Strain Fitness in Sinorhizobium meliloti 1021 around SMc02468

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02469 and SMc02468 are separated by 29 nucleotidesSMc02468 and SMc02467 are separated by 219 nucleotidesSMc02467 and SMc02466 are separated by 150 nucleotides SMc02469: SMc02469 - oxidoreductase, at 3,328,092 to 3,329,192 SMc02469 SMc02468: SMc02468 - hypothetical protein, at 3,329,222 to 3,329,863 SMc02468 SMc02467: SMc02467 - peptide methionine sulfoxide reductase, at 3,330,083 to 3,330,679 SMc02467 SMc02466: SMc02466 - succinate dehydrogenase iron-sulfur subunit, at 3,330,830 to 3,331,609 SMc02466 Position (kb) 3329 3330Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3328.363 kb on - strand, within SMc02469at 3328.363 kb on - strand, within SMc02469at 3328.587 kb on + strand, within SMc02469at 3328.588 kb on - strand, within SMc02469at 3328.591 kb on - strand, within SMc02469at 3328.591 kb on - strand, within SMc02469at 3328.630 kb on - strand, within SMc02469at 3328.630 kb on - strand, within SMc02469at 3328.630 kb on - strand, within SMc02469at 3328.630 kb on - strand, within SMc02469at 3328.632 kb on + strand, within SMc02469at 3328.632 kb on + strand, within SMc02469at 3328.632 kb on + strand, within SMc02469at 3328.633 kb on - strand, within SMc02469at 3328.861 kb on - strand, within SMc02469at 3328.861 kb on - strand, within SMc02469at 3328.861 kb on - strand, within SMc02469at 3328.861 kb on - strand, within SMc02469at 3328.919 kb on - strand, within SMc02469at 3328.969 kb on - strand, within SMc02469at 3329.207 kb on + strandat 3329.285 kb on - strandat 3329.285 kb on - strandat 3329.472 kb on - strand, within SMc02468at 3329.642 kb on + strand, within SMc02468at 3329.643 kb on - strand, within SMc02468at 3329.643 kb on - strand, within SMc02468at 3329.645 kb on + strand, within SMc02468at 3329.645 kb on + strand, within SMc02468at 3329.645 kb on + strand, within SMc02468at 3329.645 kb on + strand, within SMc02468at 3329.645 kb on + strand, within SMc02468at 3329.646 kb on - strand, within SMc02468at 3329.646 kb on - strand, within SMc02468at 3329.646 kb on - strand, within SMc02468at 3329.646 kb on - strand, within SMc02468at 3329.646 kb on - strand, within SMc02468at 3329.646 kb on - strand, within SMc02468at 3329.646 kb on - strand, within SMc02468at 3329.774 kb on + strand, within SMc02468at 3329.774 kb on + strand, within SMc02468at 3329.775 kb on - strand, within SMc02468at 3330.103 kb on - strandat 3330.162 kb on + strand, within SMc02467at 3330.162 kb on + strand, within SMc02467at 3330.163 kb on - strand, within SMc02467at 3330.204 kb on + strand, within SMc02467at 3330.204 kb on + strand, within SMc02467at 3330.204 kb on + strand, within SMc02467at 3330.205 kb on - strand, within SMc02467at 3330.205 kb on - strand, within SMc02467at 3330.249 kb on - strand, within SMc02467at 3330.249 kb on - strand, within SMc02467at 3330.340 kb on + strand, within SMc02467at 3330.340 kb on + strand, within SMc02467at 3330.340 kb on + strand, within SMc02467at 3330.341 kb on - strand, within SMc02467at 