Experiment: Chloramphenicol 0.0006640625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0553 and ychF are separated by 59 nucleotides ychF and Synpcc7942_0555 are separated by 104 nucleotides Synpcc7942_0555 and srrB overlap by 4 nucleotides
Synpcc7942_0553: Synpcc7942_0553 - Secretion protein HlyD, at 535,182 to 536,534
_0553
Synpcc7942_0554: ychF - translation-associated GTPase, at 536,594 to 537,685
ychF
Synpcc7942_0555: Synpcc7942_0555 - zinc metalloprotease, at 537,790 to 538,509
_0555
Synpcc7942_0556: srrB - two component transcriptional regulator, winged helix family, at 538,506 to 539,219
srrB
Position (kb) 536
537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 535.629 kb on - strand, within Synpcc7942_0553 at 535.640 kb on + strand, within Synpcc7942_0553 at 535.648 kb on + strand, within Synpcc7942_0553 at 535.678 kb on - strand, within Synpcc7942_0553 at 535.678 kb on - strand, within Synpcc7942_0553 at 535.705 kb on - strand, within Synpcc7942_0553 at 535.730 kb on + strand, within Synpcc7942_0553 at 535.735 kb on + strand, within Synpcc7942_0553 at 535.743 kb on - strand, within Synpcc7942_0553 at 535.753 kb on - strand, within Synpcc7942_0553 at 535.758 kb on + strand, within Synpcc7942_0553 at 535.758 kb on + strand, within Synpcc7942_0553 at 535.766 kb on - strand, within Synpcc7942_0553 at 535.766 kb on - strand, within Synpcc7942_0553 at 535.812 kb on - strand, within Synpcc7942_0553 at 535.812 kb on - strand, within Synpcc7942_0553 at 535.816 kb on - strand, within Synpcc7942_0553 at 535.836 kb on + strand, within Synpcc7942_0553 at 535.837 kb on + strand, within Synpcc7942_0553 at 535.855 kb on + strand, within Synpcc7942_0553 at 535.929 kb on - strand, within Synpcc7942_0553 at 535.968 kb on + strand, within Synpcc7942_0553 at 535.968 kb on + strand, within Synpcc7942_0553 at 535.974 kb on + strand, within Synpcc7942_0553 at 535.976 kb on - strand, within Synpcc7942_0553 at 536.009 kb on - strand, within Synpcc7942_0553 at 536.070 kb on + strand, within Synpcc7942_0553 at 536.097 kb on + strand, within Synpcc7942_0553 at 536.097 kb on + strand, within Synpcc7942_0553 at 536.105 kb on - strand, within Synpcc7942_0553 at 536.119 kb on - strand, within Synpcc7942_0553 at 536.119 kb on - strand, within Synpcc7942_0553 at 536.135 kb on + strand, within Synpcc7942_0553 at 536.135 kb on + strand, within Synpcc7942_0553 at 536.144 kb on - strand, within Synpcc7942_0553 at 536.144 kb on - strand, within Synpcc7942_0553 at 536.144 kb on - strand, within Synpcc7942_0553 at 536.145 kb on - strand, within Synpcc7942_0553 at 536.156 kb on - strand, within Synpcc7942_0553 at 536.175 kb on + strand, within Synpcc7942_0553 at 536.189 kb on - strand, within Synpcc7942_0553 at 536.198 kb on + strand, within Synpcc7942_0553 at 536.206 kb on - strand, within Synpcc7942_0553 at 536.226 kb on - strand, within Synpcc7942_0553 at 536.229 kb on + strand, within Synpcc7942_0553 at 536.262 kb on + strand, within Synpcc7942_0553 at 536.270 kb on - strand, within Synpcc7942_0553 at 536.270 kb