Strain Fitness in Sinorhizobium meliloti 1021 around SMc01824

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01822 and SMc01823 are separated by 151 nucleotidesSMc01823 and SMc01824 overlap by 11 nucleotidesSMc01824 and SMc01825 are separated by 2 nucleotidesSMc01825 and SMc01826 overlap by 4 nucleotides SMc01822: SMc01822 - hypothetical protein, at 2,646,604 to 2,646,987 SMc01822 SMc01823: SMc01823 - ABC transporter ATP-binding protein, at 2,647,139 to 2,647,930 SMc01823 SMc01824: SMc01824 - hypothetical protein, at 2,647,920 to 2,648,405 SMc01824 SMc01825: SMc01825 - ABC transporter permease, at 2,648,408 to 2,649,292 SMc01825 SMc01826: SMc01826 - ABC transporter permease, at 2,649,289 to 2,650,158 SMc01826 Position (kb) 2647 2648 2649Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2646.931 kb on - strand, within SMc01822at 2647.033 kb on + strandat 2647.222 kb on + strand, within SMc01823at 2647.223 kb on - strand, within SMc01823at 2647.223 kb on - strand, within SMc01823at 2647.223 kb on - strand, within SMc01823at 2647.391 kb on + strand, within SMc01823at 2647.397 kb on + strand, within SMc01823at 2647.398 kb on - strand, within SMc01823at 2647.398 kb on - strand, within SMc01823at 2647.398 kb on - strand, within SMc01823at 2647.398 kb on - strand, within SMc01823at 2647.919 kb on + strandat 2647.991 kb on + strand, within SMc01824at 2648.008 kb on + strand, within SMc01824at 2648.008 kb on + strand, within SMc01824at 2648.064 kb on + strand, within SMc01824at 2648.292 kb on + strand, within SMc01824at 2648.293 kb on - strand, within SMc01824at 2648.293 kb on - strand, within SMc01824at 2648.364 kb on + strandat 2648.365 kb on - strandat 2648.483 kb on + strandat 2648.484 kb on - strandat 2648.681 kb on + strand, within SMc01825at 2648.682 kb on - strand, within SMc01825at 2648.682 kb on - strand, within SMc01825at 2648.824 kb on - strand, within SMc01825at 2648.912 kb on + strand, within SMc01825at 2648.913 kb on - strand, within SMc01825at 2648.996 kb on + strand, within SMc01825at 2648.996 kb on + strand, within SMc01825at 2648.997 kb on - strand, within SMc01825at 2648.997 kb on - strand, within SMc01825at 2649.053 kb on + strand, within SMc01825at 2649.167 kb on + strand, within SMc01825at 2649.168 kb on - strand, within SMc01825at 2649.183 kb on + strand, within SMc01825at 2649.183 kb on + strand, within SMc01825at 2649.256 kb on + strandat 2649.257 kb on - strandat 2649.257 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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2,646,931 - SMc01822 0.85 -1.0
2,647,033 + +0.5
2,647,222 + SMc01823 0.10 -1.2
2,647,223 - SMc01823 0.11 -1.8
2,647,223 - SMc01823 0.11 -1.6
2,647,223 - SMc01823 0.11 -2.1
2,647,391 + SMc01823 0.32 -0.2
2,647,397 + SMc01823 0.33 +0.1
2,647,398 - SMc01823 0.33 +0.5
2,647,398 - SMc01823 0.33 +2.5
2,647,398 - SMc01823 0.33 -0.7
2,647,398 - SMc01823 0.33 -0.2
2,647,919 + +0.7
2,647,991 + SMc01824 0.15 -0.0
2,648,008 + SMc01824 0.18 -0.4
2,648,008 + SMc01824 0.18 +0.3
2,648,064 + SMc01824 0.30 +0.3
2,648,292 + SMc01824 0.77 +0.3
2,648,293 - SMc01824 0.77 +1.7
2,648,293 - SMc01824 0.77 +0.1
2,648,364 + +0.8
2,648,365 - +1.4
2,648,483 + +0.6
2,648,484 - -1.2
2,648,681 + SMc01825 0.31 -3.0
2,648,682 - SMc01825 0.31 -1.7
2,648,682 - SMc01825 0.31 -0.9
2,648,824 - SMc01825 0.47 -0.7
2,648,912 + SMc01825 0.57 +0.4
2,648,913 - SMc01825 0.57 -1.5
2,648,996 + SMc01825 0.66 -1.3
2,648,996 + SMc01825 0.66 +0.2
2,648,997 - SMc01825 0.67 +1.0
2,648,997 - SMc01825 0.67 -0.8
2,649,053 + SMc01825 0.73 -1.0
2,649,167 + SMc01825 0.86 +0.2
2,649,168 - SMc01825 0.86 -0.5
2,649,183 + SMc01825 0.88 -0.5
2,649,183 + SMc01825 0.88 -0.7
2,649,256 + +0.3
2,649,257 - +0.0
2,649,257 - +0.3

Or see this region's nucleotide sequence