541.928 kb on - strand, within cmpC at 1541.928 kb on - strand, within cmpC at 1541.928 kb on - strand, within cmpC at 1541.928 kb on - strand, within cmpC at 1541.930 kb on + strand, within cmpC at 1541.930 kb on + strand, within cmpC at 1541.930 kb on + strand, within cmpC at 1541.930 kb on + strand, within cmpC at 1541.930 kb on + strand, within cmpC at 1541.932 kb on + strand, within cmpC at 1541.938 kb on - strand, within cmpC at 1541.938 kb on - strand, within cmpC at 1541.938 kb on - strand, within cmpC at 1541.938 kb on - strand, within cmpC at 1541.953 kb on + strand, within cmpC at 1541.998 kb on - strand, within cmpC at 1542.019 kb on - strand, within cmpC at 1542.031 kb on - strand, within cmpC at 1542.064 kb on - strand, within cmpC at 1542.099 kb on + strand, within cmpC at 1542.099 kb on + strand, within cmpC at 1542.113 kb on + strand, within cmpC at 1542.148 kb on - strand at 1542.177 kb on - strand, within cmpC at 1542.177 kb on - strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.179 kb on + strand, within cmpC at 1542.187 kb on - strand, within cmpC at 1542.187 kb on - strand, within cmpC at 1542.187 kb on - strand, within cmpC at 1542.187 kb on - strand, within cmpC at 1542.187 kb on - strand, within cmpC at 1542.282 kb on - strand, within cmpC at 1542.315 kb on + strand, within cmpC at 1542.320 kb on + strand, within cmpC at 1542.328 kb on - strand, within cmpC at 1542.328 kb on - strand, within cmpC at 1542.328 kb on - strand, within cmpC at 1542.328 kb on - strand, within cmpC at 1542.332 kb on + strand, within cmpC at 1542.341 kb on - strand, within cmpC at 1542.350 kb on - strand, within cmpC at 1542.378 kb on - strand, within cmpC at 1542.387 kb on + strand, within cmpC at 1542.387 kb on + strand, within cmpC at 1542.395 kb on - strand, within cmpC at 1542.395 kb on - strand, within cmpC at 1542.397 kb on - strand, within cmpC at 1542.405 kb on + strand, within cmpC at 1542.405 kb on + strand, within cmpC at 1542.410 kb on + strand, within cmpC at 1542.415 kb on + strand, within cmpC at 1542.415 kb on + strand, within cmpC at 1542.415 kb on + strand, within cmpC at 1542.422 kb on + strand, within cmpC at 1542.423 kb on + strand, within cmpC at 1542.423 kb on - strand, within cmpC at 1542.424 kb on + strand, within cmpC at 1542.450 kb on + strand, within cmpC at 1542.489 kb on - strand, within cmpC at 1542.500 kb on - strand, within cmpC at 1542.500 kb on - strand, within cmpC at 1542.511 kb on + strand, within cmpC at 1542.516 kb on + strand, within cmpC at 1542.546 kb on + strand, within cmpC at 1542.555 kb on + strand, within cmpC at 1542.604 kb on - strand, within cmpC at 1542.612 kb on - strand at 1542.614 kb on + strand at 1542.614 kb on + strand at 1542.671 kb on - strand at 