on - strand, within Synpcc7942_0553 at 536.294 kb on - strand, within Synpcc7942_0553 at 536.318 kb on - strand, within Synpcc7942_0553 at 536.320 kb on + strand, within Synpcc7942_0553 at 536.328 kb on - strand, within Synpcc7942_0553 at 536.374 kb on + strand, within Synpcc7942_0553 at 536.377 kb on - strand, within Synpcc7942_0553 at 536.377 kb on - strand, within Synpcc7942_0553 at 536.380 kb on - strand, within Synpcc7942_0553 at 536.382 kb on - strand, within Synpcc7942_0553 at 536.382 kb on - strand, within Synpcc7942_0553 at 536.399 kb on - strand at 536.416 kb on + strand at 536.429 kb on + strand at 536.447 kb on - strand at 536.495 kb on + strand at 536.557 kb on + strand at 536.580 kb on + strand at 536.580 kb on + strand at 536.591 kb on - strand at 536.596 kb on + strand at 536.596 kb on + strand at 536.607 kb on + strand at 536.617 kb on - strand at 536.620 kb on + strand at 536.623 kb on - strand at 536.629 kb on + strand at 536.634 kb on + strand at 536.680 kb on - strand at 536.695 kb on + strand at 536.710 kb on - strand at 536.764 kb on + strand, within ychF at 536.774 kb on + strand, within ychF at 536.781 kb on + strand, within ychF at 536.782 kb on - strand, within ychF at 536.783 kb on + strand, within ychF at 536.783 kb on + strand, within ychF at 536.816 kb on + strand, within ychF at 536.818 kb on - strand, within ychF at 536.821 kb on + strand, within ychF at 536.840 kb on + strand, within ychF at 536.841 kb on + strand, within ychF at 536.843 kb on - strand, within ychF at 536.846 kb on + strand, within ychF at 536.859 kb on - strand, within ychF at 536.900 kb on + strand, within ychF at 536.910 kb on + strand, within ychF at 536.924 kb on + strand, within ychF at 536.999 kb on + strand, within ychF at 537.047 kb on - strand, within ychF at 537.080 kb on + strand, within ychF at 537.109 kb on - strand, within ychF at 537.118 kb on - strand, within ychF at 537.167 kb on + strand, within ychF at 537.175 kb on - strand, within ychF at 537.175 kb on - strand, within ychF at 537.191 kb on + strand, within ychF at 537.196 kb on + strand, within ychF at 537.196 kb on + strand, within ychF at 537.196 kb on + strand, within ychF at 537.241 kb on + strand at 537.265 kb on - strand, within ychF at 537.293 kb on + strand, within ychF at 537.295 kb on + strand, within ychF at 537.297 kb on - strand, within ychF at 537.297 kb on - strand, within ychF at 537.299 kb on - strand, within ychF at 537.334 kb on + strand, within ychF at 537.334 kb on + strand, within ychF at 537.387 kb on - strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.411 kb on + strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.419 kb on - strand, within ychF at 537.451 kb on + strand, within ychF at 537.466 kb on + strand, within ychF at 537.474 kb on - strand, within ychF at 537.492 kb on + strand, within ychF at 537.494 kb on + strand, within ychF at 537.494 kb on + strand, within ychF at 537.502 kb on + strand at 537.510 kb on + strand, within ychF at 537.517 kb on - strand, within ychF at 537.537 