Experiment: Chloramphenicol 0.0006640625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bgl and rbfA overlap by 4 nucleotides rbfA and ycf33 are separated by 51 nucleotides ycf33 and ictB are separated by 728 nucleotides
Synpcc7942_0354: bgl - Beta-glucosidase-related glycosidase-like, at 346,832 to 348,460
bgl
Synpcc7942_0355: rbfA - ribosome-binding factor A, at 348,457 to 348,870
rbfA
Synpcc7942_0356: ycf33 - conserved hypothetical protein YCF33, at 348,922 to 349,146
ycf33
Synpcc7942_0357: ictB - Inorganic carbon transporter, at 349,875 to 351,278
ictB
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 347.927 kb on - strand, within bgl at 347.985 kb on - strand, within bgl at 348.018 kb on + strand, within bgl at 348.035 kb on + strand, within bgl at 348.035 kb on + strand, within bgl at 348.090 kb on + strand, within bgl at 348.099 kb on - strand, within bgl at 348.102 kb on - strand, within bgl at 348.112 kb on - strand, within bgl at 348.120 kb on - strand, within bgl at 348.123 kb on + strand, within bgl at 348.131 kb on - strand, within bgl at 348.141 kb on - strand, within bgl at 348.149 kb on + strand, within bgl at 348.157 kb on - strand, within bgl at 348.165 kb on + strand, within bgl at 348.178 kb on - strand, within bgl at 348.178 kb on - strand at 348.183 kb on - strand, within bgl at 348.201 kb on + strand at 348.245 kb on + strand, within bgl at 348.273 kb on - strand, within bgl at 348.344 kb on - strand at 348.344 kb on - strand at 348.349 kb on - strand at 348.381 kb on + strand at 348.393 kb on + strand at 348.403 kb on + strand at 348.415 kb on + strand at 348.415 kb on + strand at 348.422 kb on + strand at 348.423 kb on - strand at 348.423 kb on - strand at 348.423 kb on - strand at 348.427 kb on + strand at 348.435 kb on - strand at 348.468 kb on - strand at 348.473 kb on - strand at 348.475 kb on + strand at 348.475 kb on + strand at 348.475 kb on + strand at 348.489 kb on + strand at 348.496 kb on - strand at 348.573 kb on - strand, within rbfA at 348.625 kb on + strand, within rbfA at 348.633 kb on - strand, within rbfA at 348.656 kb on + strand, within rbfA at 348.693 kb on - strand, within rbfA at 348.744 kb on - strand, within rbfA at 348.758 kb on + strand, within rbfA at 348.761 kb on - strand, within rbfA at 348.763 kb on + strand, within rbfA at 348.768 kb on + strand, within rbfA at 348.771 kb on - strand, within rbfA at 348.797 kb on - strand, within rbfA at 348.824 kb on + strand, within rbfA at 348.845 kb on + strand at 348.867 kb on + strand at 348.892 kb on + strand at 348.907 kb on - strand at 348.910 kb on - strand at 348.914 kb on + strand at 348.917 kb on - strand at 348.935 kb on - strand at 348.953 kb on - strand, within ycf33 at 348.965 kb on - strand at 348.965 kb on - strand, within ycf33 at 349.164 kb on + strand at 349.206 kb on + strand at 349.206 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.220 kb on + strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.228 kb on - strand at 349.252 kb on + strand at 349.279 kb on + strand at 349.279 kb on + strand at 349.287 kb on - strand at 349.301 kb on + strand at 349.344 kb on - strand at 349.344 kb on - strand at 349.369 kb on + strand at 349.369 kb on + strand at 349.369 kb on + strand at 349.371 kb on - strand at 349.377 kb on - strand at 349.384 kb on + strand at 349.453 kb on - strand at 349.460 kb on - strand at 349.476 kb on - strand at 349.495 kb on + strand at 349.505 kb on - strand at 