1542.686 kb on + strand at 1542.686 kb on + strand at 1542.694 kb on - strand at 1542.704 kb on - strand at 1542.717 kb on - strand at 1542.736 kb on - strand at 1542.754 kb on + strand at 1542.823 kb on + strand at 1542.824 kb on - strand at 1542.938 kb on + strand, within cmpD at 1542.938 kb on + strand, within cmpD at 1542.946 kb on - strand, within cmpD at 1542.948 kb on + strand, within cmpD at 1542.948 kb on + strand, within cmpD at 1542.964 kb on + strand, within cmpD at 1542.980 kb on - strand, within cmpD at 1542.980 kb on - strand, within cmpD at 1543.037 kb on - strand, within cmpD at 1543.037 kb on - strand, within cmpD at 1543.053 kb on + strand, within cmpD at 1543.062 kb on + strand, within cmpD at 1543.085 kb on + strand at 1543.087 kb on - strand, within cmpD at 1543.094 kb on - strand, within cmpD at 1543.094 kb on - strand, within cmpD at 1543.153 kb on + strand, within cmpD at 1543.208 kb on - strand, within cmpD at 1543.245 kb on + strand, within cmpD at 1543.292 kb on + strand, within cmpD at 1543.300 kb on - strand, within cmpD at 1543.303 kb on + strand, within cmpD at 1543.442 kb on + strand, within cmpD at 1543.452 kb on + strand, within cmpD at 1543.452 kb on + strand, within cmpD at 1543.490 kb on - strand, within cmpD at 1543.559 kb on - strand, within cmpD at 1543.561 kb on + strand, within cmpD at 1543.586 kb on + strand, within cmpD at 1543.594 kb on - strand at 1543.604 kb on + strand at 1543.604 kb on + strand at 1543.606 kb on + strand at 1543.606 kb on + strand at 1543.606 kb on + strand at 1543.606 kb on + strand at 1543.612 kb on - strand at 1543.614 kb on - strand at 1543.614 kb on - strand at 1543.667 kb on - strand at 1543.670 kb on + strand at 1543.682 kb on + strand at 1543.688 kb on + strand at 1543.791 kb on + strand at 1543.791 kb on + strand at 1543.792 kb on - strand at 1543.792 kb on - strand at 1543.799 kb on - strand at 1543.799 kb on - strand at 1543.814 kb on + strand at 1543.861 kb on + strand at 1543.869 kb on - strand at 1543.879 kb on - strand at 1543.917 kb on + strand at 1543.925 kb on - strand at 1544.035 kb on - strand, within Synpcc7942_1492 at 1544.067 kb on - strand, within Synpcc7942_1492 at 1544.072 kb on + strand, within Synpcc7942_1492 at 1544.120 kb on - strand, within Synpcc7942_1492 at 1544.132 kb on + strand, within Synpcc7942_1492 at 1544.140 kb on - strand, within Synpcc7942_1492 at 1544.140 kb on - strand, within Synpcc7942_1492 at 1544.150 kb on - strand, within Synpcc7942_1492 at 1544.163 kb on - strand, within Synpcc7942_1492 at 1544.211 kb on + strand, within Synpcc7942_1492 at 1544.211 kb on + strand, within Synpcc7942_1492 at 1544.211 kb on + strand, within Synpcc7942_1492 at 1544.211 kb on + strand, within Synpcc7942_1492 at 1544.269 