Experiment: Chloramphenicol 0.0006640625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0238 and petJ are separated by 6 nucleotides petJ and apcD are separated by 181 nucleotides apcD and rumA are separated by 144 nucleotides
Synpcc7942_0238: Synpcc7942_0238 - hypothetical protein, at 233,143 to 234,324
_0238
Synpcc7942_0239: petJ - cytochrome C6 soluble cytochrome f, at 234,331 to 234,669
petJ
Synpcc7942_0240: apcD - hypothetical protein, at 234,851 to 235,342
apcD
Synpcc7942_0241: rumA - 23S rRNA (uracil-5-)-methyltransferase RumA, at 235,487 to 236,854
rumA
Position (kb) 234
235
236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 233.855 kb on + strand, within Synpcc7942_0238 at 233.863 kb on - strand, within Synpcc7942_0238 at 233.873 kb on - strand, within Synpcc7942_0238 at 233.880 kb on - strand, within Synpcc7942_0238 at 233.882 kb on + strand, within Synpcc7942_0238 at 233.884 kb on + strand, within Synpcc7942_0238 at 233.900 kb on - strand, within Synpcc7942_0238 at 233.901 kb on - strand, within Synpcc7942_0238 at 233.969 kb on - strand, within Synpcc7942_0238 at 234.011 kb on + strand, within Synpcc7942_0238 at 234.019 kb on - strand, within Synpcc7942_0238 at 234.036 kb on - strand, within Synpcc7942_0238 at 234.036 kb on - strand, within Synpcc7942_0238 at 234.036 kb on - strand, within Synpcc7942_0238 at 234.041 kb on - strand, within Synpcc7942_0238 at 234.041 kb on - strand, within Synpcc7942_0238 at 234.051 kb on - strand, within Synpcc7942_0238 at 234.051 kb on - strand, within Synpcc7942_0238 at 234.074 kb on - strand, within Synpcc7942_0238 at 234.075 kb on - strand, within Synpcc7942_0238 at 234.075 kb on - strand, within Synpcc7942_0238 at 234.075 kb on - strand, within Synpcc7942_0238 at 234.075 kb on - strand, within Synpcc7942_0238 at 234.080 kb on + strand, within Synpcc7942_0238 at 234.129 kb on + strand, within Synpcc7942_0238 at 234.137 kb on - strand, within Synpcc7942_0238 at 234.139 kb on + strand, within Synpcc7942_0238 at 234.139 kb on + strand, within Synpcc7942_0238 at 234.139 kb on + strand, within Synpcc7942_0238 at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand, within Synpcc7942_0238 at 234.147 kb on - strand, within Synpcc7942_0238 at 234.149 kb on + strand at 234.149 kb on + strand, within Synpcc7942_0238 at 234.149 kb on + strand, within Synpcc7942_0238 at 234.149 kb on + strand, within Synpcc7942_0238 at 234.154 kb on + strand, within Synpcc7942_0238 at 234.157 kb on - strand, within Synpcc7942_0238 at 234.182 kb on + strand, within Synpcc7942_0238 at 234.182 kb on + strand, within Synpcc7942_0238 at 234.185 kb on - strand, within Synpcc7942_0238 at 234.185 kb on - strand, within Synpcc7942_0238 at 234.185 kb on - strand, within Synpcc7942_0238 at 234.185 kb on - strand, within