Experiment: Chloramphenicol 0.0006640625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ugd and Synpcc7942_0974 are separated by 36 nucleotides Synpcc7942_0974 and mraW are separated by 116 nucleotides mraW and Synpcc7942_0976 are separated by 23 nucleotides
Synpcc7942_0973: ugd - UDP-glucose 6-dehydrogenase, at 979,758 to 980,930
ugd
Synpcc7942_0974: Synpcc7942_0974 - UDP-glucose dehydrogenase, at 980,967 to 981,137
_0974
Synpcc7942_0975: mraW - S-adenosyl-methyltransferase MraW, at 981,254 to 982,144
mraW
Synpcc7942_0976: Synpcc7942_0976 - CBS, at 982,168 to 984,897
_0976
Position (kb) 981
982
983 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 980.271 kb on - strand, within ugd at 980.274 kb on + strand, within ugd at 980.277 kb on - strand, within ugd at 980.279 kb on + strand, within ugd at 980.318 kb on + strand, within ugd at 980.353 kb on - strand, within ugd at 980.362 kb on + strand, within ugd at 980.362 kb on + strand, within ugd at 980.370 kb on - strand, within ugd at 980.433 kb on + strand, within ugd at 980.440 kb on + strand, within ugd at 980.453 kb on - strand, within ugd at 980.463 kb on - strand, within ugd at 980.472 kb on + strand, within ugd at 980.527 kb on + strand, within ugd at 980.534 kb on - strand, within ugd at 980.562 kb on + strand, within ugd at 980.562 kb on + strand, within ugd at 980.570 kb on - strand, within ugd at 980.570 kb on - strand, within ugd at 980.581 kb on + strand, within ugd at 980.590 kb on - strand, within ugd at 980.629 kb on + strand, within ugd at 980.637 kb on - strand, within ugd at 980.639 kb on + strand, within ugd at 980.639 kb on + strand, within ugd at 980.647 kb on - strand, within ugd at 980.647 kb on - strand, within ugd at 980.657 kb on - strand, within ugd at 980.697 kb on - strand, within ugd at 980.744 kb on - strand, within ugd at 980.746 kb on - strand, within ugd at 980.782 kb on + strand, within ugd at 980.805 kb on + strand, within ugd at 980.821 kb on - strand at 980.837 kb on - strand at 980.855 kb on - strand at 980.855 kb on - strand at 980.868 kb on + strand at 980.912 kb on - strand at 980.924 kb on + strand at 980.930 kb on + strand at 980.930 kb on + strand at 980.935 kb on + strand at 980.941 kb on + strand at 980.949 kb on - strand at 981.024 kb on - strand, within Synpcc7942_0974 at 981.077 kb on + strand, within Synpcc7942_0974 at 981.123 kb on - strand at 981.123 kb on - strand at 981.127 kb on - strand at 981.164 kb on + strand at 981.166 kb on + strand at 981.200 kb on + strand at 981.207 kb on + strand at 981.208 kb on - strand at 981.209 kb on - strand at 981.212 kb on + strand at 981.213 kb on + strand at 981.215 kb on - strand at 981.215 kb on - strand at 981.215 kb on - strand at 981.220 kb on - strand at 981.232 kb on - strand at 981.232 kb on - strand at 981.232 kb on - strand at 981.247 kb on - strand at 981.247 kb on - strand at 981.252 kb on + strand at 981.260 kb on - strand at 981.343 kb on - strand, within mraW at 981.347 