kb on + strand, within Synpcc7942_1492 at 1544.279 kb on + strand, within Synpcc7942_1492 at 1544.295 kb on + strand, within Synpcc7942_1492 at 1544.295 kb on + strand, within Synpcc7942_1492 at 1544.298 kb on - strand, within Synpcc7942_1492 at 1544.303 kb on - strand, within Synpcc7942_1492 at 1544.310 kb on - strand, within Synpcc7942_1492 at 1544.329 kb on + strand, within Synpcc7942_1492 at 1544.335 kb on + strand, within Synpcc7942_1492 at 1544.338 kb on - strand, within Synpcc7942_1492 at 1544.340 kb on + strand, within Synpcc7942_1492 at 1544.340 kb on + strand, within Synpcc7942_1492 at 1544.340 kb on + strand, within Synpcc7942_1492 at 1544.347 kb on + strand, within Synpcc7942_1492 at 1544.348 kb on - strand, within Synpcc7942_1492 at 1544.348 kb on - strand, within Synpcc7942_1492 at 1544.348 kb on - strand, within Synpcc7942_1492 at 1544.373 kb on + strand, within Synpcc7942_1492 at 1544.391 kb on - strand, within Synpcc7942_1492 at 1544.405 kb on - strand, within Synpcc7942_1492 at 1544.433 kb on + strand at 1544.457 kb on + strand at 1544.465 kb on - strand at 1544.542 kb on - strand at 1544.583 kb on - strand at 1544.598 kb on - strand, within mazG at 1544.603 kb on + strand, within mazG at 1544.616 kb on + strand, within mazG at 1544.624 kb on - strand, within mazG at 1544.628 kb on + strand, within mazG at 1544.634 kb on - strand, within mazG at 1544.636 kb on - strand, within mazG
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml remove 1,541,874 + cmpC Synpcc7942_1490 0.53 -0.0 1,541,874 + cmpC Synpcc7942_1490 0.53 -0.0 1,541,880 - cmpC Synpcc7942_1490 0.53 -0.0 1,541,920 + cmpC Synpcc7942_1490 0.55 +0.6 1,541,928 - cmpC Synpcc7942_1490 0.56 -1.3 1,541,928 - cmpC Synpcc7942_1490 0.56 -0.0 1,541,928 - cmpC Synpcc7942_1490 0.56 +0.4 1,541,928 - cmpC Synpcc7942_1490 0.56 -2.6 1,541,930 + cmpC Synpcc7942_1490 0.56 -1.6 1,541,930 + cmpC Synpcc7942_1490 0.56 +2.0 1,541,930 + cmpC Synpcc7942_1490 0.56 -1.0 1,541,930 + cmpC Synpcc7942_1490 0.56 -2.8 1,541,930 + cmpC Synpcc7942_1490 0.56 -0.0 1,541,932 + cmpC Synpcc7942_1490 0.56 -2.0 1,541,938 - cmpC Synpcc7942_1490 0.56 -0.7 1,541,938 - cmpC Synpcc7942_1490 0.56 +0.6 1,541,938 - cmpC Synpcc7942_1490 0.56 +1.1 1,541,938 - cmpC Synpcc7942_1490 0.56 -0.0 1,541,953 + cmpC Synpcc7942_1490 0.57 -1.0 1,541,998 - cmpC Synpcc7942_1490 0.59 +0.4 1,542,019 - cmpC Synpcc7942_1490 0.60 +1.0 1,542,031 - cmpC Synpcc7942_1490 0.61 +1.4 1,542,064 - cmpC Synpcc7942_1490 0.63 -2.8 1,542,099 + cmpC Synpcc7942_1490 0.64 -1.0 1,542,099 + cmpC Synpcc7942_1490 0.64 -1.4 1,542,113 + cmpC Synpcc7942_1490 0.65 -0.0 1,542,148 - -0.0 1,542,177 - cmpC Synpcc7942_1490 0.68 -1.4 1,542,177 - cmpC Synpcc7942_1490 0.68 +0.6 1,542,179 + cmpC Synpcc7942_1490 0.68 -1.8 1,542,179 + cmpC