Synpcc7942_0238 at 234.190 kb on - strand at 234.190 kb on - strand, within Synpcc7942_0238 at 234.190 kb on - strand, within Synpcc7942_0238 at 234.192 kb on + strand, within Synpcc7942_0238 at 234.192 kb on + strand, within Synpcc7942_0238 at 234.200 kb on - strand, within Synpcc7942_0238 at 234.200 kb on - strand, within Synpcc7942_0238 at 234.200 kb on - strand, within Synpcc7942_0238 at 234.200 kb on - strand, within Synpcc7942_0238 at 234.215 kb on + strand at 234.223 kb on - strand at 234.231 kb on + strand at 234.246 kb on + strand at 234.251 kb on + strand at 234.253 kb on + strand at 234.254 kb on - strand at 234.259 kb on - strand at 234.259 kb on - strand at 234.273 kb on + strand at 234.273 kb on + strand at 234.281 kb on - strand at 234.282 kb on + strand at 234.299 kb on + strand at 234.299 kb on + strand at 234.299 kb on + strand at 234.312 kb on - strand at 234.317 kb on - strand at 234.317 kb on - strand at 234.317 kb on - strand at 234.317 kb on - strand at 234.317 kb on - strand at 234.339 kb on - strand at 234.341 kb on + strand at 234.349 kb on - strand at 234.349 kb on - strand at 234.391 kb on - strand, within petJ at 234.398 kb on + strand, within petJ at 234.398 kb on + strand, within petJ at 234.398 kb on + strand, within petJ at 234.401 kb on - strand, within petJ at 234.401 kb on - strand, within petJ at 234.401 kb on - strand, within petJ at 234.401 kb on - strand, within petJ at 234.406 kb on - strand, within petJ at 234.406 kb on - strand, within petJ at 234.412 kb on + strand, within petJ at 234.478 kb on - strand, within petJ at 234.480 kb on - strand, within petJ at 234.482 kb on - strand, within petJ at 234.487 kb on + strand, within petJ at 234.487 kb on + strand, within petJ at 234.495 kb on - strand, within petJ at 234.563 kb on + strand, within petJ at 234.581 kb on - strand, within petJ at 234.581 kb on - strand, within petJ at 234.614 kb on + strand, within petJ at 234.614 kb on + strand, within petJ at 234.614 kb on + strand, within petJ at 234.620 kb on + strand, within petJ at 234.646 kb on + strand at 234.646 kb on + strand at 234.646 kb on + strand at 234.646 kb on + strand at 234.646 kb on + strand at 234.654 kb on - strand at 234.654 kb on - strand at 234.654 kb on - strand at 234.794 kb on + strand at 234.795 kb on - strand at 234.839 kb on + strand at 234.848 kb on + strand at 234.849 kb on + strand at 234.857 kb on - strand at 234.915 kb on + strand, within apcD at 234.917 kb on + strand, within apcD at 234.920 kb on + strand, within apcD at 234.920 kb on - strand, within apcD at 234.923 kb on - strand, within apcD at 234.923 kb on - strand, within apcD at 234.925 kb on + strand, within apcD at 234.925 kb on - strand, within apcD at 234.982 kb on + strand, within apcD at 234.992 kb on - strand, within apcD