kb on + strand, within ychF at 537.544 kb on - strand, within ychF at 537.574 kb on + strand, within ychF at 537.574 kb on + strand, within ychF at 537.579 kb on + strand at 537.586 kb on + strand at 537.594 kb on - strand at 537.634 kb on + strand at 537.642 kb on - strand at 537.701 kb on - strand at 537.711 kb on + strand at 537.726 kb on + strand at 537.741 kb on + strand at 537.741 kb on + strand at 537.751 kb on + strand at 537.831 kb on - strand at 537.847 kb on + strand at 537.847 kb on + strand at 537.868 kb on - strand, within Synpcc7942_0555 at 537.870 kb on + strand, within Synpcc7942_0555 at 537.870 kb on + strand, within Synpcc7942_0555 at 537.878 kb on - strand at 537.924 kb on + strand, within Synpcc7942_0555 at 537.932 kb on - strand, within Synpcc7942_0555 at 537.932 kb on - strand, within Synpcc7942_0555 at 537.948 kb on - strand, within Synpcc7942_0555 at 538.080 kb on + strand, within Synpcc7942_0555 at 538.081 kb on + strand, within Synpcc7942_0555 at 538.082 kb on - strand, within Synpcc7942_0555 at 538.088 kb on + strand, within Synpcc7942_0555 at 538.088 kb on - strand, within Synpcc7942_0555 at 538.099 kb on + strand, within Synpcc7942_0555 at 538.102 kb on + strand, within Synpcc7942_0555 at 538.105 kb on + strand, within Synpcc7942_0555 at 538.113 kb on - strand, within Synpcc7942_0555 at 538.120 kb on + strand, within Synpcc7942_0555 at 538.163 kb on + strand, within Synpcc7942_0555 at 538.186 kb on - strand, within Synpcc7942_0555 at 538.186 kb on - strand, within Synpcc7942_0555 at 538.188 kb on + strand, within Synpcc7942_0555 at 538.196 kb on - strand, within Synpcc7942_0555 at 538.198 kb on - strand, within Synpcc7942_0555 at 538.256 kb on - strand, within Synpcc7942_0555 at 538.256 kb on - strand, within Synpcc7942_0555 at 538.257 kb on - strand, within Synpcc7942_0555 at 538.337 kb on + strand, within Synpcc7942_0555 at 538.337 kb on + strand, within Synpcc7942_0555 at 538.345 kb on - strand, within Synpcc7942_0555 at 538.345 kb on - strand, within Synpcc7942_0555 at 538.366 kb on + strand, within Synpcc7942_0555 at 538.431 kb on - strand, within Synpcc7942_0555 at 538.504 kb on + strand at 538.504 kb on + strand at 538.576 kb on + strand at 538.597 kb on + strand, within srrB at 538.605 kb on - strand at 538.634 kb on - strand, within srrB at 538.667 kb on + strand, within srrB
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml remove 535,629 - Synpcc7942_0553 0.33 -0.0 535,640 + Synpcc7942_0553 0.34 -0.0 535,648 + Synpcc7942_0553 0.34 +2.8 535,678 - Synpcc7942_0553 0.37 +1.3 535,678 - Synpcc7942_0553 0.37 -0.0 535,705 - Synpcc7942_0553 0.39 +1.1 535,730 + Synpcc7942_0553 0.41 +1.0 535,735 + Synpcc7942_0553 0.41 -1.0 535,743 - Synpcc7942_0553 0.41 +1.5 535,753 - Synpcc7942_0553 0.42 -1.6 535,758 + Synpcc7942_0553 0.43 -0.0 535,758 + Synpcc7942_0553 0.43 -0.3 535,766 - Synpcc7942_0553 0.43 -1.0 535,766 - Synpcc7942_0553 0.43 +2.3 535,812 - Synpcc7942_0553 0.47 -0.0 535,812 - Synpcc7942_0553 0.47 -0.0 535,816 - Synpcc7942_0553 0.47 -0.6 535,836 + Synpcc7942_0553 0.48 +2.1 535,837 + Synpcc7942_0553 0.48 -2.6 535,855 + Synpcc7942_0553 0.50 -1.0 535,929 - Synpcc7942_0553 0.55 +0.8 535,968 + Synpcc7942_0553 0.58 -1.0 535,968 + Synpcc7942_0553 0.58 -2.6 535,974 + Synpcc7942_0553 0.59 +1.2 535,976 - Synpcc7942_0553 0.59 -0.0 536,009 - Synpcc7942_0553 0.61 +0.2 536,070 + Synpcc7942_0553 0.66 -0.0 536,097 + Synpcc7942_0553 0.68 +1.0 536,097 + Synpcc7942_0553 0.68 -0.0 536,105 - Synpcc7942_0553 0.68 +0.3 536,119 - Synpcc7942_0553 0.69 -1.0 536,119 - Synpcc7942_0553 0.69 -1.6 536,135 + Synpcc7942_0553 0.70 -0.0 536,135 + Synpcc7942_0553 0.70 -0.6 536,144 - Synpcc7942_0553 0.71 -1.0 536,144 - Synpcc7942_0553 0.71 -0.0 536,144 - Synpcc7942_0553 0.71 -2.6 536,145 - Synpcc7942_0553 0.71 -2.0 536,156 - Synpcc7942_0553 0.72 -0.0 536,175 + Synpcc7942_0553 0.73 +1.0 536,189 - Synpcc7942_0553 0.74 +2.7 536,198 + Synpcc7942_0553 0.75 +0.6 536,206 - Synpcc7942_0553 0.76 -0.0 536,226 - Synpcc7942_0553 0.77 +0.7 536,229 + Synpcc7942_0553 0.77 -0.0 536,262 + Synpcc7942_0553 0.80 +2.2 536,270 - Synpcc7942_0553 0.80 +0.4 536,270 - Synpcc7942_0553 0.80 -1.1 536,294 - Synpcc7942_0553 0.82 -0.0 536,318 - Synpcc7942_0553 0.84 +1.0 536,320 + Synpcc7942_0553 0.84 -0.3 536,328 - Synpcc7942_0553 0.85 -0.6 536,374 + Synpcc7942_0553 0.88 -0.0 536,377 - Synpcc7942_0553 0.88 +0.9 536,377 - Synpcc7942_0553 0.88 -0.4 536,380 - Synpcc7942_0553 0.89 -0.0 536,382 - Synpcc7942_0553 0.89 -0.0 536,382 - Synpcc7942_0553 0.89 +0.2 536,399 - -1.6 536,416 + +1.3 536,429 + -0.0 536,447 - +2.0 536,495 + -0.5 536,557 + +1.5 536,580 + -0.7 536,580 + -0.0 536,591 - +1.5 536,596 + -1.0 536,596 + -1.0 536,607 + -1.6 536,617 - -1.0 536,620 + -0.9 536,623 - -1.0 536,629 + -0.0 536,634 + -1.6 536,680 - -1.0 536,695 + -1.6 536,710 - -0.0 536,764 + ychF Synpcc7942_0554 0.16 -0.8 536,774 + ychF Synpcc7942_0554 0.16 -1.4 536,781 + ychF Synpcc7942_0554 0.17 -1.5 536,782 - ychF Synpcc7942_0554 0.17 -0.0 536,783 + ychF Synpcc7942_0554 0.17 -0.6 536,783 + ychF Synpcc7942_0554 0.17 -0.0 536,816 + ychF Synpcc7942_0554 0.20 -1.0 536,818 - ychF Synpcc7942_0554 0.21 -0.0 536,821 + ychF Synpcc7942_0554 0.21 +0.5 536,840 + ychF Synpcc7942_0554 0.23 -1.3 536,841 + ychF Synpcc7942_0554 0.23 -0.0 536,843 - ychF Synpcc7942_0554 0.23 -2.8 536,846 + ychF Synpcc7942_0554 0.23 -1.0 536,859 - ychF Synpcc7942_0554 0.24 -2.4 536,900 + ychF Synpcc7942_0554 0.28 -0.0 536,910 + ychF Synpcc7942_0554 0.29 -0.8 536,924 + ychF Synpcc7942_0554 0.30 +0.5 536,999 + ychF Synpcc7942_0554 0.37 -0.2 537,047 - ychF Synpcc7942_0554 0.41 -2.0 537,080 + ychF Synpcc7942_0554 0.45 -0.5 537,109 - ychF Synpcc7942_0554 0.47 +1.0 537,118 - ychF Synpcc7942_0554 0.48 -0.0 537,167 + ychF Synpcc7942_0554 0.52 -0.0 537,175 - ychF Synpcc7942_0554 0.53 -1.6 537,175 - ychF Synpcc7942_0554 0.53 -1.4 537,191 + ychF Synpcc7942_0554 0.55 +1.0 537,196 + ychF Synpcc7942_0554 0.55 -1.0 537,196 + ychF Synpcc7942_0554 0.55 +0.2 537,196 + ychF Synpcc7942_0554 0.55 -3.7 537,241 + -1.6 537,265 - ychF Synpcc7942_0554 0.61 -0.0 537,293 + ychF Synpcc7942_0554 0.64 -1.7 