Experiment: Chloramphenicol 0.0006640625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0344 and birA are separated by 84 nucleotides birA and Synpcc7942_0346 are separated by 45 nucleotides Synpcc7942_0346 and Synpcc7942_0347 are separated by 156 nucleotides
Synpcc7942_0344: Synpcc7942_0344 - probable peptidase, at 337,408 to 338,451
_0344
Synpcc7942_0345: birA - Biotin--acetyl-CoA-carboxylase ligase, at 338,536 to 339,306
birA
Synpcc7942_0346: Synpcc7942_0346 - Protein of unknown function DUF152, at 339,352 to 340,131
_0346
Synpcc7942_0347: Synpcc7942_0347 - hypothetical protein, at 340,288 to 340,452
_0347
Position (kb) 338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 337.540 kb on + strand, within Synpcc7942_0344 at 337.563 kb on - strand, within Synpcc7942_0344 at 337.593 kb on - strand, within Synpcc7942_0344 at 337.707 kb on + strand, within Synpcc7942_0344 at 337.719 kb on - strand, within Synpcc7942_0344 at 337.814 kb on + strand, within Synpcc7942_0344 at 337.821 kb on - strand, within Synpcc7942_0344 at 337.821 kb on - strand, within Synpcc7942_0344 at 337.846 kb on + strand, within Synpcc7942_0344 at 337.854 kb on - strand, within Synpcc7942_0344 at 337.854 kb on - strand, within Synpcc7942_0344 at 337.870 kb on + strand, within Synpcc7942_0344 at 337.870 kb on + strand, within Synpcc7942_0344 at 337.880 kb on + strand at 337.951 kb on - strand, within Synpcc7942_0344 at 337.958 kb on + strand, within Synpcc7942_0344 at 337.966 kb on - strand, within Synpcc7942_0344 at 337.980 kb on + strand, within Synpcc7942_0344 at 338.009 kb on + strand, within Synpcc7942_0344 at 338.009 kb on + strand, within Synpcc7942_0344 at 338.017 kb on - strand, within Synpcc7942_0344 at 338.042 kb on - strand, within Synpcc7942_0344 at 338.046 kb on - strand, within Synpcc7942_0344 at 338.121 kb on - strand, within Synpcc7942_0344 at 338.220 kb on + strand, within Synpcc7942_0344 at 338.281 kb on + strand, within Synpcc7942_0344 at 338.320 kb on - strand, within Synpcc7942_0344 at 338.320 kb on - strand, within Synpcc7942_0344 at 338.331 kb on - strand, within Synpcc7942_0344 at 338.379 kb on - strand at 338.402 kb on + strand at 338.405 kb on - strand at 338.421 kb on - strand at 338.435 kb on - strand at 338.435 kb on - strand at 338.437 kb on - strand at 338.446 kb on + strand at 338.454 kb on - strand at 338.454 kb on - strand at 338.463 kb on - strand at 338.464 kb on - strand at 338.480 kb on + strand at 338.485 kb on - strand at 338.488 kb on - strand at 338.492 kb on + strand at 338.492 kb on + strand at 338.515 kb on - strand at 338.534 kb on + strand at 338.566 kb on - strand at 339.336 kb on + strand at 339.344 kb on + strand at 339.371 kb on - strand at 339.532 kb on - strand, within Synpcc7942_0346 at 339.544 kb on + strand, within Synpcc7942_0346 at 339.600 kb on + strand, within Synpcc7942_0346 at 339.628 kb on + strand, within Synpcc7942_0346 at 339.653 kb on + strand, within Synpcc7942_0346 at 339.686 kb on + strand, within Synpcc7942_0346 at 339.689 kb on - strand, within Synpcc7942_0346 at 339.830 kb on - strand, within Synpcc7942_0346 at 339.830 kb on - strand, within Synpcc7942_0346 at 339.847 kb on + strand, within Synpcc7942_0346 at 339.937 kb on + strand, within Synpcc7942_0346 at 340.034 kb on - strand, within Synpcc7942_0346 at 340.095 kb on + strand at 340.140 kb on + strand at 340.196 kb on - strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.222 kb on + strand at 340.230 kb on - strand at 340.230 kb on - strand at 340.230 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml remove 337,540 + Synpcc7942_0344 0.13 -1.6 337,563 - Synpcc7942_0344 0.15 -1.0 337,593 - Synpcc7942_0344 0.18 -0.0 337,707 + Synpcc7942_0344 0.29 -1.0 337,719 - Synpcc7942_0344 0.30 -1.0 337,814 + Synpcc7942_0344 0.39 -0.0 337,821 - Synpcc7942_0344 0.40 -1.0 337,821 - Synpcc7942_0344 0.40 -2.2 337,846 + Synpcc7942_0344 0.42 -2.4 337,854 - Synpcc7942_0344 0.43 -0.0 337,854 - Synpcc7942_0344 0.43 -1.0 337,870 + Synpcc7942_0344 0.44 -1.0 337,870 + Synpcc7942_0344 0.44 -2.8 337,880 + +1.0 337,951 - Synpcc7942_0344 0.52 -0.0 337,958 + Synpcc7942_0344 0.53 -0.0 337,966 - Synpcc7942_0344 0.53 -0.0 337,980 + Synpcc7942_0344 0.55 -1.0 338,009 + Synpcc7942_0344 0.58 -2.4 338,009 + Synpcc7942_0344 0.58 -2.8 338,017 - Synpcc7942_0344 0.58 -1.0 338,042 - Synpcc7942_0344 0.61 -2.0 338,046 - Synpcc7942_0344 0.61 -2.0 338,121 - Synpcc7942_0344 0.68 -1.6 338,220 + Synpcc7942_0344 0.78 -1.0 338,281 + Synpcc7942_0344 0.84 -0.4 338,320 - Synpcc7942_0344 0.87 -3.4 338,320 - Synpcc7942_0344 0.87 -0.0 338,331 - Synpcc7942_0344 0.88 -2.0 338,379 - -0.0 338,402 + -1.0 338,405 - -1.4 338,421 - -1.6 338,435 - -0.0 338,435 - +1.5 338,437 - +0.5 338,446 + +1.0 338,454 - -1.0 338,454 - -1.0 338,463 - +2.0 338,464 - -1.5 338,480 + +1.4 338,485 - -0.6 338,488 - -1.0 338,492 + +1.0 338,492 + +2.8 338,515 - -0.0 338,534 + -0.8 338,566 - +2.1 339,336 + +2.3 339,344 + +0.7 339,371 - +1.4 339,532 - Synpcc7942_0346 0.23 -1.0 339,544 + Synpcc7942_0346 0.25 -0.0 339,600 + Synpcc7942_0346 0.32 -0.0 339,628 + Synpcc7942_0346 0.35 +1.0 339,653 + Synpcc7942_0346 0.39 -1.0 339,686 + Synpcc7942_0346 0.43 -2.4 339,689 - Synpcc7942_0346 0.43 +1.0 339,830 - Synpcc7942_0346 0.61 -1.0 339,830 - Synpcc7942_0346 0.61 -1.0 339,847 + Synpcc7942_0346 0.63 -0.0 339,937 + Synpcc7942_0346 0.75 +0.3 340,034 - Synpcc7942_0346 0.87 -0.6 340,095 + -0.0 340,140 + -0.5 340,196 - -1.6 340,222 + -0.3 340,222 + +0.7 340,222 + +0.5 340,222 + -1.6 340,222 + -0.0 340,230 - -0.8 340,230 - -1.0 340,230 - -2.6
Or see this region's nucleotide sequence