Synpcc7942_1490 0.68 -0.5 1,542,179 + cmpC Synpcc7942_1490 0.68 +0.6 1,542,179 + cmpC Synpcc7942_1490 0.68 -0.0 1,542,179 + cmpC Synpcc7942_1490 0.68 -1.4 1,542,179 + cmpC Synpcc7942_1490 0.68 -1.0 1,542,179 + cmpC Synpcc7942_1490 0.68 -1.0 1,542,187 - cmpC Synpcc7942_1490 0.69 -2.9 1,542,187 - cmpC Synpcc7942_1490 0.69 -2.0 1,542,187 - cmpC Synpcc7942_1490 0.69 +0.6 1,542,187 - cmpC Synpcc7942_1490 0.69 -0.0 1,542,187 - cmpC Synpcc7942_1490 0.69 -0.0 1,542,282 - cmpC Synpcc7942_1490 0.73 -1.0 1,542,315 + cmpC Synpcc7942_1490 0.75 -3.0 1,542,320 + cmpC Synpcc7942_1490 0.75 -0.0 1,542,328 - cmpC Synpcc7942_1490 0.76 -1.0 1,542,328 - cmpC Synpcc7942_1490 0.76 -1.0 1,542,328 - cmpC Synpcc7942_1490 0.76 -1.6 1,542,328 - cmpC Synpcc7942_1490 0.76 -0.3 1,542,332 + cmpC Synpcc7942_1490 0.76 -2.6 1,542,341 - cmpC Synpcc7942_1490 0.76 -1.0 1,542,350 - cmpC Synpcc7942_1490 0.77 -0.6 1,542,378 - cmpC Synpcc7942_1490 0.78 -0.8 1,542,387 + cmpC Synpcc7942_1490 0.79 +0.6 1,542,387 + cmpC Synpcc7942_1490 0.79 -0.6 1,542,395 - cmpC Synpcc7942_1490 0.79 -0.6 1,542,395 - cmpC Synpcc7942_1490 0.79 -0.8 1,542,397 - cmpC Synpcc7942_1490 0.79 +1.2 1,542,405 + cmpC Synpcc7942_1490 0.80 +0.6 1,542,405 + cmpC Synpcc7942_1490 0.80 +2.0 1,542,410 + cmpC Synpcc7942_1490 0.80 -1.6 1,542,415 + cmpC Synpcc7942_1490 0.80 +1.0 1,542,415 + cmpC Synpcc7942_1490 0.80 -1.0 1,542,415 + cmpC Synpcc7942_1490 0.80 -2.6 1,542,422 + cmpC Synpcc7942_1490 0.81 -1.0 1,542,423 + cmpC Synpcc7942_1490 0.81 -2.4 1,542,423 - cmpC Synpcc7942_1490 0.81 -1.6 1,542,424 + cmpC Synpcc7942_1490 0.81 +1.0 1,542,450 + cmpC Synpcc7942_1490 0.82 -1.8 1,542,489 - cmpC Synpcc7942_1490 0.84 -0.9 1,542,500 - cmpC Synpcc7942_1490 0.84 -0.0 1,542,500 - cmpC Synpcc7942_1490 0.84 -2.3 1,542,511 + cmpC Synpcc7942_1490 0.85 -1.3 1,542,516 + cmpC Synpcc7942_1490 0.85 -1.0 1,542,546 + cmpC Synpcc7942_1490 0.87 -0.4 1,542,555 + cmpC Synpcc7942_1490 0.87 -1.6 1,542,604 - cmpC Synpcc7942_1490 0.90 +1.3 1,542,612 - -0.0 1,542,614 + -0.6 1,542,614 + -0.0 1,542,671 - -0.6 1,542,686 + -0.0 1,542,686 + +1.0 1,542,694 - -1.5 1,542,704 - -1.0 1,542,717 - -1.6 1,542,736 - -1.9 1,542,754 + +0.3 1,542,823 + -1.4 1,542,824 - -2.4 1,542,938 + cmpD Synpcc7942_1491 0.12 +2.0 1,542,938 + cmpD Synpcc7942_1491 0.12 +1.0 1,542,946 - cmpD Synpcc7942_1491 0.13 -1.0 1,542,948 + cmpD Synpcc7942_1491 0.14 -1.0 1,542,948 + cmpD Synpcc7942_1491 0.14 +0.1 1,542,964 + cmpD Synpcc7942_1491 0.16 -3.0 1,542,980 - cmpD Synpcc7942_1491 0.17 -0.0 1,542,980 - cmpD Synpcc7942_1491 0.17 -0.0 1,543,037 - cmpD Synpcc7942_1491 0.24 -0.0 1,543,037 - cmpD Synpcc7942_1491 0.24 -1.6 1,543,053 + cmpD Synpcc7942_1491 0.26 -0.0 1,543,062 + cmpD Synpcc7942_1491 0.27 -3.4 1,543,085 + -0.6 1,543,087 - cmpD Synpcc7942_1491 0.30 -0.0 