Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04307 and SMc04308 are separated by 124 nucleotides SMc04308 and SMc04309 are separated by 92 nucleotides
SMc04307: SMc04307 - adenylate/guanylate cyclase transmembrane protein, at 2,124,064 to 2,126,241
SMc04307
SMc04308: SMc04308 - oxidoreductase, at 2,126,366 to 2,127,181
SMc04308
SMc04309: SMc04309 - cobyric acid synthase, at 2,127,274 to 2,128,728
SMc04309
Position (kb)
2126
2127
2128 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2125.409 kb on + strand, within SMc04307 at 2125.409 kb on + strand, within SMc04307 at 2125.409 kb on + strand, within SMc04307 at 2125.410 kb on - strand, within SMc04307 at 2125.436 kb on + strand, within SMc04307 at 2125.436 kb on + strand, within SMc04307 at 2125.436 kb on + strand, within SMc04307 at 2125.437 kb on - strand, within SMc04307 at 2125.437 kb on - strand, within SMc04307 at 2125.437 kb on - strand, within SMc04307 at 2125.437 kb on - strand, within SMc04307 at 2125.437 kb on - strand, within SMc04307 at 2125.437 kb on - strand, within SMc04307 at 2125.437 kb on - strand, within SMc04307 at 2125.528 kb on + strand, within SMc04307 at 2125.535 kb on + strand, within SMc04307 at 2125.536 kb on - strand, within SMc04307 at 2125.536 kb on - strand, within SMc04307 at 2125.536 kb on - strand, within SMc04307 at 2125.536 kb on - strand, within SMc04307 at 2125.586 kb on + strand, within SMc04307 at 2125.660 kb on + strand, within SMc04307 at 2125.660 kb on + strand, within SMc04307 at 2125.660 kb on + strand, within SMc04307 at 2125.660 kb on + strand, within SMc04307 at 2125.660 kb on + strand, within SMc04307 at 2125.660 kb on + strand, within SMc04307 at 2125.660 kb on + strand, within SMc04307 at 2125.660 kb on + strand, within SMc04307 at 2125.660 kb on + strand, within SMc04307 at 2125.661 kb on - strand, within SMc04307 at 2125.661 kb on - strand, within SMc04307 at 2125.661 kb on - strand, within SMc04307 at 2125.662 kb on + strand, within SMc04307 at 2125.662 kb on + strand, within SMc04307 at 2125.662 kb on + strand, within SMc04307 at 2125.663 kb on - strand, within SMc04307 at 2125.663 kb on - strand, within SMc04307 at 2125.663 kb on - strand, within SMc04307 at 2125.663 kb on - strand, within SMc04307 at 2125.663 kb on - strand, within SMc04307 at 2125.663 kb on - strand, within SMc04307 at 2125.663 kb on - strand, within SMc04307 at 2125.720 kb on - strand, within SMc04307 at 2125.788 kb on - strand, within SMc04307 at 2125.804 kb on - strand, within SMc04307 at 2125.804 kb on - strand, within SMc04307 at 2125.852 kb on + strand, within SMc04307 at 2125.878 kb on + strand, within SMc04307 at 2125.878 kb on + strand, within SMc04307 at 2126.120 kb on + strand at 2126.120 kb on + strand at 2126.224 kb on + strand at 2126.224 kb on + strand at 2126.225 kb on - strand at 2126.225 kb on - strand at 2126.298 kb on + strand at 2126.360 kb on + strand at 2126.360 kb on + strand at 2126.360 kb on + strand at 2126.361 kb on - strand at 2126.361 kb on - strand at 2126.361 kb on - strand at 2126.361 kb on - strand at 2126.361 kb on - strand at 2126.522 kb on + strand, within SMc04308 at 2126.522 kb on + strand, within SMc04308 at 2126.522 kb on + strand, within SMc04308 at 2126.523 kb on - strand, within SMc04308 at 2126.561 kb on + strand, within SMc04308 at 