Experiment: Chloramphenicol 0.0006640625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0057 and rfbC overlap by 4 nucleotides rfbC and Synpcc7942_0059 are separated by 20 nucleotides Synpcc7942_0059 and Synpcc7942_0060 overlap by 22 nucleotides Synpcc7942_0060 and rfbG overlap by 4 nucleotides
Synpcc7942_0057: Synpcc7942_0057 - putative C-3 methyl transferase, at 59,072 to 60,304
_0057
Synpcc7942_0058: rfbC - dTDP-4-dehydrorhamnose 3,5-epimerase, at 60,301 to 60,846
rfbC
Synpcc7942_0059: Synpcc7942_0059 - hypothetical protein, at 60,867 to 61,112
_0059
Synpcc7942_0060: Synpcc7942_0060 - hypothetical protein, at 61,091 to 61,369
_0060
Synpcc7942_0061: rfbG - CDP-glucose 4,6-dehydratase, at 61,366 to 62,472
rfbG
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 59.908 kb on - strand, within Synpcc7942_0057 at 59.920 kb on + strand, within Synpcc7942_0057 at 59.928 kb on - strand, within Synpcc7942_0057 at 59.950 kb on + strand, within Synpcc7942_0057 at 59.956 kb on - strand, within Synpcc7942_0057 at 59.958 kb on - strand, within Synpcc7942_0057 at 59.973 kb on - strand, within Synpcc7942_0057 at 60.011 kb on + strand, within Synpcc7942_0057 at 60.017 kb on + strand, within Synpcc7942_0057 at 60.018 kb on - strand, within Synpcc7942_0057 at 60.047 kb on + strand, within Synpcc7942_0057 at 60.066 kb on - strand, within Synpcc7942_0057 at 60.066 kb on - strand, within Synpcc7942_0057 at 60.070 kb on + strand, within Synpcc7942_0057 at 60.071 kb on - strand, within Synpcc7942_0057 at 60.076 kb on - strand, within Synpcc7942_0057 at 60.102 kb on + strand, within Synpcc7942_0057 at 60.102 kb on + strand, within Synpcc7942_0057 at 60.105 kb on + strand, within Synpcc7942_0057 at 60.110 kb on - strand, within Synpcc7942_0057 at 60.140 kb on + strand, within Synpcc7942_0057 at 60.140 kb on + strand, within Synpcc7942_0057 at 60.147 kb on + strand, within Synpcc7942_0057 at 60.147 kb on + strand, within Synpcc7942_0057 at 60.172 kb on - strand, within Synpcc7942_0057 at 60.173 kb on - strand, within Synpcc7942_0057 at 60.174 kb on - strand, within Synpcc7942_0057 at 60.180 kb on + strand, within Synpcc7942_0057 at 60.193 kb on - strand at 60.198 kb on - strand at 60.238 kb on - strand at 60.274 kb on + strand at 60.328 kb on - strand at 60.345 kb on + strand at 60.345 kb on + strand at 60.345 kb on + strand at 60.345 kb on + strand at 60.348 kb on - strand at 60.353 kb on - strand at 60.378 kb on + strand, within rfbC at 60.386 kb on - strand, within rfbC at 60.396 kb on - strand, within rfbC at 60.436 kb on - strand, within rfbC at 60.468 kb on + strand, within rfbC at 60.476 kb on - strand, within rfbC at 60.496 kb on + strand, within rfbC at 60.506 kb on + strand, within rfbC at 60.512 kb on - strand, within rfbC at 60.514 kb on - strand, within rfbC at 60.514 kb on - strand, within rfbC at 60.514 kb on - strand, within rfbC at 60.516 kb on + strand, within rfbC at 60.555 kb on - strand, within rfbC at 60.573 kb on + strand, within rfbC at 60.587 kb on + strand, within rfbC at 60.587 kb on + strand, within rfbC at 60.589 kb on - strand, within rfbC at 60.595 kb on - strand, within rfbC at 60.595 kb on - strand, within rfbC at 60.621 kb on + strand, within rfbC at 60.629 kb on - strand, within rfbC at 60.666 kb on + strand, within rfbC at 60.682 kb on - strand, within rfbC at 60.688 kb on - strand, within rfbC at 60.696 kb on - strand, within rfbC at 60.704 kb on + strand, within rfbC at 60.712 kb on - strand, within rfbC at 60.716 kb on + strand, within rfbC at 60.724 kb on - strand, within rfbC at 60.724 kb on - strand, within rfbC at 60.724 kb on - strand, within rfbC at 60.813 kb on - strand at 60.818 kb on - strand at 60.835 kb on - strand at 60.953 kb on + strand, within Synpcc7942_0059 at 60.961 kb on - strand, within Synpcc7942_0059 at 60.975 kb on - strand, within Synpcc7942_0059 at 60.996 kb on - strand, within Synpcc7942_0059 at 61.050 kb on - strand, within Synpcc7942_0059 at 61.058 kb on - strand, within Synpcc7942_0059 at 61.083 kb on - strand, within Synpcc7942_0059 at 61.119 kb on + strand, within Synpcc7942_0060 at 61.208 kb on - strand, within Synpcc7942_0060 at 61.225 kb on + strand, within Synpcc7942_0060 at 61.270 kb on - strand, within Synpcc7942_0060 at 61.282 kb on + strand, within Synpcc7942_0060 at 61.290 kb on - strand, within Synpcc7942_0060 at 61.295 kb on - strand, within Synpcc7942_0060 at 61.317 kb on + strand, within Synpcc7942_0060 at 61.361 kb on - strand at 61.362 kb on - strand at 61.371 kb on - strand at 61.387 kb on + strand at 61.388 kb on - strand at 61.389 kb on + strand at 61.395 kb on - strand at 61.400 kb on + strand at 61.431 kb on - strand at 61.442 kb on - strand at 61.459 kb on - strand at 61.492 kb on + strand, within rfbG at 61.492 kb on + strand, within rfbG at 61.498 kb on + strand, within rfbG at 61.541 kb on - strand, within rfbG at 61.543 kb on + strand, within rfbG at 61.548 kb on + strand, within rfbG at 61.578 kb on + strand, within rfbG at 61.578 kb on + strand, within rfbG at 61.586 kb on - strand, within rfbG at 61.599 kb on - strand, within rfbG at 61.601 kb on + strand, within rfbG at 61.609 kb on - strand, within rfbG at 61.634 kb on - strand, within rfbG at 61.635 kb on + strand, within rfbG at 61.658 kb on - strand, within rfbG at 61.667 kb on + strand, within rfbG at 61.693 kb on + strand, within rfbG at 61.703 kb on - strand, within rfbG at 61.723 kb on + strand, within rfbG at 61.733 kb on + strand, within rfbG at 61.733 kb on - strand, within rfbG at 61.764 kb on + strand, within rfbG at 61.764 kb on + strand, within rfbG at 61.812 kb on - strand, within rfbG at 61.812 kb on - strand, within rfbG at 61.814 kb on + strand, within rfbG at 61.845 kb on - strand, within rfbG at 61.847 kb on + strand, within rfbG at 61.850 kb on + strand, within rfbG at 61.855 kb on - strand, within rfbG at 61.855 kb on - strand, within rfbG at 61.954 kb on + strand, within rfbG at 61.960 kb on + strand, within rfbG at 61.960 kb on + strand, within rfbG at 61.970 kb on + strand, within rfbG at 61.970 kb on + strand, within rfbG at 