Experiment: Chloramphenicol 0.0006640625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0610 and mutS are separated by 38 nucleotides mutS and gltA are separated by 3 nucleotides
Synpcc7942_0610: Synpcc7942_0610 - hypothetical protein, at 597,977 to 599,776
_0610
Synpcc7942_0611: mutS - recombination and DNA strand exchange inhibitor protein, at 599,815 to 602,205
mutS
Synpcc7942_0612: gltA - methylcitrate synthase, at 602,209 to 603,369
gltA
Position (kb) 599
600
601
602
603 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 598.844 kb on + strand, within Synpcc7942_0610 at 598.869 kb on + strand, within Synpcc7942_0610 at 598.895 kb on - strand, within Synpcc7942_0610 at 598.984 kb on - strand, within Synpcc7942_0610 at 599.003 kb on + strand, within Synpcc7942_0610 at 599.004 kb on + strand, within Synpcc7942_0610 at 599.008 kb on + strand, within Synpcc7942_0610 at 599.014 kb on - strand, within Synpcc7942_0610 at 599.014 kb on - strand, within Synpcc7942_0610 at 599.028 kb on - strand, within Synpcc7942_0610 at 599.073 kb on - strand, within Synpcc7942_0610 at 599.092 kb on + strand, within Synpcc7942_0610 at 599.097 kb on + strand, within Synpcc7942_0610 at 599.098 kb on - strand, within Synpcc7942_0610 at 599.098 kb on - strand, within Synpcc7942_0610 at 599.098 kb on - strand, within Synpcc7942_0610 at 599.112 kb on + strand, within Synpcc7942_0610 at 599.120 kb on - strand, within Synpcc7942_0610 at 599.132 kb on - strand, within Synpcc7942_0610 at 599.134 kb on + strand, within Synpcc7942_0610 at 599.141 kb on + strand, within Synpcc7942_0610 at 599.141 kb on + strand, within Synpcc7942_0610 at 599.142 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.149 kb on - strand, within Synpcc7942_0610 at 599.156 kb on - strand, within Synpcc7942_0610 at 599.202 kb on + strand, within Synpcc7942_0610 at 599.372 kb on + strand, within Synpcc7942_0610 at 599.380 kb on - strand, within Synpcc7942_0610 at 599.422 kb on - strand, within Synpcc7942_0610 at 599.481 kb on + strand, within Synpcc7942_0610 at 599.489 kb on - strand, within Synpcc7942_0610 at 599.489 kb on - strand, within Synpcc7942_0610 at 599.489 kb on - strand, within Synpcc7942_0610 at 599.503 kb on + strand, within Synpcc7942_0610 at 599.511 kb on - strand, within Synpcc7942_0610 at 599.521 kb on - strand, within Synpcc7942_0610 at 599.523 kb on - strand, within Synpcc7942_0610 at 599.528 kb on + strand, within Synpcc7942_0610 at 599.528 kb on + strand, within Synpcc7942_0610 at 599.528 kb on + strand, within Synpcc7942_0610 at 599.528 kb on + strand, within Synpcc7942_0610 at 599.536 kb on - strand, within Synpcc7942_0610 at 599.536 kb on - strand, within Synpcc7942_0610 at 599.536 kb on - strand, within Synpcc7942_0610 at 599.536 kb on - strand, within Synpcc7942_0610 at 599.543 kb on - strand, within Synpcc7942_0610 at 599.559 kb on - strand, within Synpcc7942_0610 at 599.559 kb on - strand, within Synpcc7942_0610 at 599.559 kb on - strand, within Synpcc7942_0610 at 599.593 kb on - strand, within Synpcc7942_0610 at 599.615 kb on + strand at 599.616 kb on + strand at 599.660 