at 235.008 kb on + strand, within apcD at 235.013 kb on + strand, within apcD at 235.013 kb on + strand, within apcD at 235.018 kb on + strand, within apcD at 235.021 kb on - strand, within apcD at 235.026 kb on - strand, within apcD at 235.026 kb on - strand, within apcD at 235.047 kb on - strand, within apcD at 235.049 kb on + strand, within apcD at 235.057 kb on - strand, within apcD at 235.057 kb on - strand, within apcD at 235.103 kb on - strand, within apcD at 235.107 kb on - strand, within apcD at 235.109 kb on + strand, within apcD at 235.113 kb on - strand, within apcD at 235.114 kb on + strand, within apcD at 235.120 kb on + strand, within apcD at 235.142 kb on - strand, within apcD at 235.181 kb on + strand, within apcD at 235.220 kb on - strand, within apcD at 235.220 kb on - strand, within apcD at 235.263 kb on + strand, within apcD at 235.276 kb on - strand, within apcD at 235.335 kb on - strand at 235.374 kb on - strand at 235.376 kb on - strand at 235.384 kb on - strand at 235.415 kb on - strand at 235.447 kb on - strand at 235.447 kb on - strand at 235.468 kb on - strand at 235.473 kb on + strand at 235.478 kb on - strand at 235.491 kb on - strand at 235.550 kb on + strand at 235.550 kb on + strand at 235.558 kb on - strand at 235.576 kb on - strand at 235.588 kb on - strand at 235.593 kb on - strand at 235.608 kb on + strand at 235.608 kb on + strand at 235.666 kb on - strand, within rumA at 235.685 kb on + strand at 235.685 kb on + strand, within rumA at 235.693 kb on - strand, within rumA at 235.693 kb on - strand, within rumA at 235.715 kb on - strand, within rumA at 235.753 kb on + strand, within rumA at 235.760 kb on + strand, within rumA at 235.765 kb on + strand, within rumA at 235.765 kb on + strand, within rumA at 235.770 kb on + strand, within rumA at 235.775 kb on + strand, within rumA at 235.775 kb on + strand, within rumA at 235.778 kb on - strand, within rumA at 235.783 kb on - strand, within rumA at 235.811 kb on + strand, within rumA at 235.817 kb on - strand, within rumA at 235.821 kb on + strand, within rumA at 235.879 kb on - strand, within rumA at 235.879 kb on - strand, within rumA at 235.881 kb on + strand, within rumA at 235.884 kb on - strand, within rumA at 235.889 kb on + strand, within rumA at 235.927 kb on + strand, within rumA at 235.936 kb on - strand, within rumA at 235.968 kb on - strand, within rumA at 235.979 kb on - strand, within rumA at 235.979 kb on - strand, within rumA at 235.983 kb on + strand, within rumA at 236.006 kb on + strand at 236.023 kb on + strand, within rumA at 236.023 kb on + strand at 236.023 kb on + strand, within rumA at 236.023 kb on + strand, within rumA at 236.031 kb on - strand, within rumA at 236.031 kb on - strand, within rumA at 236.042 kb on + strand, within rumA at 