61.978 kb on - strand, within rfbG at 61.982 kb on + strand, within rfbG at 61.984 kb on + strand, within rfbG at 61.984 kb on + strand, within rfbG at 61.990 kb on + strand, within rfbG at 61.990 kb on - strand, within rfbG at 61.990 kb on - strand, within rfbG at 61.992 kb on - strand, within rfbG at 62.025 kb on + strand, within rfbG at 62.031 kb on - strand, within rfbG at 62.031 kb on - strand, within rfbG at 62.031 kb on - strand, within rfbG at 62.060 kb on - strand, within rfbG at 62.060 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.086 kb on - strand, within rfbG at 62.096 kb on + strand, within rfbG
Per-strain Table
Position Strand Gene LocusTag Fraction Chloramphenicol 0.0006640625 mg/ml remove 59,908 - Synpcc7942_0057 0.68 -1.0 59,920 + Synpcc7942_0057 0.69 +1.0 59,928 - Synpcc7942_0057 0.69 +1.0 59,950 + Synpcc7942_0057 0.71 +1.2 59,956 - Synpcc7942_0057 0.72 -1.0 59,958 - Synpcc7942_0057 0.72 +1.2 59,973 - Synpcc7942_0057 0.73 -0.0 60,011 + Synpcc7942_0057 0.76 +3.0 60,017 + Synpcc7942_0057 0.77 +0.5 60,018 - Synpcc7942_0057 0.77 +5.0 60,047 + Synpcc7942_0057 0.79 -0.0 60,066 - Synpcc7942_0057 0.81 +0.8 60,066 - Synpcc7942_0057 0.81 -0.0 60,070 + Synpcc7942_0057 0.81 -1.2 60,071 - Synpcc7942_0057 0.81 +0.4 60,076 - Synpcc7942_0057 0.81 -0.6 60,102 + Synpcc7942_0057 0.84 -0.0 60,102 + Synpcc7942_0057 0.84 +1.5 60,105 + Synpcc7942_0057 0.84 +2.6 60,110 - Synpcc7942_0057 0.84 +1.0 60,140 + Synpcc7942_0057 0.87 -0.6 60,140 + Synpcc7942_0057 0.87 -0.0 60,147 + Synpcc7942_0057 0.87 +1.8 60,147 + Synpcc7942_0057 0.87 -0.0 60,172 - Synpcc7942_0057 0.89 -1.0 60,173 - Synpcc7942_0057 0.89 -0.0 60,174 - Synpcc7942_0057 0.89 +1.0 60,180 + Synpcc7942_0057 0.90 +1.8 60,193 - -1.0 60,198 - -0.0 60,238 - -1.0 60,274 + -0.0 60,328 - -0.0 60,345 + -1.6 60,345 + -0.0 60,345 + -0.0 60,345 + +1.0 60,348 - -3.2 60,353 - -0.0 60,378 + rfbC Synpcc7942_0058 0.14 +1.0 60,386 - rfbC Synpcc7942_0058 0.16 +1.0 60,396 - rfbC Synpcc7942_0058 0.17 -0.0 60,436 - rfbC Synpcc7942_0058 0.25 -0.6 60,468 + rfbC Synpcc7942_0058 0.31 -1.6 60,476 - rfbC Synpcc7942_0058 0.32 -0.4 60,496 + rfbC Synpcc7942_0058 0.36 -0.0 60,506 + rfbC Synpcc7942_0058 0.38 +1.0 60,512 - rfbC Synpcc7942_0058 0.39 +0.6 60,514 - rfbC Synpcc7942_0058 0.39 +0.6 60,514 - rfbC Synpcc7942_0058 0.39 -1.0 60,514 - rfbC Synpcc7942_0058 0.39 -0.4 60,516 + rfbC Synpcc7942_0058 0.39 +1.3 60,555 - rfbC Synpcc7942_0058 0.47 +1.0 60,573 + rfbC Synpcc7942_0058 0.50 -0.8 60,587 + rfbC Synpcc7942_0058 0.52 +1.0 60,587 + rfbC Synpcc7942_0058 0.52 +1.0 60,589 - rfbC Synpcc7942_0058 0.53 +1.6 60,595 - rfbC Synpcc7942_0058 0.54 +1.1 60,595 - rfbC Synpcc7942_0058 0.54 -0.6 60,621 + rfbC Synpcc7942_0058 0.59 -0.4 60,629 - rfbC Synpcc7942_0058 0.60 +0.6 60,666 + rfbC Synpcc7942_0058 0.67 -0.0 60,682 - rfbC Synpcc7942_0058 0.70 +1.0 60,688 - rfbC Synpcc7942_0058 0.71 -0.6 60,696 - rfbC Synpcc7942_0058 0.72 +1.6 60,704 + rfbC Synpcc7942_0058 0.74 +1.0 60,712 - rfbC Synpcc7942_0058 0.75 +2.3 60,716 + rfbC Synpcc7942_0058 0.76 +1.8 60,724 - rfbC Synpcc7942_0058 