537,295 + ychF Synpcc7942_0554 0.64 -0.0 537,297 - ychF Synpcc7942_0554 0.64 -1.0 537,297 - ychF Synpcc7942_0554 0.64 -0.0 537,299 - ychF Synpcc7942_0554 0.65 -0.6 537,334 + ychF Synpcc7942_0554 0.68 -1.7 537,334 + ychF Synpcc7942_0554 0.68 +1.0 537,387 - ychF Synpcc7942_0554 0.73 -2.6 537,411 + ychF Synpcc7942_0554 0.75 -0.0 537,411 + ychF Synpcc7942_0554 0.75 -1.7 537,411 + ychF Synpcc7942_0554 0.75 -1.4 537,411 + ychF Synpcc7942_0554 0.75 -0.0 537,411 + ychF Synpcc7942_0554 0.75 -2.4 537,411 + ychF Synpcc7942_0554 0.75 -0.0 537,411 + ychF Synpcc7942_0554 0.75 -2.6 537,411 + ychF Synpcc7942_0554 0.75 -2.4 537,419 - ychF Synpcc7942_0554 0.76 -1.0 537,419 - ychF Synpcc7942_0554 0.76 +0.5 537,419 - ychF Synpcc7942_0554 0.76 -1.0 537,419 - ychF Synpcc7942_0554 0.76 -1.0 537,419 - ychF Synpcc7942_0554 0.76 -0.0 537,419 - ychF Synpcc7942_0554 0.76 -1.0 537,419 - ychF Synpcc7942_0554 0.76 +0.4 537,419 - ychF Synpcc7942_0554 0.76 -1.6 537,451 + ychF Synpcc7942_0554 0.78 -0.8 537,466 + ychF Synpcc7942_0554 0.80 +1.8 537,474 - ychF Synpcc7942_0554 0.81 -0.8 537,492 + ychF Synpcc7942_0554 0.82 -0.0 537,494 + ychF Synpcc7942_0554 0.82 -1.0 537,494 + ychF Synpcc7942_0554 0.82 -1.0 537,502 + -0.0 537,510 + ychF Synpcc7942_0554 0.84 -0.7 537,517 - ychF Synpcc7942_0554 0.85 -0.0 537,537 + ychF Synpcc7942_0554 0.86 -1.6 537,544 - ychF Synpcc7942_0554 0.87 -1.6 537,574 + ychF Synpcc7942_0554 0.90 -0.0 537,574 + ychF Synpcc7942_0554 0.90 -0.6 537,579 + -1.0 537,586 + -1.0 537,594 - -0.0 537,634 + +0.8 537,642 - -1.0 537,701 - +1.4 537,711 + -0.0 537,726 + +0.5 537,741 + -0.8 537,741 + +1.5 537,751 + -1.6 537,831 - +1.8 537,847 + -0.0 537,847 + -2.4 537,868 - Synpcc7942_0555 0.11 +0.5 537,870 + Synpcc7942_0555 0.11 +0.4 537,870 + Synpcc7942_0555 0.11 +1.7 537,878 - +1.0 537,924 + Synpcc7942_0555 0.19 -0.0 537,932 - Synpcc7942_0555 0.20 +0.6 537,932 - Synpcc7942_0555 0.20 +1.0 537,948 - Synpcc7942_0555 0.22 -0.6 538,080 + Synpcc7942_0555 0.40 -0.8 538,081 + Synpcc7942_0555 0.40 -1.0 538,082 - Synpcc7942_0555 0.41 +0.4 538,088 + Synpcc7942_0555 0.41 +0.8 538,088 - Synpcc7942_0555 0.41 +1.5 538,099 + Synpcc7942_0555 0.43 -2.0 538,102 + Synpcc7942_0555 0.43 -0.6 538,105 + Synpcc7942_0555 0.44 +0.2 538,113 - Synpcc7942_0555 0.45 +1.2 538,120 + Synpcc7942_0555 0.46 -1.6 538,163 + Synpcc7942_0555 0.52 -0.0 538,186 - Synpcc7942_0555 0.55 -0.0 538,186 - Synpcc7942_0555 0.55 +1.0 538,188 + Synpcc7942_0555 0.55 -0.0 538,196 - Synpcc7942_0555 0.56 +1.7 538,198 - Synpcc7942_0555 0.57 -0.0 538,256 - Synpcc7942_0555 0.65 +0.2 538,256 - Synpcc7942_0555 0.65 -1.0 538,257 - Synpcc7942_0555 0.65 +0.5 538,337 + Synpcc7942_0555 0.76 +0.2 538,337 + Synpcc7942_0555 0.76 -0.6 538,345 - Synpcc7942_0555 0.77 +2.0 538,345 - Synpcc7942_0555 0.77 +0.5 538,366 + Synpcc7942_0555 0.80 +1.5 538,431 - Synpcc7942_0555 0.89 -0.0 538,504 + +1.0 538,504 + -0.0 538,576 + -2.6 538,597 + srrB Synpcc7942_0556 0.13 -0.0 538,605 - +1.0 538,634 - srrB Synpcc7942_0556 0.18 -0.0 538,667 + srrB Synpcc7942_0556 0.23 -1.0
Or see this region's nucleotide sequence