236.060 kb on - strand, within rumA at 236.074 kb on - strand, within rumA at 236.079 kb on + strand, within rumA at 236.102 kb on - strand, within rumA at 236.124 kb on - strand, within rumA at 236.132 kb on - strand, within rumA at 236.139 kb on + strand, within rumA at 236.161 kb on + strand, within rumA at 236.176 kb on + strand, within rumA at 236.194 kb on - strand, within rumA at 236.205 kb on + strand, within rumA at 236.205 kb on + strand, within rumA at 236.220 kb on + strand, within rumA at 236.233 kb on + strand, within rumA at 236.233 kb on + strand, within rumA at 236.246 kb on - strand, within rumA at 236.265 kb on - strand, within rumA at 236.292 kb on + strand, within rumA at 236.302 kb on + strand, within rumA at 236.310 kb on - strand, within rumA
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml remove 233,855 + Synpcc7942_0238 0.60 +0.3 233,863 - Synpcc7942_0238 0.61 -0.0 233,873 - Synpcc7942_0238 0.62 -0.3 233,880 - Synpcc7942_0238 0.62 -1.6 233,882 + Synpcc7942_0238 0.63 -0.0 233,884 + Synpcc7942_0238 0.63 +1.6 233,900 - Synpcc7942_0238 0.64 +0.6 233,901 - Synpcc7942_0238 0.64 -0.0 233,969 - Synpcc7942_0238 0.70 -0.6 234,011 + Synpcc7942_0238 0.73 -0.6 234,019 - Synpcc7942_0238 0.74 -0.3 234,036 - Synpcc7942_0238 0.76 -1.0 234,036 - Synpcc7942_0238 0.76 -1.0 234,036 - Synpcc7942_0238 0.76 -1.6 234,041 - Synpcc7942_0238 0.76 -1.0 234,041 - Synpcc7942_0238 0.76 -0.3 234,051 - Synpcc7942_0238 0.77 -0.6 234,051 - Synpcc7942_0238 0.77 +1.8 234,074 - Synpcc7942_0238 0.79 -0.4 234,075 - Synpcc7942_0238 0.79 +1.0 234,075 - Synpcc7942_0238 0.79 +2.0 234,075 - Synpcc7942_0238 0.79 -0.4 234,075 - Synpcc7942_0238 0.79 -0.6 234,080 + Synpcc7942_0238 0.79 +0.9 234,129 + Synpcc7942_0238 0.83 -1.0 234,137 - Synpcc7942_0238 0.84 +0.6 234,139 + Synpcc7942_0238 0.84 +1.6 234,139 + Synpcc7942_0238 0.84 -1.0 234,139 + Synpcc7942_0238 0.84 +1.0 234,147 - Synpcc7942_0238 0.85 -1.0 234,147 - -0.0 234,147 - Synpcc7942_0238 0.85 -0.2 234,147 - Synpcc7942_0238 0.85 +1.0 234,147 - Synpcc7942_0238 0.85 -1.0 234,147 - -0.0 234,147 - Synpcc7942_0238 0.85 -0.1 234,147 - Synpcc7942_0238 0.85 +1.3 234,147 - Synpcc7942_0238 0.85 -1.0 234,149 + +1.6 234,149 + Synpcc7942_0238 0.85 -1.7 234,149 + Synpcc7942_0238 0.85 +0.7 234,149 + Synpcc7942_0238 0.85 +1.0 234,154 + Synpcc7942_0238 0.86 +0.6 234,157 - Synpcc7942_0238 0.86 -0.9 234,182 + Synpcc7942_0238 0.88 -0.0 234,182 + Synpcc7942_0238 0.88 -1.0 234,185 - Synpcc7942_0238 0.88 -1.0 234,185 - Synpcc7942_0238 0.88 +1.9 234,185 - Synpcc7942_0238 0.88 +1.0 234,185 - Synpcc7942_0238 0.88 +0.4 234,190 - -0.0 234,190 - Synpcc7942_0238 0.89 +1.6 234,190 - Synpcc7942_0238 0.89 -0.8 234,192 + Synpcc7942_0238 0.89 -0.0 234,192 + Synpcc7942_0238 0.89 +1.1 234,200 - Synpcc7942_0238 0.89 -2.4 234,200 - Synpcc7942_0238 0.89 -0.0 234,200 - Synpcc7942_0238 0.89 -0.0 234,200 - Synpcc7942_0238 0.89 +2.6 234,215 + +0.7 234,223 - +0.8 234,231 + -0.0 234,246 + +1.6 234,251 + -0.0 234,253 + -1.0 234,254 - -0.2 234,259 - -1.0 234,259 - -1.0 234,273 + +2.3 234,273 + -0.0 234,281 - +1.6 234,282 + -1.0 234,299 + +1.8 234,299 + -0.0 234,299 + -1.0 234,312 - +2.1 234,317 - -0.0 234,317 - -0.4 234,317 - +2.1 234,317 - -0.0 234,317 - -0.0 234,339 - +0.1 234,341 + +0.8 234,349 - +1.0 234,349 - -0.6 234,391 - petJ Synpcc7942_0239 0.18 -0.4 234,398 + petJ Synpcc7942_0239 0.20 -0.0 234,398 + petJ Synpcc7942_0239 0.20 +1.7 234,398 + petJ Synpcc7942_0239 0.20 +0.7 234,401 - petJ Synpcc7942_0239 0.21 -2.0 234,401 - petJ Synpcc7942_0239 0.21 -1.0 234,401 - petJ Synpcc7942_0239 0.21 -0.6 234,401 - petJ Synpcc7942_0239 0.21 -1.4 234,406 - petJ Synpcc7942_0239 0.22 +1.5 234,406 - petJ Synpcc7942_0239 0.22 +1.2 234,412 + petJ Synpcc7942_0239 0.24 +0.4 234,478 - petJ Synpcc7942_0239 0.43 -2.4 234,480 - petJ Synpcc7942_0239 0.44 +1.0 234,482 - petJ Synpcc7942_0239 0.45 -1.9 234,487 + petJ Synpcc7942_0239 0.46 +2.0 234,487 + petJ Synpcc7942_0239 0.46 +0.9 234,495 - petJ Synpcc7942_0239 0.48 +1.0 234,563 + petJ Synpcc7942_0239 0.68 +0.3 234,581 - petJ Synpcc7942_0239 0.74 -0.0 234,581 - petJ Synpcc7942_0239 0.74 -0.6 234,614 + petJ Synpcc7942_0239 0.83 +4.5 234,614 + petJ Synpcc7942_0239 0.83 +1.6 234,614 + petJ Synpcc7942_0239 0.83 +6.4 234,620 + petJ Synpcc7942_0239 0.85 -0.0 234,646 + +1.6 234,646 + +1.0 234,646 + +0.6 234,646 + +2.8 234,646 + -0.6 234,654 - -0.0 234,654 - +1.6 234,654 - -0.4 234,794 + +1.3 234,795 - -0.0 234,839 + -0.4 234,848 + -0.2 234,849 + +4.5 234,857 - +0.6 234,915 + apcD Synpcc7942_0240 0.13 +1.6 234,917 + apcD Synpcc7942_0240 0.13 -0.5 234,920 + apcD Synpcc7942_0240 0.14 -0.0 234,920 - apcD Synpcc7942_0240 0.14 +1.0 234,923 - apcD Synpcc7942_0240 0.15 -0.0 234,923 - apcD Synpcc7942_0240 0.15 -0.0 234,925 + apcD Synpcc7942_0240 0.15 -0.4 234,925 - apcD Synpcc7942_0240 0.15 +1.0 234,982 + apcD Synpcc7942_0240 0.27 -0.6 234,992 - apcD Synpcc7942_0240 0.29 -0.8 235,008 + apcD Synpcc7942_0240 0.32 -3.7 235,013 + apcD Synpcc7942_0240 0.33 +0.6 235,013 + apcD Synpcc7942_0240 0.33 +0.0 235,018 + apcD Synpcc7942_0240 0.34 -1.0 235,021 - apcD Synpcc7942_0240 0.35 -1.0 235,026 - apcD Synpcc7942_0240 0.36 -0.2 235,026 - apcD Synpcc7942_0240 0.36 -1.0 235,047 - apcD Synpcc7942_0240 0.40 -1.0 235,049 + apcD Synpcc7942_0240 0.40 -0.0 235,057 - apcD Synpcc7942_0240 0.42 +1.6 235,057 - apcD Synpcc7942_0240 0.42 -2.4 235,103 - apcD Synpcc7942_0240 0.51 +3.3 235,107 - apcD Synpcc7942_0240 0.52 +1.2 235,109 + apcD Synpcc7942_0240 0.52 -1.4 235,113 - apcD Synpcc7942_0240 0.53 -2.6 235,114 + apcD Synpcc7942_0240 0.53 +1.0 235,120 + apcD Synpcc7942_0240 0.55 +1.0 235,142 - apcD Synpcc7942_0240 