1,543,094 - cmpD Synpcc7942_1491 0.31 -1.0 1,543,094 - cmpD Synpcc7942_1491 0.31 +1.8 1,543,153 + cmpD Synpcc7942_1491 0.38 -1.6 1,543,208 - cmpD Synpcc7942_1491 0.45 -1.6 1,543,245 + cmpD Synpcc7942_1491 0.49 -2.6 1,543,292 + cmpD Synpcc7942_1491 0.55 -1.0 1,543,300 - cmpD Synpcc7942_1491 0.56 -2.0 1,543,303 + cmpD Synpcc7942_1491 0.56 +1.0 1,543,442 + cmpD Synpcc7942_1491 0.73 -1.6 1,543,452 + cmpD Synpcc7942_1491 0.74 -2.6 1,543,452 + cmpD Synpcc7942_1491 0.74 -1.6 1,543,490 - cmpD Synpcc7942_1491 0.78 -2.4 1,543,559 - cmpD Synpcc7942_1491 0.87 -1.0 1,543,561 + cmpD Synpcc7942_1491 0.87 -0.0 1,543,586 + cmpD Synpcc7942_1491 0.90 -0.0 1,543,594 - -0.6 1,543,604 + -0.0 1,543,604 + -1.9 1,543,606 + -2.4 1,543,606 + +1.0 1,543,606 + -1.8 1,543,606 + -0.0 1,543,612 - -0.0 1,543,614 - -0.0 1,543,614 - -1.8 1,543,667 - -0.0 1,543,670 + +1.0 1,543,682 + +2.6 1,543,688 + +1.8 1,543,791 + +2.1 1,543,791 + +1.0 1,543,792 - +1.0 1,543,792 - -0.6 1,543,799 - -0.0 1,543,799 - -0.0 1,543,814 + -0.0 1,543,861 + +1.0 1,543,869 - +0.3 1,543,879 - -1.4 1,543,917 + -0.4 1,543,925 - +1.1 1,544,035 - Synpcc7942_1492 0.19 -0.0 1,544,067 - Synpcc7942_1492 0.25 +1.5 1,544,072 + Synpcc7942_1492 0.25 -0.0 1,544,120 - Synpcc7942_1492 0.34 +2.1 1,544,132 + Synpcc7942_1492 0.36 -0.3 1,544,140 - Synpcc7942_1492 0.37 -0.6 1,544,140 - Synpcc7942_1492 0.37 -0.0 1,544,150 - Synpcc7942_1492 0.39 -0.5 1,544,163 - Synpcc7942_1492 0.41 +0.4 1,544,211 + Synpcc7942_1492 0.49 -1.2 1,544,211 + Synpcc7942_1492 0.49 +0.5 1,544,211 + Synpcc7942_1492 0.49 -0.0 1,544,211 + Synpcc7942_1492 0.49 -1.0 1,544,269 + Synpcc7942_1492 0.59 -1.0 1,544,279 + Synpcc7942_1492 0.61 +2.3 1,544,295 + Synpcc7942_1492 0.64 -1.0 1,544,295 + Synpcc7942_1492 0.64 +1.6 1,544,298 - Synpcc7942_1492 0.64 -0.6 1,544,303 - Synpcc7942_1492 0.65 +1.7 1,544,310 - Synpcc7942_1492 0.66 +0.6 1,544,329 + Synpcc7942_1492 0.69 -0.0 1,544,335 + Synpcc7942_1492 0.70 +0.5 1,544,338 - Synpcc7942_1492 0.71 +1.0 1,544,340 + Synpcc7942_1492 0.71 -0.4 1,544,340 + Synpcc7942_1492 0.71 +1.0 1,544,340 + Synpcc7942_1492 0.71 -2.4 1,544,347 + Synpcc7942_1492 0.72 +1.0 1,544,348 - Synpcc7942_1492 0.73 +2.0 1,544,348 - Synpcc7942_1492 0.73 +1.0 1,544,348 - Synpcc7942_1492 0.73 -3.6 1,544,373 + Synpcc7942_1492 0.77 +2.0 1,544,391 - Synpcc7942_1492 0.80 -1.3 1,544,405 - Synpcc7942_1492 0.82 -1.6 1,544,433 + -0.0 1,544,457 + -0.0 1,544,465 - -1.6 1,544,542 - -0.0 1,544,583 - -0.6 1,544,598 - mazG Synpcc7942_1493 0.10 -0.2 1,544,603 + mazG Synpcc7942_1493 0.11 -1.4 1,544,616 + mazG Synpcc7942_1493 0.12 -0.0 1,544,624 - mazG Synpcc7942_1493 0.13 -0.0 1,544,628 + mazG Synpcc7942_1493 0.14 -0.0 1,544,634 - mazG Synpcc7942_1493 0.14 -0.4 1,544,636 - mazG Synpcc7942_1493 0.15 -0.7
Or see this region's nucleotide sequence