Experiment: Chloramphenicol 0.0006640625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0063 and Synpcc7942_0064 overlap by 4 nucleotides Synpcc7942_0064 and infC are separated by 116 nucleotides infC and Synpcc7942_0066 are separated by 116 nucleotides
Synpcc7942_0063: Synpcc7942_0063 - dual specificity protein phosphatase, at 64,266 to 64,706
_0063
Synpcc7942_0064: Synpcc7942_0064 - hypothetical protein, at 64,703 to 64,870
_0064
Synpcc7942_0065: infC - translation initiation factor IF-3, at 64,987 to 65,541
infC
Synpcc7942_0066: Synpcc7942_0066 - hypothetical protein, at 65,658 to 67,172
_0066
Position (kb) 64
65 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 63.748 kb on + strand at 63.748 kb on + strand at 63.750 kb on - strand at 63.756 kb on - strand at 63.774 kb on + strand at 63.782 kb on - strand at 63.814 kb on + strand at 63.819 kb on - strand at 63.821 kb on - strand at 63.842 kb on + strand at 63.873 kb on - strand at 63.892 kb on + strand at 63.908 kb on + strand at 63.916 kb on - strand at 63.922 kb on - strand at 63.969 kb on - strand at 63.969 kb on - strand at 63.971 kb on + strand at 63.976 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.978 kb on + strand at 63.979 kb on - strand at 63.981 kb on + strand at 63.986 kb on + strand at 63.989 kb on - strand at 63.991 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.994 kb on - strand at 63.996 kb on + strand at 63.996 kb on + strand at 64.004 kb on - strand at 64.004 kb on - strand at 64.010 kb on + strand at 64.018 kb on - strand at 64.025 kb on + strand at 64.038 kb on - strand at 64.079 kb on + strand at 64.085 kb on - strand at 64.087 kb on - strand at 64.106 kb on + strand at 64.160 kb on + strand at 64.168 kb on - strand at 64.168 kb on - strand at 64.171 kb on + strand at 64.179 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.193 kb on - strand at 64.196 kb on + strand at 64.196 kb on + strand at 64.244 kb on - strand at 64.244 kb on - strand at 64.253 kb on + strand at 64.261 kb on - strand at 64.261 kb on - strand at 64.263 kb on + strand at 64.272 kb on - strand at 64.291 kb on + strand at 64.296 kb on - strand at 64.359 kb on + strand, within Synpcc7942_0063 at 64.413 kb on + strand, within Synpcc7942_0063 at 64.421 kb on - strand, within Synpcc7942_0063 at 64.450 kb on + strand, within Synpcc7942_0063 at 64.452 kb on + strand, within Synpcc7942_0063 at 64.458 kb on - strand, within Synpcc7942_0063 at 64.487 kb on - strand, within Synpcc7942_0063 at 64.490 kb on + strand, within Synpcc7942_0063 at 64.501 kb on + strand, within Synpcc7942_0063 at 64.511 kb on + strand, within Synpcc7942_0063 at 64.516 kb on + strand, within Synpcc7942_0063 at 64.524 kb on - strand, within Synpcc7942_0063 at 64.524 kb on - strand, within Synpcc7942_0063 at 64.599 kb on + strand, within Synpcc7942_0063 at 64.599 kb on + strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.607 kb on - strand, within Synpcc7942_0063 at 64.609 kb on + strand, within Synpcc7942_0063 at 64.625 kb on - strand, within Synpcc7942_0063 at 64.710 kb on + strand at 64.722 kb on - strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.724 kb on + strand, within Synpcc7942_0064 at 64.732 kb on - strand, within Synpcc7942_0064 at 64.732 kb on - strand, within Synpcc7942_0064 at 64.734 kb on + strand, within Synpcc7942_0064 at 64.734 kb on - strand, within Synpcc7942_0064 at 64.783 kb on - strand, within Synpcc7942_0064 at 65.691 kb on + strand at 65.700 kb on + strand at 65.708 kb on - strand at 65.731 kb on - strand at 65.761 kb on + strand at 65.847 kb on + strand, within Synpcc7942_0066 at 65.863 kb on + strand, within Synpcc7942_0066
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml remove 63,748 + +0.6 63,748 + +1.0 63,750 - -0.6 63,756 - +1.3 63,774 + -0.6 63,782 - -1.0 63,814 + -0.6 63,819 - +1.1 63,821 - -0.0 63,842 + +0.3 63,873 - +0.6 63,892 + -0.0 63,908 + +1.0 63,916 - +0.4 63,922 - +1.0 63,969 - +1.0 63,969 - +2.0 63,971 + -1.0 63,976 + -0.0 63,978 + +0.6 63,978 + -0.0 63,978 + -0.0 63,979 - -2.3 63,981 + +2.6 63,986 + -1.0 63,989 - +0.8 63,991 - -0.0 63,994 - +4.4 63,994 - -2.6 63,994 - +1.8 63,994 - -0.4 63,996 + +0.5 63,996 + +2.6 64,004 - -0.0 64,004 - -1.0 64,010 + -0.4 64,018 - +1.0 64,025 + +1.3 64,038 - -1.0 64,079 + -0.0 64,085 - -0.4 64,087 - +1.0 64,106 + -2.0 64,160 + +0.7 64,168 - +5.3 64,168 - -0.0 64,171 + -0.4 64,179 - -0.0 64,193 - -0.6 64,193 - +1.0 64,193 - -0.6 64,196 + +0.6 64,196 + -0.0 64,244 - +1.6 64,244 - -0.6 64,253 + +0.6 64,261 - +1.2 64,261 - +0.6 64,263 + +0.7 64,272 - +1.0 64,291 + +0.3 64,296 - -1.0 64,359 + Synpcc7942_0063 0.21 -1.6 64,413 + Synpcc7942_0063 0.33 -1.4 64,421 - Synpcc7942_0063 0.35 -1.6 64,450 + Synpcc7942_0063 0.42 -1.6 64,452 + Synpcc7942_0063 0.42 +1.0 64,458 - Synpcc7942_0063 0.44 -1.6 64,487 - Synpcc7942_0063 0.50 -1.0 64,490 + Synpcc7942_0063 0.51 +0.3 64,501 + Synpcc7942_0063 0.53 -1.6 64,511 + Synpcc7942_0063 0.56 +0.4 64,516 + Synpcc7942_0063 0.57 -1.2 64,524 - Synpcc7942_0063 0.59 +1.0 64,524 - Synpcc7942_0063 0.59 +0.4 64,599 + Synpcc7942_0063 0.76 -0.0 64,599 + Synpcc7942_0063 0.76 -1.0 64,607 - Synpcc7942_0063 0.77 -1.0 64,607 - Synpcc7942_0063 0.77 +2.3 64,607 - Synpcc7942_0063 0.77 +1.0 64,607 - Synpcc7942_0063 0.77 -0.0 64,607 - Synpcc7942_0063 0.77 +0.4 64,609 + Synpcc7942_0063 0.78 +0.7 64,625 - Synpcc7942_0063 0.81 +0.7 64,710 + +1.0 64,722 - Synpcc7942_0064 0.11 +0.8 64,724 + Synpcc7942_0064 0.12 +1.8 64,724 + Synpcc7942_0064 0.12 -0.0 64,724 + Synpcc7942_0064 0.12 +2.9 64,724 + Synpcc7942_0064 0.12 -1.0 64,724 + Synpcc7942_0064 0.12 -1.0 64,732 - Synpcc7942_0064 0.17 -1.0 64,732 - Synpcc7942_0064 0.17 -0.0 64,734 + Synpcc7942_0064 0.18 -0.6 64,734 - Synpcc7942_0064 0.18 +0.2 64,783 - Synpcc7942_0064 0.48 +1.6 65,691 + -1.6 65,700 + -2.4 65,708 - -1.0 65,731 - -2.0 65,761 + +0.4 65,847 + Synpcc7942_0066 0.12 -1.0 65,863 + Synpcc7942_0066 0.14 -2.0
Or see this region's nucleotide sequence