3330.424 kb on - strand, within SMc02467at 3330.492 kb on + strand, within SMc02467at 3330.492 kb on + strand, within SMc02467at 3330.492 kb on + strand, within SMc02467at 3330.493 kb on - strand, within SMc02467at 3330.493 kb on - strand, within SMc02467at 3330.601 kb on + strand, within SMc02467at 3330.602 kb on - strand, within SMc02467at 3330.606 kb on + strand, within SMc02467at 3330.607 kb on - strand, within SMc02467at 3330.607 kb on - strand, within SMc02467at 3330.607 kb on - strand, within SMc02467at 3330.701 kb on + strandat 3330.705 kb on - strandat 3330.709 kb on - strandat 3330.709 kb on - strandat 3330.709 kb on - strandat 3330.709 kb on - strandat 3330.739 kb on - strandat 3330.739 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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3,328,363 - SMc02469 0.25 +0.4
3,328,363 - SMc02469 0.25 -1.4
3,328,587 + SMc02469 0.45 -0.6
3,328,588 - SMc02469 0.45 +0.3
3,328,591 - SMc02469 0.45 +0.4
3,328,591 - SMc02469 0.45 +1.5
3,328,630 - SMc02469 0.49 -0.1
3,328,630 - SMc02469 0.49 +0.2
3,328,630 - SMc02469 0.49 +1.0
3,328,630 - SMc02469 0.49 -0.0
3,328,632 + SMc02469 0.49 -0.4
3,328,632 + SMc02469 0.49 -0.1
3,328,632 + SMc02469 0.49 -0.0
3,328,633 - SMc02469 0.49 -2.2
3,328,861 - SMc02469 0.70 -0.4
3,328,861 - SMc02469 0.70 +0.0
3,328,861 - SMc02469 0.70 -0.7
3,328,861 - SMc02469 0.70 -0.2
3,328,919 - SMc02469 0.75 -0.4
3,328,969 - SMc02469 0.80 -1.5
3,329,207 + -0.8
3,329,285 - +0.3
3,329,285 - +1.0
3,329,472 - SMc02468 0.39 +0.3
3,329,642 + SMc02468 0.65 -0.2
3,329,643 - SMc02468 0.66 -1.1
3,329,643 - SMc02468 0.66 -0.5
3,329,645 + SMc02468 0.66 -1.7
3,329,645 + SMc02468 0.66 +0.5
3,329,645 + SMc02468 0.66 -0.4
3,329,645 + SMc02468 0.66 -0.3
3,329,645 + SMc02468 0.66 -1.1
3,329,646 - SMc02468 0.66 -0.9
3,329,646 - SMc02468 0.66 -2.2
3,329,646 - SMc02468 0.66 +0.0
3,329,646 - SMc02468 0.66 -1.4
3,329,646 - SMc02468 0.66 -0.4
3,329,646 - SMc02468 0.66 +0.3
3,329,646 - SMc02468 0.66 -1.7
3,329,774 + SMc02468 0.86 +0.2
3,329,774 + SMc02468 0.86 +4.0
3,329,775 - SMc02468 0.86 -1.5
3,330,103 - +1.2
3,330,162 + SMc02467 0.13 +0.8
3,330,162 + SMc02467 0.13 +0.9
3,330,163 - SMc02467 0.13 -0.7
3,330,204 + SMc02467 0.20 +0.5
3,330,204 + SMc02467 0.20 -2.2
3,330,204 + SMc02467 0.20 +1.1
3,330,205 - SMc02467 0.20 -3.0
3,330,205 - SMc02467 0.20 -0.7
3,330,249 - SMc02467 0.28 -0.2
3,330,249 - SMc02467 0.28 -1.1
3,330,340 + SMc02467 0.43 +1.4
3,330,340 + SMc02467 0.43 +0.4
3,330,340 + SMc02467 0.43 -0.1
3,330,341 - SMc02467 0.43 -0.5
3,330,424 - SMc02467 0.57 -1.9
3,330,492 + SMc02467 0.69 -2.7
3,330,492 + SMc02467 0.69 -0.9
3,330,492 + SMc02467 0.69 -2.7
3,330,493 - SMc02467 0.69 +0.1
3,330,493 - SMc02467 0.69 -0.3
3,330,601 + SMc02467 0.87 +1.5
3,330,602 - SMc02467 0.87 -0.5
3,330,606 + SMc02467 0.88 +2.4
3,330,607 - SMc02467 0.88 +2.7
3,330,607 - SMc02467 0.88 -0.0
3,330,607 - SMc02467 0.88 +1.5
3,330,701 + +1.0
3,330,705 - +3.1
3,330,709 - -1.0
3,330,709 - -0.1
3,330,709 - +1.6
3,330,709 - +2.2
3,330,739 - +0.2
3,330,739 - -3.2

Or see this region's nucleotide sequence