Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0070

Experiment: Chloramphenicol 0.0006640625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0068 and Synpcc7942_0069 are separated by 98 nucleotidesSynpcc7942_0069 and Synpcc7942_0070 are separated by 2 nucleotidesSynpcc7942_0070 and degT are separated by 1 nucleotides Synpcc7942_0068: Synpcc7942_0068 - ATPase, at 67,991 to 68,980 _0068 Synpcc7942_0069: Synpcc7942_0069 - hypothetical protein, at 69,079 to 69,375 _0069 Synpcc7942_0070: Synpcc7942_0070 - hypothetical protein, at 69,378 to 69,938 _0070 Synpcc7942_0071: degT - pleiotropic regulatory protein-like, at 69,940 to 71,139 degT Position (kb) 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 68.407 kb on - strand, within Synpcc7942_0068at 68.407 kb on - strand, within Synpcc7942_0068at 68.478 kb on + strand, within Synpcc7942_0068at 68.512 kb on + strand, within Synpcc7942_0068at 68.515 kb on - strand, within Synpcc7942_0068at 68.521 kb on - strand, within Synpcc7942_0068at 68.522 kb on - strand, within Synpcc7942_0068at 68.538 kb on + strandat 68.538 kb on + strand, within Synpcc7942_0068at 68.538 kb on + strand, within Synpcc7942_0068at 68.546 kb on - strand, within Synpcc7942_0068at 68.546 kb on - strand, within Synpcc7942_0068at 68.546 kb on - strand, within Synpcc7942_0068at 68.546 kb on - strand, within Synpcc7942_0068at 68.560 kb on + strand, within Synpcc7942_0068at 68.576 kb on + strand, within Synpcc7942_0068at 68.581 kb on + strand, within Synpcc7942_0068at 68.583 kb on + strand, within Synpcc7942_0068at 68.589 kb on - strand, within Synpcc7942_0068at 68.610 kb on - strandat 68.637 kb on + strand, within Synpcc7942_0068at 68.637 kb on + strand, within Synpcc7942_0068at 68.645 kb on - strand, within Synpcc7942_0068at 68.645 kb on - strand, within Synpcc7942_0068at 68.645 kb on - strand, within Synpcc7942_0068at 68.645 kb on - strand, within Synpcc7942_0068at 68.655 kb on + strand, within Synpcc7942_0068at 68.663 kb on - strand, within Synpcc7942_0068at 68.663 kb on - strand, within Synpcc7942_0068at 68.681 kb on - strand, within Synpcc7942_0068at 68.685 kb on + strand, within Synpcc7942_0068at 68.688 kb on - strand, within Synpcc7942_0068at 68.693 kb on - strand, within Synpcc7942_0068at 68.693 kb on - strand, within Synpcc7942_0068at 68.693 kb on - strand, within Synpcc7942_0068at 68.693 kb on - strand, within Synpcc7942_0068at 68.731 kb on - strand, within Synpcc7942_0068at 68.733 kb on - strand, within Synpcc7942_0068at 68.741 kb on - strand, within Synpcc7942_0068at 68.744 kb on + strand, within Synpcc7942_0068at 68.797 kb on - strand, within Synpcc7942_0068at 68.818 kb on - strand, within Synpcc7942_0068at 68.822 kb on + strandat 68.823 kb on - strand, within Synpcc7942_0068at 68.830 kb on - strand, within Synpcc7942_0068at 68.830 kb on - strand, within Synpcc7942_0068at 68.888 kb on + strandat 68.890 kb on + strandat 68.896 kb on - strandat 68.910 kb on + strandat 68.910 kb on + strandat 68.915 kb on - strandat 68.918 kb on - strandat 68.925 kb on - strandat 68.952 kb on - strandat 68.972 kb on + strandat 68.980 kb on - strandat 68.985 kb on + strandat 68.985 kb on - strandat 68.991 kb on + strandat 68.996 kb on + strandat 68.996 kb on + strandat 68.996 kb on + strandat 69.001 kb on + strandat 69.001 kb on + strandat 69.004 kb on - strandat 69.004 kb on - strandat 69.009 kb on - strandat 69.009 kb on - strandat 69.014 kb on - strandat 69.016 kb on + strandat 69.016 kb on - strandat 69.080 kb on - strandat 69.080 kb on - strandat 69.160 