Experiment: Chloramphenicol 0.0006640625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bioB and Synpcc7942_0420 are separated by 47 nucleotides Synpcc7942_0420 and Synpcc7942_0421 are separated by 31 nucleotides Synpcc7942_0421 and Synpcc7942_0422 are separated by 200 nucleotides
Synpcc7942_0419: bioB - biotin synthase, at 408,941 to 409,903
bioB
Synpcc7942_0420: Synpcc7942_0420 - hypothetical protein, at 409,951 to 411,516
_0420
Synpcc7942_0421: Synpcc7942_0421 - hypothetical protein, at 411,548 to 411,946
_0421
Synpcc7942_0422: Synpcc7942_0422 - hypothetical protein, at 412,147 to 413,289
_0422
Position (kb) 409
410
411
412 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 408.953 kb on - strand at 409.897 kb on + strand at 409.948 kb on + strand at 409.956 kb on - strand at 410.051 kb on - strand at 410.081 kb on + strand at 410.089 kb on - strand at 410.089 kb on - strand at 410.100 kb on + strand at 410.171 kb on + strand, within Synpcc7942_0420 at 410.257 kb on + strand, within Synpcc7942_0420 at 410.267 kb on + strand, within Synpcc7942_0420 at 410.275 kb on - strand, within Synpcc7942_0420 at 410.281 kb on + strand, within Synpcc7942_0420 at 410.314 kb on - strand, within Synpcc7942_0420 at 410.337 kb on - strand, within Synpcc7942_0420 at 410.337 kb on - strand, within Synpcc7942_0420 at 410.428 kb on + strand, within Synpcc7942_0420 at 410.446 kb on + strand, within Synpcc7942_0420 at 410.452 kb on + strand, within Synpcc7942_0420 at 410.575 kb on + strand, within Synpcc7942_0420 at 410.605 kb on + strand, within Synpcc7942_0420 at 410.605 kb on + strand, within Synpcc7942_0420 at 410.613 kb on - strand, within Synpcc7942_0420 at 410.761 kb on + strand, within Synpcc7942_0420 at 410.761 kb on + strand, within Synpcc7942_0420 at 410.766 kb on + strand, within Synpcc7942_0420 at 410.766 kb on + strand, within Synpcc7942_0420 at 410.774 kb on - strand, within Synpcc7942_0420 at 410.822 kb on - strand, within Synpcc7942_0420 at 410.860 kb on + strand, within Synpcc7942_0420 at 410.860 kb on + strand, within Synpcc7942_0420 at 410.860 kb on + strand, within Synpcc7942_0420 at 410.867 kb on + strand, within Synpcc7942_0420 at 410.867 kb on + strand, within Synpcc7942_0420 at 410.868 kb on - strand, within Synpcc7942_0420 at 410.872 kb on + strand, within Synpcc7942_0420 at 410.872 kb on + strand, within Synpcc7942_0420 at 410.875 kb on - strand, within Synpcc7942_0420 at 410.918 kb on + strand, within Synpcc7942_0420 at 410.929 kb on - strand, within Synpcc7942_0420 at 410.953 kb on - strand, within Synpcc7942_0420 at 411.033 kb on - strand, within Synpcc7942_0420 at 411.063 kb on + strand, within Synpcc7942_0420 at 411.071 kb on - strand, within Synpcc7942_0420 at 411.114 kb on - strand, within Synpcc7942_0420 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.243 kb on + strand, within Synpcc7942_0420 at 411.251 kb on - strand, within Synpcc7942_0420 at 411.251 kb on - strand, within Synpcc7942_0420 at 411.272 kb on + strand, within Synpcc7942_0420 at 411.297 kb on - strand, within Synpcc7942_0420 at 411.332 kb on + strand, within Synpcc7942_0420 at 411.334 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.350 kb on + strand, within Synpcc7942_0420 at 411.363 kb on - strand at 411.381 kb on + strand