349.505 kb on - strand at 349.518 kb on + strand at 349.520 kb on - strand at 349.573 kb on + strand at 349.580 kb on - strand at 349.581 kb on - strand at 349.588 kb on + strand at 349.615 kb on + strand at 349.673 kb on - strand at 349.691 kb on - strand at 349.704 kb on + strand at 349.705 kb on + strand at 349.812 kb on + strand at 349.820 kb on - strand at 349.848 kb on + strand at 349.893 kb on + strand at 349.932 kb on - strand at 349.932 kb on - strand at 349.942 kb on - strand at 349.960 kb on - strand at 349.960 kb on - strand at 349.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml remove 347,927 - bgl Synpcc7942_0354 0.67 -1.6 347,985 - bgl Synpcc7942_0354 0.71 +0.8 348,018 + bgl Synpcc7942_0354 0.73 -0.0 348,035 + bgl Synpcc7942_0354 0.74 -1.0 348,035 + bgl Synpcc7942_0354 0.74 -0.6 348,090 + bgl Synpcc7942_0354 0.77 +0.7 348,099 - bgl Synpcc7942_0354 0.78 -1.4 348,102 - bgl Synpcc7942_0354 0.78 -0.5 348,112 - bgl Synpcc7942_0354 0.79 +1.5 348,120 - bgl Synpcc7942_0354 0.79 -0.0 348,123 + bgl Synpcc7942_0354 0.79 +0.5 348,131 - bgl Synpcc7942_0354 0.80 -0.2 348,141 - bgl Synpcc7942_0354 0.80 -0.0 348,149 + bgl Synpcc7942_0354 0.81 +1.0 348,157 - bgl Synpcc7942_0354 0.81 +1.4 348,165 + bgl Synpcc7942_0354 0.82 +1.5 348,178 - bgl Synpcc7942_0354 0.83 +3.0 348,178 - +1.3 348,183 - bgl Synpcc7942_0354 0.83 +0.7 348,201 + +1.0 348,245 + bgl Synpcc7942_0354 0.87 -0.1 348,273 - bgl Synpcc7942_0354 0.88 +0.8 348,344 - -1.0 348,344 - -0.3 348,349 - -1.0 348,381 + -2.0 348,393 + +0.5 348,403 + -2.0 348,415 + -0.0 348,415 + +1.1 348,422 + +0.4 348,423 - +1.6 348,423 - -2.0 348,423 - +2.0 348,427 + -0.0 348,435 - +1.4 348,468 - -2.4 348,473 - -0.0 348,475 + -1.0 348,475 + -0.6 348,475 + +2.0 348,489 + +0.3 348,496 - -0.7 348,573 - rbfA Synpcc7942_0355 0.28 -1.0 348,625 + rbfA Synpcc7942_0355 0.41 -2.0 348,633 - rbfA Synpcc7942_0355 0.43 -2.4 348,656 + rbfA Synpcc7942_0355 0.48 +0.3 348,693 - rbfA Synpcc7942_0355 0.57 +2.5 348,744 - rbfA Synpcc7942_0355 0.69 -0.6 348,758 + rbfA Synpcc7942_0355 0.73 -0.0 348,761 - rbfA Synpcc7942_0355 0.73 -1.6 348,763 + rbfA Synpcc7942_0355 0.74 -2.6 348,768 + rbfA Synpcc7942_0355 0.75 +0.5 348,771 - rbfA Synpcc7942_0355 0.76 -0.0 348,797 - rbfA Synpcc7942_0355 0.82 -2.0 348,824 + rbfA Synpcc7942_0355 0.89 -1.0 348,845 + +0.5 348,867 + +1.0 348,892 + +1.0 348,907 - +1.4 348,910 - -0.0 348,914 + +0.5 348,917 - -0.0 348,935 - -0.0 348,953 - ycf33 Synpcc7942_0356 0.14 -3.4 348,965 - -0.0 348,965 - ycf33 Synpcc7942_0356 0.19 +0.4 349,164 + -0.4 349,206 + -1.6 349,206 + +0.5 349,220 + +1.4 349,220 + -1.4 349,220 + +0.5 349,220 + -0.0 349,220 + -0.0 349,220 + -1.4 349,220 + +2.3 349,220 + -0.0 349,228 - +0.7 349,228 - -1.0 349,228 - +0.3 349,228 - -1.0 349,228 - -0.6 349,228 - -1.0 349,228 - -1.0 349,228 - -0.0 349,228 - +1.0 349,228 - -1.0 349,228 - +1.0 349,252 + +1.5 349,279 + -2.0 349,279 + -1.0 349,287 - -0.8 349,301 + +1.0 349,344 - +0.2 349,344 - +0.8 349,369 + +1.1 349,369 + +1.0 349,369 + -0.0 349,371 - +0.7 349,377 - -0.0 349,384 + +0.2 349,453 - -0.3 349,460 - +1.3 349,476 - +0.7 349,495 + +2.3 349,505 - -0.6 349,505 - -1.0 349,518 + -0.0 349,520 - +0.6 349,573 + -1.6 349,580 - -0.6 349,581 - +0.7 349,588 + +1.0 349,615 + +0.9 349,673 - +0.5 349,691 - -1.0 349,704 + -1.0 349,705 + -0.5 349,812 + -1.0 349,820 - -0.3 349,848 + +0.5 349,893 + -0.5 349,932 - +1.6 349,932 - +1.3 349,942 - -0.0 349,960 - -1.0 349,960 - +0.5 349,960 - -2.4
Or see this region's nucleotide sequence