2126.606 kb on - strand, within SMc04308 at 2126.673 kb on + strand, within SMc04308 at 2126.674 kb on - strand, within SMc04308 at 2126.674 kb on - strand, within SMc04308 at 2126.904 kb on + strand, within SMc04308 at 2126.910 kb on + strand, within SMc04308 at 2126.910 kb on + strand, within SMc04308 at 2127.001 kb on - strand, within SMc04308 at 2127.072 kb on + strand, within SMc04308 at 2127.072 kb on + strand, within SMc04308 at 2127.072 kb on + strand, within SMc04308 at 2127.072 kb on + strand, within SMc04308 at 2127.102 kb on + strand at 2127.102 kb on + strand at 2127.103 kb on - strand at 2127.103 kb on - strand at 2127.103 kb on - strand at 2127.103 kb on - strand at 2127.171 kb on + strand at 2127.171 kb on + strand at 2127.171 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 2,125,409 + SMc04307 0.62 -0.1 2,125,409 + SMc04307 0.62 -0.0 2,125,409 + SMc04307 0.62 -0.0 2,125,410 - SMc04307 0.62 +0.9 2,125,436 + SMc04307 0.63 +0.4 2,125,436 + SMc04307 0.63 +0.3 2,125,436 + SMc04307 0.63 +0.1 2,125,437 - SMc04307 0.63 +0.6 2,125,437 - SMc04307 0.63 +0.1 2,125,437 - SMc04307 0.63 +3.7 2,125,437 - SMc04307 0.63 -0.5 2,125,437 - SMc04307 0.63 -2.6 2,125,437 - SMc04307 0.63 +1.6 2,125,437 - SMc04307 0.63 -1.8 2,125,528 + SMc04307 0.67 +0.4 2,125,535 + SMc04307 0.68 +0.2 2,125,536 - SMc04307 0.68 -0.3 2,125,536 - SMc04307 0.68 +0.9 2,125,536 - SMc04307 0.68 +0.5 2,125,536 - SMc04307 0.68 -4.1 2,125,586 + SMc04307 0.70 -1.6 2,125,660 + SMc04307 0.73 -0.2 2,125,660 + SMc04307 0.73 +0.3 2,125,660 + SMc04307 0.73 -0.5 2,125,660 + SMc04307 0.73 +0.1 2,125,660 + SMc04307 0.73 +1.5 2,125,660 + SMc04307 0.73 -0.1 2,125,660 + SMc04307 0.73 +0.3 2,125,660 + SMc04307 0.73 +0.8 2,125,660 + SMc04307 0.73 -0.7 2,125,661 - SMc04307 0.73 -1.1 2,125,661 - SMc04307 0.73 +0.8 2,125,661 - SMc04307 0.73 -0.3 2,125,662 + SMc04307 0.73 +1.4 2,125,662 + SMc04307 0.73 +0.3 2,125,662 + SMc04307 0.73 -0.3 2,125,663 - SMc04307 0.73 -1.5 2,125,663 - SMc04307 0.73 +0.5 2,125,663 - SMc04307 0.73 -2.3 2,125,663 - SMc04307 0.73 -1.9 2,125,663 - SMc04307 0.73 +0.0 2,125,663 - SMc04307 0.73 -0.5 2,125,663 - SMc04307 0.73 +0.4 2,125,720 - SMc04307 0.76 +0.2 2,125,788 - SMc04307 0.79 +0.7 2,125,804 - SMc04307 0.80 -1.4 2,125,804 - SMc04307 0.80 +0.6 2,125,852 + SMc04307 0.82 +0.3 2,125,878 + SMc04307 0.83 -1.7 2,125,878 + SMc04307 0.83 -0.9 2,126,120 + -0.2 2,126,120 + +0.1 2,126,224 + +0.9 2,126,224 + +0.5 2,126,225 - -0.2 2,126,225 - -0.8 2,126,298 + +0.5 2,126,360 + -0.5 2,126,360 + -1.2 2,126,360 + -0.2 2,126,361 - -0.6 2,126,361 - +1.8 2,126,361 - +0.5 2,126,361 - +0.7 2,126,361 - -0.4 2,126,522 + SMc04308 0.19 +1.1 2,126,522 + SMc04308 0.19 -1.7 2,126,522 + SMc04308 0.19 -0.6 2,126,523 - SMc04308 0.19 +0.5 2,126,561 + SMc04308 0.24 +1.5 2,126,606 - SMc04308 0.29 -0.4 2,126,673 + SMc04308 0.38 +0.1 2,126,674 - SMc04308 0.38 -1.7 2,126,674 - SMc04308 0.38 -1.1 2,126,904 + SMc04308 0.66 -1.6 2,126,910 + SMc04308 0.67 -0.4 2,126,910 + SMc04308 0.67 -2.7 2,127,001 - SMc04308 0.78 -0.8 2,127,072 + SMc04308 0.87 -4.1 2,127,072 + SMc04308 0.87 +0.9 2,127,072 + SMc04308 0.87 +1.0 2,127,072 + SMc04308 0.87 +0.6 2,127,102 + +0.4 2,127,102 + -0.5 2,127,103 - -1.6 2,127,103 - +0.8 2,127,103 - -0.1 2,127,103 - +0.5 2,127,171 + +0.1 2,127,171 + -0.4 2,127,171 + +0.3
Or see this region's nucleotide sequence