0.77 -0.0 60,724 - rfbC Synpcc7942_0058 0.77 -0.0 60,724 - rfbC Synpcc7942_0058 0.77 -0.6 60,813 - +1.1 60,818 - +1.0 60,835 - -0.3 60,953 + Synpcc7942_0059 0.35 +1.0 60,961 - Synpcc7942_0059 0.38 -1.0 60,975 - Synpcc7942_0059 0.44 -2.0 60,996 - Synpcc7942_0059 0.52 -1.6 61,050 - Synpcc7942_0059 0.74 -0.7 61,058 - Synpcc7942_0059 0.78 -1.6 61,083 - Synpcc7942_0059 0.88 -1.0 61,119 + Synpcc7942_0060 0.10 -0.4 61,208 - Synpcc7942_0060 0.42 -0.6 61,225 + Synpcc7942_0060 0.48 -2.0 61,270 - Synpcc7942_0060 0.64 +1.6 61,282 + Synpcc7942_0060 0.68 -0.0 61,290 - Synpcc7942_0060 0.71 -0.0 61,295 - Synpcc7942_0060 0.73 +2.6 61,317 + Synpcc7942_0060 0.81 +0.6 61,361 - +0.7 61,362 - +0.4 61,371 - -1.0 61,387 + -0.9 61,388 - +0.7 61,389 + -0.9 61,395 - +1.0 61,400 + +0.3 61,431 - +0.3 61,442 - -0.0 61,459 - -0.6 61,492 + rfbG Synpcc7942_0061 0.11 +2.3 61,492 + rfbG Synpcc7942_0061 0.11 -1.4 61,498 + rfbG Synpcc7942_0061 0.12 +1.0 61,541 - rfbG Synpcc7942_0061 0.16 +1.0 61,543 + rfbG Synpcc7942_0061 0.16 -0.0 61,548 + rfbG Synpcc7942_0061 0.16 +2.0 61,578 + rfbG Synpcc7942_0061 0.19 +1.8 61,578 + rfbG Synpcc7942_0061 0.19 -1.0 61,586 - rfbG Synpcc7942_0061 0.20 -1.0 61,599 - rfbG Synpcc7942_0061 0.21 +1.0 61,601 + rfbG Synpcc7942_0061 0.21 -1.5 61,609 - rfbG Synpcc7942_0061 0.22 -1.0 61,634 - rfbG Synpcc7942_0061 0.24 +1.7 61,635 + rfbG Synpcc7942_0061 0.24 -0.0 61,658 - rfbG Synpcc7942_0061 0.26 -1.0 61,667 + rfbG Synpcc7942_0061 0.27 -0.0 61,693 + rfbG Synpcc7942_0061 0.30 +1.6 61,703 - rfbG Synpcc7942_0061 0.30 -0.0 61,723 + rfbG Synpcc7942_0061 0.32 +1.1 61,733 + rfbG Synpcc7942_0061 0.33 -0.0 61,733 - rfbG Synpcc7942_0061 0.33 -0.0 61,764 + rfbG Synpcc7942_0061 0.36 -0.0 61,764 + rfbG Synpcc7942_0061 0.36 +1.0 61,812 - rfbG Synpcc7942_0061 0.40 +2.2 61,812 - rfbG Synpcc7942_0061 0.40 +3.8 61,814 + rfbG Synpcc7942_0061 0.40 +1.6 61,845 - rfbG Synpcc7942_0061 0.43 +1.3 61,847 + rfbG Synpcc7942_0061 0.43 +1.4 61,850 + rfbG Synpcc7942_0061 0.44 +0.8 61,855 - rfbG Synpcc7942_0061 0.44 -1.0 61,855 - rfbG Synpcc7942_0061 0.44 -1.0 61,954 + rfbG Synpcc7942_0061 0.53 -1.0 61,960 + rfbG Synpcc7942_0061 0.54 -0.5 61,960 + rfbG Synpcc7942_0061 0.54 +1.0 61,970 + rfbG Synpcc7942_0061 0.55 -0.6 61,970 + rfbG Synpcc7942_0061 0.55 -3.2 61,978 - rfbG Synpcc7942_0061 0.55 -1.4 61,982 + rfbG Synpcc7942_0061 0.56 +0.4 61,984 + rfbG Synpcc7942_0061 0.56 +1.2 61,984 + rfbG Synpcc7942_0061 0.56 -0.0 61,990 + rfbG Synpcc7942_0061 0.56 +1.6 61,990 - rfbG Synpcc7942_0061 0.56 +0.2 61,990 - rfbG Synpcc7942_0061 0.56 -0.0 61,992 - rfbG Synpcc7942_0061 0.57 +1.0 62,025 + rfbG Synpcc7942_0061 0.60 +0.5 62,031 - rfbG Synpcc7942_0061 0.60 -0.7 62,031 - rfbG Synpcc7942_0061 0.60 -2.8 62,031 - rfbG Synpcc7942_0061 0.60 +1.4 62,060 - rfbG Synpcc7942_0061 0.63 -0.6 62,060 - rfbG Synpcc7942_0061 0.63 +0.2 62,086 - rfbG Synpcc7942_0061 0.65 +1.8 62,086 - rfbG Synpcc7942_0061 0.65 -1.8 62,086 - rfbG Synpcc7942_0061 0.65 -0.5 62,086 - rfbG Synpcc7942_0061 0.65 +0.8 62,096 + rfbG Synpcc7942_0061 0.66 -0.3
Or see this region's nucleotide sequence