kb on + strand, within Synpcc7942_0069at 69.160 kb on + strand, within Synpcc7942_0069at 69.168 kb on - strand, within Synpcc7942_0069at 69.173 kb on - strand, within Synpcc7942_0069at 69.179 kb on - strand, within Synpcc7942_0069at 69.214 kb on + strand, within Synpcc7942_0069at 69.214 kb on + strand, within Synpcc7942_0069at 69.217 kb on + strandat 69.230 kb on - strand, within Synpcc7942_0069at 69.235 kb on - strand, within Synpcc7942_0069at 69.253 kb on + strand, within Synpcc7942_0069at 69.261 kb on - strand, within Synpcc7942_0069at 69.287 kb on + strand, within Synpcc7942_0069at 69.287 kb on + strand, within Synpcc7942_0069at 69.287 kb on + strand, within Synpcc7942_0069at 69.289 kb on + strand, within Synpcc7942_0069at 69.292 kb on + strand, within Synpcc7942_0069at 69.297 kb on + strand, within Synpcc7942_0069at 69.297 kb on + strand, within Synpcc7942_0069at 69.297 kb on + strand, within Synpcc7942_0069at 69.297 kb on + strand, within Synpcc7942_0069at 69.300 kb on - strand, within Synpcc7942_0069at 69.305 kb on - strand, within Synpcc7942_0069at 69.307 kb on - strand, within Synpcc7942_0069at 69.347 kb on - strandat 69.370 kb on - strandat 69.377 kb on - strandat 69.422 kb on + strandat 69.422 kb on + strandat 69.430 kb on - strandat 69.502 kb on - strand, within Synpcc7942_0070at 69.502 kb on - strand, within Synpcc7942_0070at 69.515 kb on + strand, within Synpcc7942_0070at 69.515 kb on + strand, within Synpcc7942_0070at 69.551 kb on + strand, within Synpcc7942_0070at 69.552 kb on + strand, within Synpcc7942_0070at 69.560 kb on - strand, within Synpcc7942_0070at 69.562 kb on + strand, within Synpcc7942_0070at 69.562 kb on + strand, within Synpcc7942_0070at 69.562 kb on + strand, within Synpcc7942_0070at 69.562 kb on + strand, within Synpcc7942_0070at 69.562 kb on + strand, within Synpcc7942_0070at 69.562 kb on + strand, within Synpcc7942_0070at 69.570 kb on - strand, within Synpcc7942_0070at 69.570 kb on - strand, within Synpcc7942_0070at 69.570 kb on - strand, within Synpcc7942_0070at 69.570 kb on - strand, within Synpcc7942_0070at 69.570 kb on - strand, within Synpcc7942_0070at 69.570 kb on - strand, within Synpcc7942_0070at 69.574 kb on + strand, within Synpcc7942_0070at 69.577 kb on + strand, within Synpcc7942_0070at 69.577 kb on - strand, within Synpcc7942_0070at 69.582 kb on + strand, within Synpcc7942_0070at 69.582 kb on - strand, within Synpcc7942_0070at 69.585 kb on - strandat 69.645 kb on + strand, within Synpcc7942_0070at 69.710 kb on - strand, within Synpcc7942_0070at 69.739 kb on + strand, within Synpcc7942_0070at 69.779 kb on - strand, within Synpcc7942_0070at 69.845 kb on - strand, within Synpcc7942_0070at 69.909 kb on + strandat 69.909 kb on + strandat 69.909 kb on + strandat 69.909 kb on + strandat 69.917 kb on - strandat 69.917 kb on - strandat 69.917 kb on - strandat 69.929 kb on + strandat 69.934 kb on + strandat 69.946 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml
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68,407 - Synpcc7942_0068 0.42 -0.0
68,407 - Synpcc7942_0068 0.42 -1.4
68,478 + Synpcc7942_0068 0.49 -3.0
68,512 + Synpcc7942_0068 0.53 -2.0
68,515 - Synpcc7942_0068 0.53 -2.4
68,521 - Synpcc7942_0068 0.54 +1.2
68,522 - Synpcc7942_0068 0.54 +1.0
68,538 + -0.0
68,538 + Synpcc7942_0068 0.55 -1.6
68,538 + Synpcc7942_0068 0.55 +1.0
68,546 - Synpcc7942_0068 0.56 -1.0
68,546 - Synpcc7942_0068 0.56 -0.5
68,546 - Synpcc7942_0068 0.56 +1.6
68,546 - Synpcc7942_0068 0.56 -0.6
68,560 + Synpcc7942_0068 0.57 -1.6