at 411.381 kb on + strand at 411.390 kb on + strand at 411.398 kb on - strand at 411.398 kb on - strand at 411.433 kb on + strand at 411.566 kb on - strand at 411.607 kb on + strand, within Synpcc7942_0421 at 411.614 kb on + strand, within Synpcc7942_0421 at 411.622 kb on - strand, within Synpcc7942_0421 at 411.622 kb on - strand, within Synpcc7942_0421 at 411.676 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.682 kb on - strand, within Synpcc7942_0421 at 411.715 kb on - strand, within Synpcc7942_0421 at 411.742 kb on - strand, within Synpcc7942_0421 at 411.742 kb on - strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.804 kb on + strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.812 kb on - strand, within Synpcc7942_0421 at 411.819 kb on + strand, within Synpcc7942_0421 at 411.831 kb on + strand, within Synpcc7942_0421 at 411.831 kb on + strand, within Synpcc7942_0421 at 411.839 kb on - strand, within Synpcc7942_0421 at 411.839 kb on - strand, within Synpcc7942_0421 at 411.846 kb on - strand, within Synpcc7942_0421 at 411.902 kb on - strand, within Synpcc7942_0421 at 411.905 kb on + strand, within Synpcc7942_0421 at 411.946 kb on + strand at 411.953 kb on + strand at 411.953 kb on + strand at 411.982 kb on - strand at 411.990 kb on + strand at 411.998 kb on - strand at 411.998 kb on - strand at 412.009 kb on + strand at 412.009 kb on + strand at 412.015 kb on + strand at 412.023 kb on - strand at 412.046 kb on + strand at 412.052 kb on + strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.065 kb on - strand at 412.091 kb on + strand at 412.099 kb on - strand at 412.123 kb on + strand at 412.133 kb on + strand at 412.133 kb on + strand at 412.166 kb on - strand at 412.185 kb on + strand at 412.188 kb on - strand at 412.193 kb on - strand at 412.193 kb on - strand at 412.193 kb on - strand at 412.196 kb on - strand at 412.207 kb on + strand at 412.207 kb on + strand at 412.207 kb on + strand at 412.215 kb on + strand at 412.215 kb on + strand at 412.215 kb on + strand at 412.223 kb on - strand at 412.239 kb on + strand at 412.239 kb on + strand at 412.247 kb on - strand at 412.294 kb on - strand, within Synpcc7942_0422 at 412.313 kb on - strand, within Synpcc7942_0422 at 412.422 kb on + strand, within Synpcc7942_0422 at 412.489 kb on + strand, within Synpcc7942_0422 at 412.499 kb on + strand, within Synpcc7942_0422 at 412.499 kb on + strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.507 kb on - strand, within Synpcc7942_0422 at 412.514 kb on + strand, within Synpcc7942_0422
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml remove 408,953 - +1.3 409,897 + +1.0 409,948 + +1.0 409,956 - -0.3 410,051 - -2.0 410,081 + +0.4 410,089 - -0.8 410,089 - -1.6 410,100 + -0.5 410,171 + Synpcc7942_0420 0.14 -1.6 410,257 + Synpcc7942_0420 0.20 -0.8 410,267 + Synpcc7942_0420 0.20 -0.0 410,275 - Synpcc7942_0420 0.21 -0.0 410,281 + Synpcc7942_0420 0.21 +1.0 410,314 - Synpcc7942_0420 0.23 -1.6 410,337 - Synpcc7942_0420 0.25 -1.0 410,337 - Synpcc7942_0420 0.25 -1.0 410,428 + Synpcc7942_0420 0.30 -0.0 410,446 + Synpcc7942_0420 0.32 -1.0 410,452 + Synpcc7942_0420 0.32 -0.6 410,575 + Synpcc7942_0420 0.40 -0.0 410,605 + Synpcc7942_0420 0.42 -1.0 410,605 + Synpcc7942_0420 0.42 -2.0 410,613 - Synpcc7942_0420 0.42 -0.0 410,761 + Synpcc7942_0420 0.52 -1.2 410,761 + Synpcc7942_0420 0.52 -1.6 410,766 + Synpcc7942_0420 0.52 -1.6 410,766 + Synpcc7942_0420 0.52 -0.5 410,774 - Synpcc7942_0420 0.53 -1.8 410,822 - Synpcc7942_0420 0.56 -1.5 410,860 + Synpcc7942_0420 0.58 -0.0 410,860 + Synpcc7942_0420 0.58 -0.0 410,860 + Synpcc7942_0420 0.58 -0.0 410,867 + Synpcc7942_0420 0.58 -1.6 410,867 + Synpcc7942_0420 0.58 -2.4 410,868 - Synpcc7942_0420 0.59 -1.0 410,872 + Synpcc7942_0420 0.59 -0.5 410,872 + Synpcc7942_0420 0.59 +2.0 410,875 - Synpcc7942_0420 0.59 +2.0 410,918 + Synpcc7942_0420 0.62 +0.5 410,929 - Synpcc7942_0420 0.62 -0.0 410,953 - Synpcc7942_0420 0.64 -1.0 411,033 - Synpcc7942_0420 0.69 -1.6 411,063 + Synpcc7942_0420 0.71 -1.0 411,071 - Synpcc7942_0420 0.72 -1.0 411,114 - Synpcc7942_0420 0.74 -1.0 411,243 + Synpcc7942_0420 0.83 +1.0 411,243 + Synpcc7942_0420 0.83 -1.0 411,243 + Synpcc7942_0420 0.83 -0.0 411,251 - Synpcc7942_0420 0.83 -1.6 411,251 - Synpcc7942_0420 0.83 -0.0 411,272 + Synpcc7942_0420 0.84 -0.5 411,297 - Synpcc7942_0420 0.86 -1.6 411,332 + Synpcc7942_0420 0.88 -0.0 411,334 + Synpcc7942_0420 0.88 -1.0 411,350 + Synpcc7942_0420 0.89 +0.5 411,350 + Synpcc7942_0420 0.89 -2.0 411,350 + Synpcc7942_0420 0.89 -0.0 411,363 - -1.6 411,381 + -0.5 411,381 + -2.6 411,390 + -0.0 411,398 - -0.0 411,398 - -1.0 411,433 + -0.0 411,566 - +0.3 411,607 + Synpcc7942_0421 0.15 +1.0 411,614 + Synpcc7942_0421 0.17 +1.0 411,622 - Synpcc7942_0421 0.19 -0.0 411,622 - Synpcc7942_0421 0.19 -1.0 411,676 - Synpcc7942_0421 0.32 -0.6 411,682 - Synpcc7942_0421 0.34 -2.4 411,682 - Synpcc7942_0421 0.34 +0.5 411,682 - Synpcc7942_0421 0.34 -0.0 411,682 - Synpcc7942_0421 0.34 -2.0 411,715 - Synpcc7942_0421 0.42 -0.6 411,742 - Synpcc7942_0421 0.49 -1.6 411,742 - Synpcc7942_0421 0.49 -1.6 411,804 + Synpcc7942_0421 0.64 -0.0 411,804 + Synpcc7942_0421 0.64 -0.0 411,804 + Synpcc7942_0421 0.64 -1.6 411,812 - Synpcc7942_0421 0.66 -0.0 411,812 - Synpcc7942_0421 0.66 -1.0 411,812 - Synpcc7942_0421 0.66 +0.1 411,819 + Synpcc7942_0421 0.68 -0.0 411,831 + Synpcc7942_0421 0.71 -0.8 411,831 + Synpcc7942_0421 0.71 -0.6 411,839 - Synpcc7942_0421 0.73 -0.0 411,839 - Synpcc7942_0421 0.73 -1.0 411,846 - Synpcc7942_0421 0.75 -0.0 411,902 - Synpcc7942_0421 0.89 +1.0 411,905 + Synpcc7942_0421 0.89 -2.0 411,946 + +2.3 411,953 + +1.5 411,953 + +0.1 411,982 - -1.6 411,990 + -0.0 411,998 - +0.5 411,998 - +0.5 412,009 + -0.0 412,009 + +1.5 412,015 + -0.2 412,023 - -1.6 412,046 + -0.0 412,052 + -0.0 412,065 - +0.5 412,065 - -0.3 412,065 - +2.8 412,065 - +0.8 412,065 - -0.0 412,091 + +0.5 412,099 - -0.0 412,123 + -0.0 412,133 + +0.1 412,133 + +0.7 412,166 - -1.4 412,185 + -0.8 412,188 - -1.0 412,193 - -1.0 412,193 - -0.3 412,193 - -0.6 412,196 - +0.8 412,207 + +1.1 412,207 + +0.1 412,207 + -0.4 412,215 + +2.0 412,215 + +0.4 412,215 + +3.0 412,223 - +0.5 412,239 + -1.4 412,239 + -1.6 412,247 - +1.1 412,294 - Synpcc7942_0422 0.13 +1.0 412,313 - Synpcc7942_0422 0.15 +0.5 412,422 + Synpcc7942_0422 0.24 -0.0 412,489 + Synpcc7942_0422 0.30 -0.0 412,499 + Synpcc7942_0422 0.31 -0.6 412,499 + Synpcc7942_0422 0.31 +0.2 412,507 - Synpcc7942_0422 0.31 +0.5 412,507 - Synpcc7942_0422 0.31 +0.6 412,507 - Synpcc7942_0422 0.31 -1.0 412,514 + Synpcc7942_0422 0.32 -1.0
Or see this region's nucleotide sequence