0.59 -0.4 235,181 + apcD Synpcc7942_0240 0.67 +0.2 235,220 - apcD Synpcc7942_0240 0.75 -0.6 235,220 - apcD Synpcc7942_0240 0.75 -0.0 235,263 + apcD Synpcc7942_0240 0.84 -0.4 235,276 - apcD Synpcc7942_0240 0.86 -0.0 235,335 - +0.2 235,374 - +1.3 235,376 - -2.6 235,384 - -0.6 235,415 - -1.0 235,447 - +1.6 235,447 - +1.8 235,468 - +1.0 235,473 + +1.6 235,478 - +0.6 235,491 - +2.9 235,550 + +1.1 235,550 + +1.0 235,558 - +1.6 235,576 - +1.4 235,588 - +0.6 235,593 - -1.0 235,608 + +1.6 235,608 + +1.0 235,666 - rumA Synpcc7942_0241 0.13 +1.0 235,685 + -1.0 235,685 + rumA Synpcc7942_0241 0.14 +1.0 235,693 - rumA Synpcc7942_0241 0.15 -2.6 235,693 - rumA Synpcc7942_0241 0.15 -0.0 235,715 - rumA Synpcc7942_0241 0.17 +0.5 235,753 + rumA Synpcc7942_0241 0.19 +0.4 235,760 + rumA Synpcc7942_0241 0.20 +0.6 235,765 + rumA Synpcc7942_0241 0.20 +0.6 235,765 + rumA Synpcc7942_0241 0.20 +2.6 235,770 + rumA Synpcc7942_0241 0.21 -0.6 235,775 + rumA Synpcc7942_0241 0.21 -0.0 235,775 + rumA Synpcc7942_0241 0.21 -0.6 235,778 - rumA Synpcc7942_0241 0.21 +0.3 235,783 - rumA Synpcc7942_0241 0.22 -1.0 235,811 + rumA Synpcc7942_0241 0.24 +2.0 235,817 - rumA Synpcc7942_0241 0.24 +1.7 235,821 + rumA Synpcc7942_0241 0.24 -0.8 235,879 - rumA Synpcc7942_0241 0.29 -0.0 235,879 - rumA Synpcc7942_0241 0.29 -1.8 235,881 + rumA Synpcc7942_0241 0.29 -0.7 235,884 - rumA Synpcc7942_0241 0.29 +0.1 235,889 + rumA Synpcc7942_0241 0.29 +2.1 235,927 + rumA Synpcc7942_0241 0.32 +1.9 235,936 - rumA Synpcc7942_0241 0.33 +1.7 235,968 - rumA Synpcc7942_0241 0.35 +1.3 235,979 - rumA Synpcc7942_0241 0.36 -0.0 235,979 - rumA Synpcc7942_0241 0.36 -0.0 235,983 + rumA Synpcc7942_0241 0.36 +0.1 236,006 + +1.0 236,023 + rumA Synpcc7942_0241 0.39 +1.6 236,023 + -0.0 236,023 + rumA Synpcc7942_0241 0.39 +1.0 236,023 + rumA Synpcc7942_0241 0.39 -1.9 236,031 - rumA Synpcc7942_0241 0.40 +1.0 236,031 - rumA Synpcc7942_0241 0.40 -0.0 236,042 + rumA Synpcc7942_0241 0.41 -1.6 236,060 - rumA Synpcc7942_0241 0.42 +1.3 236,074 - rumA Synpcc7942_0241 0.43 -0.6 236,079 + rumA Synpcc7942_0241 0.43 -1.6 236,102 - rumA Synpcc7942_0241 0.45 +0.2 236,124 - rumA Synpcc7942_0241 0.47 +0.6 236,132 - rumA Synpcc7942_0241 0.47 +1.4 236,139 + rumA Synpcc7942_0241 0.48 +0.6 236,161 + rumA Synpcc7942_0241 0.49 +1.0 236,176 + rumA Synpcc7942_0241 0.50 +1.3 236,194 - rumA Synpcc7942_0241 0.52 +1.7 236,205 + rumA Synpcc7942_0241 0.52 -0.3 236,205 + rumA Synpcc7942_0241 0.52 +1.6 236,220 + rumA Synpcc7942_0241 0.54 +1.0 236,233 + rumA Synpcc7942_0241 0.55 -0.0 236,233 + rumA Synpcc7942_0241 0.55 -2.6 236,246 - rumA Synpcc7942_0241 0.55 -1.0 236,265 - rumA Synpcc7942_0241 0.57 -0.4 236,292 + rumA Synpcc7942_0241 0.59 -0.0 236,302 + rumA Synpcc7942_0241 0.60 -0.6 236,310 - rumA Synpcc7942_0241 0.60 +0.4
Or see this region's nucleotide sequence