68,576 + Synpcc7942_0068 0.59 -0.0
68,581 + Synpcc7942_0068 0.60 -3.7
68,583 + Synpcc7942_0068 0.60 -0.4
68,589 - Synpcc7942_0068 0.60 -0.0
68,610 - -0.0
68,637 + Synpcc7942_0068 0.65 +0.3
68,637 + Synpcc7942_0068 0.65 -1.0
68,645 - Synpcc7942_0068 0.66 -0.3
68,645 - Synpcc7942_0068 0.66 -1.0
68,645 - Synpcc7942_0068 0.66 -0.4
68,645 - Synpcc7942_0068 0.66 -1.3
68,655 + Synpcc7942_0068 0.67 -0.4
68,663 - Synpcc7942_0068 0.68 -1.0
68,663 - Synpcc7942_0068 0.68 -1.6
68,681 - Synpcc7942_0068 0.70 +1.0
68,685 + Synpcc7942_0068 0.70 +0.6
68,688 - Synpcc7942_0068 0.70 -0.4
68,693 - Synpcc7942_0068 0.71 +1.6
68,693 - Synpcc7942_0068 0.71 +1.6
68,693 - Synpcc7942_0068 0.71 +0.4
68,693 - Synpcc7942_0068 0.71 +0.7
68,731 - Synpcc7942_0068 0.75 -0.0
68,733 - Synpcc7942_0068 0.75 +1.0
68,741 - Synpcc7942_0068 0.76 -2.0
68,744 + Synpcc7942_0068 0.76 -0.3
68,797 - Synpcc7942_0068 0.81 +1.0
68,818 - Synpcc7942_0068 0.84 +0.6
68,822 + -0.0
68,823 - Synpcc7942_0068 0.84 -3.4
68,830 - Synpcc7942_0068 0.85 -2.8
68,830 - Synpcc7942_0068 0.85 -2.0
68,888 + +1.6
68,890 + +0.6
68,896 - -0.0
68,910 + +1.6
68,910 + -2.4
68,915 - -0.0
68,918 - -3.5
68,925 - -1.0
68,952 - +1.6
68,972 + -1.0
68,980 - -0.0
68,985 + -1.1
68,985 - +1.3
68,991 + -0.0
68,996 + +0.6
68,996 + +2.7
68,996 + +1.0
69,001 + -1.0
69,001 + +0.4
69,004 - -0.5
69,004 - -0.6
69,009 - -1.6
69,009 - -0.7
69,014 - -0.8
69,016 + -2.8
69,016 - +0.8
69,080 - -0.4
69,080 - -0.3
69,160 + Synpcc7942_0069 0.27 +0.8
69,160 + Synpcc7942_0069 0.27 -0.0
69,168 - Synpcc7942_0069 0.30 +1.0
69,173 - Synpcc7942_0069 0.32 +2.5
69,179 - Synpcc7942_0069 0.34 +2.2
69,214 + Synpcc7942_0069 0.45 -0.4
69,214 + Synpcc7942_0069 0.45 +1.0
69,217 + -1.6
69,230 - Synpcc7942_0069 0.51 -1.0
69,235 - Synpcc7942_0069 0.53 -0.0
69,253 + Synpcc7942_0069 0.59 +1.0
69,261 - Synpcc7942_0069 0.61 +0.6
69,287 + Synpcc7942_0069 0.70 -1.8
69,287 + Synpcc7942_0069 0.70 +0.8
69,287 + Synpcc7942_0069 0.70 +0.7
69,289 + Synpcc7942_0069 0.71 +0.4
69,292 + Synpcc7942_0069 0.72 -0.0
69,297 + Synpcc7942_0069 0.73 +0.2
69,297 + Synpcc7942_0069 0.73 -1.6
69,297 + Synpcc7942_0069 0.73 -1.5
69,297 + Synpcc7942_0069 0.73 +1.0
69,300 - Synpcc7942_0069 0.74 -2.8
69,305 - Synpcc7942_0069 0.76 +0.7
69,307 - Synpcc7942_0069 0.77 +0.4
69,347 - +2.3
69,370 - -0.2
69,377 - +2.6
69,422 + -0.0
69,422 + +2.0
69,430 - +0.6
69,502 - Synpcc7942_0070 0.22 -0.5
69,502 - Synpcc7942_0070 0.22 -1.0
69,515 + Synpcc7942_0070 0.24 +1.3
69,515 + Synpcc7942_0070 0.24 +2.8
69,551 + Synpcc7942_0070 0.31 +2.3
69,552 + Synpcc7942_0070 0.31 -0.3
69,560 - Synpcc7942_0070 0.32 -0.6
69,562 + Synpcc7942_0070 0.33 +0.5
69,562 + Synpcc7942_0070 0.33 -0.0
69,562 + Synpcc7942_0070 0.33 +1.0
69,562 + Synpcc7942_0070 0.33 +1.6
69,562 + Synpcc7942_0070 0.33 -2.0
69,562 + Synpcc7942_0070 0.33 +0.4
69,570 - Synpcc7942_0070 0.34 +1.4
69,570 - Synpcc7942_0070 0.34 -0.0
69,570 - Synpcc7942_0070 0.34 -0.0
69,570 - Synpcc7942_0070 0.34 -1.0
69,570 - Synpcc7942_0070 0.34 -0.0
69,570 - Synpcc7942_0070 0.34 +2.1
69,574 + Synpcc7942_0070 0.35 +0.8
69,577 + Synpcc7942_0070 0.35 +2.8
69,577 - Synpcc7942_0070 0.35 -1.0
69,582 + Synpcc7942_0070 0.36 -0.0
69,582 - Synpcc7942_0070 0.36 +1.6
69,585 - +1.6
69,645 + Synpcc7942_0070 0.48 +0.6
69,710 - Synpcc7942_0070 0.59 -0.4
69,739 + Synpcc7942_0070 0.64 -2.0
69,779 - Synpcc7942_0070 0.71 -1.3
69,845 - Synpcc7942_0070 0.83 +1.0
69,909 + -0.6
69,909 + +1.8
69,909 + +0.4
69,909 + -0.0
69,917 - +1.0
69,917 - -1.0
69,917 - +1.8
69,929 + +1.0
69,934 + -1.0
69,946 - -0.0

Or see this region's nucleotide sequence