kb on + strand at 599.660 kb on + strand at 599.688 kb on + strand at 599.700 kb on + strand at 599.721 kb on - strand at 599.792 kb on - strand at 599.839 kb on - strand at 599.845 kb on + strand at 599.905 kb on + strand at 599.905 kb on + strand at 599.905 kb on + strand at 599.913 kb on - strand at 599.913 kb on - strand at 599.913 kb on - strand at 599.913 kb on - strand at 599.948 kb on + strand at 599.991 kb on - strand at 600.003 kb on - strand at 600.010 kb on - strand at 600.010 kb on - strand at 600.012 kb on + strand at 600.012 kb on + strand at 600.012 kb on + strand at 600.012 kb on + strand at 600.020 kb on - strand at 600.020 kb on - strand at 600.020 kb on - strand at 600.020 kb on - strand at 600.026 kb on + strand at 600.027 kb on - strand at 600.027 kb on - strand at 600.027 kb on - strand at 600.049 kb on + strand at 600.055 kb on + strand, within mutS at 600.090 kb on - strand, within mutS at 600.090 kb on - strand, within mutS at 600.090 kb on - strand, within mutS at 600.110 kb on - strand, within mutS at 600.112 kb on + strand, within mutS at 600.177 kb on - strand, within mutS at 600.199 kb on - strand, within mutS at 600.212 kb on - strand, within mutS at 600.212 kb on - strand, within mutS at 600.247 kb on - strand, within mutS at 600.249 kb on - strand, within mutS at 600.267 kb on - strand, within mutS at 600.283 kb on + strand, within mutS at 600.285 kb on + strand, within mutS at 600.285 kb on + strand, within mutS at 600.291 kb on - strand, within mutS at 600.291 kb on - strand, within mutS at 600.325 kb on + strand, within mutS at 600.344 kb on - strand, within mutS at 600.368 kb on - strand, within mutS at 600.417 kb on + strand, within mutS at 600.432 kb on + strand, within mutS at 600.440 kb on - strand, within mutS at 600.464 kb on + strand, within mutS at 600.464 kb on + strand, within mutS at 600.488 kb on + strand, within mutS at 600.488 kb on + strand, within mutS at 600.494 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.496 kb on - strand, within mutS at 600.503 kb on + strand, within mutS at 600.503 kb on + strand, within mutS at 600.511 kb on - strand, within mutS at 600.542 kb on - strand, within mutS at 600.550 kb on + strand, within mutS at 600.553 kb on - strand at 600.558 kb on + strand, within mutS at 600.566 kb on - strand at 600.566 kb on - strand, within mutS at 600.566 kb on - strand, within mutS at 600.620 kb on - strand, within mutS at 600.643 kb on - strand, within mutS at 600.743 kb on + strand, within mutS at 600.803 kb on + strand at 600.803 kb on + strand, within mutS at 600.823 kb on + strand, within mutS at 600.874 kb on + strand, within mutS at 600.889 kb on - strand, within mutS at 600.937 kb on - strand, within mutS at 600.937 kb on - strand, within mutS at 600.948 kb on + strand, within mutS at 600.953 kb on + strand, within mutS at 600.953 kb on + strand, within mutS at 600.956 kb on - strand, within mutS at 600.956 kb on - strand, within mutS at 600.956 kb on - strand, within mutS at 600.961 kb on - strand, within mutS at 600.982 kb on - strand, within mutS at 600.985 kb on + strand, within mutS at 601.004 kb on + strand, within mutS at 601.005 kb on + strand, within mutS at 601.006 kb on - strand, within mutS at 601.122 kb on + strand, within mutS at 601.130 kb on - strand, within mutS at 601.130 kb on - strand, within mutS at 601.152 kb on + strand, within mutS at 601.171 kb on + strand, within mutS at 601.272 kb on + strand, within mutS at 601.272 kb on + strand, within mutS at 601.272 kb on + strand, within mutS at 601.280 kb on - strand, within mutS at 601.280 kb on - strand, within mutS at 601.295 kb on + strand at 601.298 kb on - strand, within mutS at 601.298 kb on - strand, within mutS at 601.333 kb on - strand, within mutS at 601.355 kb on - strand, within mutS at 601.426 kb on - strand, within mutS at 601.453 kb on - strand at 601.453 kb on - strand, within mutS at 601.476 kb on + strand, within mutS at 601.479 kb on - strand, within mutS at 601.515 kb on + strand, within mutS at 601.515 kb on + strand, within mutS at 601.515 kb on + strand, within mutS at 601.523 kb on - strand, within mutS at 601.533 kb on - strand, within mutS at 601.571 kb on - strand, within mutS at 601.617 kb on + strand, within mutS at 601.630 kb on + strand, within mutS at 601.638 kb on - strand, within mutS at 601.648 kb on - strand, within mutS at 601.686 kb on + strand, within mutS at 601.717 kb on + strand, within mutS at 601.779 kb on + strand, within mutS at 601.793 kb on - strand, within mutS at 601.823 kb on + strand, within mutS at 601.823 kb on + strand, within mutS at 601.831 kb on - strand, within mutS at 601.844 kb on + strand, within mutS at 601.885 kb on - strand, within mutS at 601.923 kb on + strand, within mutS at 601.931 kb on - strand, within mutS at 601.981 kb on + strand at 601.982 kb on + strand at 601.990 kb on - strand at 601.990 kb on - strand at 601.990 kb on - strand at 602.008 kb on - strand at 602.038 kb on - strand at 602.112 kb on + strand at 602.154 kb on + strand at 602.192 kb on + strand at 602.199 kb on + strand at 602.200 kb on + strand at 602.200 kb on + strand at 602.202 kb on - strand at 602.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml remove 598,844 + Synpcc7942_0610 0.48 -2.1 598,869 + Synpcc7942_0610 0.50 -0.1 598,895 - Synpcc7942_0610 0.51 -1.6 598,984 - Synpcc7942_0610 0.56 +1.6 599,003 + Synpcc7942_0610 0.57 +0.9 599,004 + Synpcc7942_0610 0.57 +1.5 599,008 + Synpcc7942_0610 0.57 +1.3 599,014 - Synpcc7942_0610 0.58 +0.7 599,014 - Synpcc7942_0610 0.58 -0.6 599,028 - Synpcc7942_0610 0.58 +0.4 599,073 - Synpcc7942_0610 0.61 +0.5 599,092 + Synpcc7942_0610 0.62 +2.0 599,097 + Synpcc7942_0610 0.62 -2.6 599,098 - Synpcc7942_0610 0.62 -0.1 599,098 - Synpcc7942_0610 0.62 +0.5 599,098 - Synpcc7942_0610 0.62 -1.1 599,112 + Synpcc7942_0610 0.63 -1.1 599,120 - Synpcc7942_0610 0.64 -0.5 599,132 - Synpcc7942_0610 0.64 -1.4 599,134 + Synpcc7942_0610 0.64 -0.1 599,141 + Synpcc7942_0610 0.65 +0.9 599,141 + Synpcc7942_0610 0.65 -0.1 599,142 - Synpcc7942_0610 0.65 -0.5 599,149 - Synpcc7942_0610 0.65 +1.4 599,149 - Synpcc7942_0610 0.65 -0.1 599,149 - Synpcc7942_0610 0.65 -1.1 599,149 - Synpcc7942_0610 0.65 +1.9 599,149 - Synpcc7942_0610 0.65 +0.7 599,149 - Synpcc7942_0610 0.65 +0.3 599,149 - Synpcc7942_0610 0.65 +1.7 599,149 - Synpcc7942_0610 0.65 +1.5 599,156 - Synpcc7942_0610 0.66 +2.2 599,202 + Synpcc7942_0610 0.68 +0.8 599,372 + Synpcc7942_0610 0.78 +1.6 599,380 - Synpcc7942_0610 0.78 -1.1 599,422 - Synpcc7942_0610 0.80 -1.6 599,481 + Synpcc7942_0610 0.84 +0.1 599,489 - Synpcc7942_0610 0.84 -1.1 599,489 - Synpcc7942_0610 0.84 +1.5 599,489 - Synpcc7942_0610 0.84 +1.7 599,503 + Synpcc7942_0610 0.85 -0.6 599,511 - Synpcc7942_0610 0.85 +0.8 599,521 - Synpcc7942_0610 0.86 +2.5 599,523 - Synpcc7942_0610 0.86 +0.7 599,528 + Synpcc7942_0610 0.86 -0.6 599,528 + Synpcc7942_0610 0.86 +1.5 599,528 + Synpcc7942_0610 0.86 -1.6 599,528 + Synpcc7942_0610 0.86 +1.2 599,536 - Synpcc7942_0610 0.87 -0.8 599,536 - Synpcc7942_0610 0.87 +0.9 599,536 - Synpcc7942_0610 0.87 +0.9 599,536 - Synpcc7942_0610 0.87 +1.7 599,543 - Synpcc7942_0610 0.87 -0.1 599,559 - Synpcc7942_0610 0.88 -0.3 599,559 - Synpcc7942_0610 0.88 -0.1 599,559 - Synpcc7942_0610 0.88 +1.1 599,593 - Synpcc7942_0610 0.90 +0.9 599,615 + +2.3 599,616 + +1.5 599,660 + -2.9 599,660 + +0.7 599,688 + -1.1 599,700 + -1.6 599,721 - +1.4 599,792 - +4.1 599,839 - -0.6 599,845 + +1.3 599,905 + -1.6 599,905 + -3.4 599,905 + -0.1 599,913 - -2.9 599,913 - -0.1 599,913 - -1.6 599,913 - -1.6 599,948 + +0.9 599,991 - -1.9 600,003 - +1.5 600,010 - -0.1 600,010 - -1.2 600,012 + -0.1 600,012 + -1.1 600,012 + -2.1 600,012 + -2.9 600,020 - -0.7 600,020 - +0.9 600,020 - -1.1 600,020 - -0.7 600,026 + +0.7 600,027 - -1.4 600,027 - -0.4 600,027 - -1.1 600,049 + -1.1 600,055 + mutS Synpcc7942_0611 0.10 -0.7 600,090 - mutS Synpcc7942_0611 0.12 -0.4 600,090 - mutS Synpcc7942_0611 0.12 -1.1 600,090 - mutS Synpcc7942_0611 0.12 -1.7 600,110 - mutS Synpcc7942_0611 0.12 -1.6 600,112 + mutS Synpcc7942_0611 0.12 -1.0 600,177 - mutS Synpcc7942_0611 0.15 -1.4 600,199 - mutS Synpcc7942_0611 0.16 +0.9 600,212 - mutS Synpcc7942_0611 0.17 -1.1 600,212 - mutS Synpcc7942_0611 0.17 -0.1 600,247 - mutS Synpcc7942_0611 0.18 -0.1 600,249 - mutS Synpcc7942_0611 0.18 -2.1 600,267 - mutS Synpcc7942_0611 0.19 -1.1 600,283 + mutS Synpcc7942_0611 0.20 -0.1 600,285 + mutS Synpcc7942_0611 0.20 -1.7 600,285 + mutS Synpcc7942_0611 0.20 -0.1 600,291 - mutS Synpcc7942_0611 0.20 -1.7 600,291 - mutS Synpcc7942_0611 0.20 -0.4 600,325 + mutS Synpcc7942_0611 0.21 -1.7 600,344 - mutS Synpcc7942_0611 0.22 -2.1 600,368 - mutS Synpcc7942_0611 0.23 -1.1 600,417 + mutS Synpcc7942_0611 0.25 -1.1 600,432 + mutS Synpcc7942_0611 0.26 -0.1 600,440 - mutS Synpcc7942_0611 0.26 -1.4 600,464 + mutS Synpcc7942_0611 0.27 -0.7 600,464 + mutS Synpcc7942_0611 0.27 -1.1 600,488 + mutS Synpcc7942_0611 0.28 -1.7 600,488 + mutS Synpcc7942_0611 0.28 -3.4 600,494 - mutS Synpcc7942_0611 0.28 -0.1 600,496 - mutS Synpcc7942_0611 0.28 -1.1 600,496 - mutS Synpcc7942_0611 0.28 +0.9 600,496 - mutS Synpcc7942_0611 0.28 -1.1 600,496 - mutS Synpcc7942_0611 0.28 -2.1 600,496 - mutS Synpcc7942_0611 0.28 -0.1 600,496 - mutS Synpcc7942_0611 0.28 -1.1 600,496 - mutS Synpcc7942_0611 0.28 +0.9 600,503 + mutS