kb on + strand, within mraW at 981.371 kb on - strand, within mraW at 981.375 kb on + strand, within mraW at 981.398 kb on + strand, within mraW at 981.406 kb on + strand, within mraW at 981.406 kb on + strand, within mraW at 981.425 kb on + strand, within mraW at 981.430 kb on + strand, within mraW at 981.470 kb on + strand, within mraW at 981.479 kb on + strand, within mraW at 981.488 kb on - strand, within mraW at 981.510 kb on + strand, within mraW at 981.522 kb on + strand, within mraW at 981.522 kb on + strand, within mraW at 981.530 kb on - strand, within mraW at 981.530 kb on - strand, within mraW at 981.579 kb on + strand, within mraW at 981.601 kb on + strand, within mraW at 981.601 kb on + strand, within mraW at 981.609 kb on - strand, within mraW at 981.609 kb on - strand, within mraW at 981.643 kb on + strand, within mraW at 981.651 kb on - strand, within mraW at 981.804 kb on + strand, within mraW at 981.804 kb on + strand, within mraW at 981.804 kb on + strand, within mraW at 981.808 kb on + strand, within mraW at 981.812 kb on - strand, within mraW at 981.829 kb on + strand, within mraW at 981.878 kb on - strand, within mraW at 981.879 kb on - strand, within mraW at 981.894 kb on + strand, within mraW at 981.923 kb on - strand, within mraW at 981.923 kb on - strand, within mraW at 981.939 kb on - strand, within mraW at 981.940 kb on - strand, within mraW at 981.966 kb on - strand, within mraW at 981.984 kb on + strand, within mraW at 981.997 kb on - strand, within mraW at 981.997 kb on - strand, within mraW at 982.028 kb on + strand, within mraW at 982.067 kb on + strand at 982.093 kb on + strand at 982.096 kb on + strand at 982.098 kb on + strand at 982.099 kb on - strand at 982.154 kb on + strand at 982.162 kb on - strand at 982.162 kb on - strand at 982.166 kb on + strand at 982.758 kb on + strand, within Synpcc7942_0976 at 982.766 kb on - strand, within Synpcc7942_0976 at 982.766 kb on - strand, within Synpcc7942_0976
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml remove 980,271 - ugd Synpcc7942_0973 0.44 -1.1 980,274 + ugd Synpcc7942_0973 0.44 +0.6 980,277 - ugd Synpcc7942_0973 0.44 +0.3 980,279 + ugd Synpcc7942_0973 0.44 -1.1 980,318 + ugd Synpcc7942_0973 0.48 -0.1 980,353 - ugd Synpcc7942_0973 0.51 -0.1 980,362 + ugd Synpcc7942_0973 0.51 +1.9 980,362 + ugd Synpcc7942_0973 0.51 -2.1 980,370 - ugd Synpcc7942_0973 0.52 +0.5 980,433 + ugd Synpcc7942_0973 0.58 +1.5 980,440 + ugd Synpcc7942_0973 0.58 -0.1 980,453 - ugd Synpcc7942_0973 0.59 +1.9 980,463 - ugd Synpcc7942_0973 0.60 -0.0 980,472 + ugd Synpcc7942_0973 0.61 -0.5 980,527 + ugd Synpcc7942_0973 0.66 +0.5 980,534 - ugd Synpcc7942_0973 0.66 +0.3 980,562 + ugd Synpcc7942_0973 0.69 -0.1 980,562 + ugd Synpcc7942_0973 0.69 +1.9 980,570 - ugd Synpcc7942_0973 0.69 +0.9 980,570 - ugd Synpcc7942_0973 0.69 -0.1 980,581 + ugd Synpcc7942_0973 0.70 +0.9 980,590 - ugd Synpcc7942_0973 0.71 +1.3 980,629 + ugd Synpcc7942_0973 0.74 +0.2 980,637 - ugd Synpcc7942_0973 0.75 -0.1 980,639 + ugd Synpcc7942_0973 0.75 +0.0 980,639 + ugd Synpcc7942_0973 0.75 -0.7 980,647 - ugd Synpcc7942_0973 0.76 -0.3 980,647 - ugd Synpcc7942_0973 0.76 -0.1 980,657 - ugd Synpcc7942_0973 0.77 -0.7 980,697 - ugd Synpcc7942_0973 0.80 -1.4 980,744 - ugd Synpcc7942_0973 0.84 +1.1 980,746 - ugd Synpcc7942_0973 0.84 +1.5 980,782 + ugd Synpcc7942_0973 0.87 -1.1 980,805 + ugd Synpcc7942_0973 0.89 -2.1 980,821 - -1.7 980,837 - -0.1 980,855 - +1.2 980,855 - -2.1 980,868 + +3.7 980,912 - +0.7 980,924 + +1.9 980,930 + -0.7 980,930 + -0.1 980,935 + -0.1 980,941 + +1.9 980,949 - +0.3 981,024 - Synpcc7942_0974 0.33 +0.5 981,077 + Synpcc7942_0974 0.64 +1.5 981,123 - -0.5 981,123 - +0.9 981,127 - +1.0 981,164 + -2.1 981,166 + -0.1 981,200 + -2.1 981,207 + -1.1 981,208 - +0.5 981,209 - -0.3 981,212 + +0.7 981,213 + +1.9 981,215 - +1.8 981,215 - +0.7 981,215 - -0.1 981,220 - -0.3 981,232 - -0.5 981,232 - +0.3 981,232 - +0.4 981,247 - +0.9 981,247 - +0.5 981,252 + +1.2 981,260 - -0.2 981,343 - mraW Synpcc7942_0975 0.10 -1.7 981,347 + mraW Synpcc7942_0975 0.10 -0.5 981,371 - mraW Synpcc7942_0975 0.13 -2.1 981,375 + mraW Synpcc7942_0975 0.14 -0.1 981,398 + mraW Synpcc7942_0975 0.16 -0.1 981,406 + mraW Synpcc7942_0975 0.17 -1.1 981,406 + mraW Synpcc7942_0975 0.17 -2.1 981,425 + mraW Synpcc7942_0975 0.19 -1.9 981,430 + mraW Synpcc7942_0975 0.20 -1.7 981,470 + mraW Synpcc7942_0975 0.24 -1.1 981,479 + mraW Synpcc7942_0975 0.25 +0.5 981,488 - mraW Synpcc7942_0975 0.26 -0.1 981,510 + mraW Synpcc7942_0975 0.29 -1.1 981,522 + mraW Synpcc7942_0975 0.30 -0.7 981,522 + mraW Synpcc7942_0975 0.30 -1.7 981,530 - mraW Synpcc7942_0975 0.31 -1.5 981,530 - mraW Synpcc7942_0975 0.31 +0.5 981,579 + mraW Synpcc7942_0975 0.36 -2.1 981,601 + mraW Synpcc7942_0975 0.39 -0.1 981,601 + mraW Synpcc7942_0975 0.39 -1.7 981,609 - mraW Synpcc7942_0975 0.40 -1.1 981,609 - mraW Synpcc7942_0975 0.40 +0.7 981,643 + mraW Synpcc7942_0975 0.44 +0.9 981,651 - mraW Synpcc7942_0975 0.45 -1.1 981,804 + mraW Synpcc7942_0975 0.62 -1.1 981,804 + mraW Synpcc7942_0975 0.62 -0.1 981,804 + mraW Synpcc7942_0975 0.62 -1.1 981,808 + mraW Synpcc7942_0975 0.62 -2.1 981,812 - mraW Synpcc7942_0975 0.63 -0.1 981,829 + mraW Synpcc7942_0975 0.65 -1.9 981,878 - mraW Synpcc7942_0975 0.70 -0.1 981,879 - mraW Synpcc7942_0975 0.70 -2.7 981,894 + mraW Synpcc7942_0975 0.72 -1.7 981,923 - mraW Synpcc7942_0975 0.75 -2.7 981,923 - mraW Synpcc7942_0975 0.75 -0.8 981,939 - mraW Synpcc7942_0975 0.77 -0.1 981,940 - mraW Synpcc7942_0975 0.77 -1.1 981,966 - mraW Synpcc7942_0975 0.80 -0.1 981,984 + mraW Synpcc7942_0975 0.82 -1.1 981,997 - mraW Synpcc7942_0975 0.83 -1.4 981,997 - mraW Synpcc7942_0975 0.83 -0.1 982,028 + mraW Synpcc7942_0975 0.87 -0.7 982,067 + +0.9 982,093 + -0.1 982,096 + -2.0 982,098 + -1.7 982,099 - -0.1 982,154 + +1.0 982,162 - -2.1 982,162 - -0.1 982,166 + +0.3 982,758 + Synpcc7942_0976 0.22 -1.1 982,766 - Synpcc7942_0976 0.22 +1.9 982,766 - Synpcc7942_0976 0.22 -1.7
Or see this region's nucleotide sequence