Synpcc7942_0611 0.29 -2.4 600,503 + mutS Synpcc7942_0611 0.29 -0.1 600,511 - mutS Synpcc7942_0611 0.29 +0.9 600,542 - mutS Synpcc7942_0611 0.30 +2.8 600,550 + mutS Synpcc7942_0611 0.31 -1.7 600,553 - -0.1 600,558 + mutS Synpcc7942_0611 0.31 -1.1 600,566 - -0.1 600,566 - mutS Synpcc7942_0611 0.31 +0.9 600,566 - mutS Synpcc7942_0611 0.31 -0.1 600,620 - mutS Synpcc7942_0611 0.34 -2.7 600,643 - mutS Synpcc7942_0611 0.35 -1.1 600,743 + mutS Synpcc7942_0611 0.39 -2.7 600,803 + -0.1 600,803 + mutS Synpcc7942_0611 0.41 -0.6 600,823 + mutS Synpcc7942_0611 0.42 -2.1 600,874 + mutS Synpcc7942_0611 0.44 -1.1 600,889 - mutS Synpcc7942_0611 0.45 -2.1 600,937 - mutS Synpcc7942_0611 0.47 -1.9 600,937 - mutS Synpcc7942_0611 0.47 -1.1 600,948 + mutS Synpcc7942_0611 0.47 -2.1 600,953 + mutS Synpcc7942_0611 0.48 -1.7 600,953 + mutS Synpcc7942_0611 0.48 -2.4 600,956 - mutS Synpcc7942_0611 0.48 +0.9 600,956 - mutS Synpcc7942_0611 0.48 -0.1 600,956 - mutS Synpcc7942_0611 0.48 -0.8 600,961 - mutS Synpcc7942_0611 0.48 -3.7 600,982 - mutS Synpcc7942_0611 0.49 +0.9 600,985 + mutS Synpcc7942_0611 0.49 -2.2 601,004 + mutS Synpcc7942_0611 0.50 -2.0 601,005 + mutS Synpcc7942_0611 0.50 -0.7 601,006 - mutS Synpcc7942_0611 0.50 -2.7 601,122 + mutS Synpcc7942_0611 0.55 -1.1 601,130 - mutS Synpcc7942_0611 0.55 -2.1 601,130 - mutS Synpcc7942_0611 0.55 -1.7 601,152 + mutS Synpcc7942_0611 0.56 -1.1 601,171 + mutS Synpcc7942_0611 0.57 -0.1 601,272 + mutS Synpcc7942_0611 0.61 -1.1 601,272 + mutS Synpcc7942_0611 0.61 +1.1 601,272 + mutS Synpcc7942_0611 0.61 -0.5 601,280 - mutS Synpcc7942_0611 0.61 -0.1 601,280 - mutS Synpcc7942_0611 0.61 -0.1 601,295 + -0.1 601,298 - mutS Synpcc7942_0611 0.62 -0.1 601,298 - mutS Synpcc7942_0611 0.62 -1.8 601,333 - mutS Synpcc7942_0611 0.63 -0.1 601,355 - mutS Synpcc7942_0611 0.64 -2.1 601,426 - mutS Synpcc7942_0611 0.67 -2.4 601,453 - -1.1 601,453 - mutS Synpcc7942_0611 0.69 -0.5 601,476 + mutS Synpcc7942_0611 0.69 -1.1 601,479 - mutS Synpcc7942_0611 0.70 -1.1 601,515 + mutS Synpcc7942_0611 0.71 -0.3 601,515 + mutS Synpcc7942_0611 0.71 -0.1 601,515 + mutS Synpcc7942_0611 0.71 +0.3 601,523 - mutS Synpcc7942_0611 0.71 -0.8 601,533 - mutS Synpcc7942_0611 0.72 -5.0 601,571 - mutS Synpcc7942_0611 0.73 -1.2 601,617 + mutS Synpcc7942_0611 0.75 -1.4 601,630 + mutS Synpcc7942_0611 0.76 -1.5 601,638 - mutS Synpcc7942_0611 0.76 -1.2 601,648 - mutS Synpcc7942_0611 0.77 -0.1 601,686 + mutS Synpcc7942_0611 0.78 -0.1 601,717 + mutS Synpcc7942_0611 0.80 -2.4 601,779 + mutS Synpcc7942_0611 0.82 -0.1 601,793 - mutS Synpcc7942_0611 0.83 -1.7 601,823 + mutS Synpcc7942_0611 0.84 -1.1 601,823 + mutS Synpcc7942_0611 0.84 -1.4 601,831 - mutS Synpcc7942_0611 0.84 -0.1 601,844 + mutS Synpcc7942_0611 0.85 -2.1 601,885 - mutS Synpcc7942_0611 0.87 -1.4 601,923 + mutS Synpcc7942_0611 0.88 -1.7 601,931 - mutS Synpcc7942_0611 0.88 -1.7 601,981 + -2.4 601,982 + -1.1 601,990 - -0.7 601,990 - -2.1 601,990 - -0.7 602,008 - -0.1 602,038 - -2.9 602,112 + -1.7 602,154 + -0.1 602,192 + +0.9 602,199 + -1.4 602,200 + +2.3 602,200 + -0.8 602,202 - -2.4 602,208 - -1.7
Or see this region's nucleotide sequence