Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01648 and SMc01649 are separated by 140 nucleotides SMc01649 and SMc01650 are separated by 7 nucleotides SMc01650 and SMc01651 are separated by 119 nucleotides
SMc01648: SMc01648 - hypothetical protein, at 2,444,583 to 2,446,580
SMc01648
SMc01649: SMc01649 - hypothetical protein, at 2,446,721 to 2,447,125
SMc01649
SMc01650: SMc01650 - esterase/lipase, at 2,447,133 to 2,448,056
SMc01650
SMc01651: SMc01651 - transcriptional regulator, at 2,448,176 to 2,449,084
SMc01651
Position (kb)
2447
2448
2449 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 2446.215 kb on + strand, within SMc01648 at 2446.215 kb on + strand, within SMc01648 at 2446.216 kb on - strand, within SMc01648 at 2446.217 kb on + strand, within SMc01648 at 2446.217 kb on + strand, within SMc01648 at 2446.302 kb on - strand, within SMc01648 at 2446.669 kb on + strand at 2446.670 kb on - strand at 2446.693 kb on + strand at 2446.875 kb on - strand, within SMc01649 at 2446.906 kb on + strand, within SMc01649 at 2446.907 kb on - strand, within SMc01649 at 2446.907 kb on - strand, within SMc01649 at 2446.907 kb on - strand, within SMc01649 at 2446.975 kb on + strand, within SMc01649 at 2446.976 kb on - strand, within SMc01649 at 2446.976 kb on - strand, within SMc01649 at 2446.976 kb on - strand, within SMc01649 at 2446.976 kb on - strand, within SMc01649 at 2447.052 kb on + strand, within SMc01649 at 2447.052 kb on + strand, within SMc01649 at 2447.053 kb on - strand, within SMc01649 at 2447.058 kb on + strand, within SMc01649 at 2447.059 kb on - strand, within SMc01649 at 2447.059 kb on - strand, within SMc01649 at 2447.059 kb on - strand, within SMc01649 at 2447.251 kb on + strand, within SMc01650 at 2447.252 kb on - strand, within SMc01650 at 2447.291 kb on - strand, within SMc01650 at 2447.323 kb on + strand, within SMc01650 at 2447.338 kb on + strand, within SMc01650 at 2447.473 kb on + strand, within SMc01650 at 2447.474 kb on - strand, within SMc01650 at 2447.474 kb on - strand, within SMc01650 at 2447.474 kb on - strand, within SMc01650 at 2447.474 kb on - strand, within SMc01650 at 2447.474 kb on - strand, within SMc01650 at 2447.509 kb on + strand, within SMc01650 at 2447.509 kb on + strand, within SMc01650 at 2447.563 kb on - strand, within SMc01650 at 2447.595 kb on - strand, within SMc01650 at 2447.798 kb on + strand, within SMc01650 at 2447.799 kb on - strand, within SMc01650 at 2447.799 kb on - strand, within SMc01650 at 2447.800 kb on + strand, within SMc01650 at 2447.800 kb on + strand, within SMc01650 at 2447.842 kb on + strand, within SMc01650 at 2447.932 kb on + strand, within SMc01650 at 2447.933 kb on - strand, within SMc01650 at 2447.933 kb on - strand, within SMc01650 at 2447.933 kb on - strand, within SMc01650 at 2447.933 kb on - strand, within SMc01650 at 2447.933 kb on - strand, within SMc01650 at 2447.980 kb on + strand at 2447.980 kb on + strand at 2448.080 kb on - strand at 2448.166 kb on + strand at 2448.204 kb on - strand at 2448.793 kb on + strand, within SMc01651 at 2448.793 kb on + strand, within SMc01651
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 2,446,215 + SMc01648 0.82 -0.0 2,446,215 + SMc01648 0.82 +0.2 2,446,216 - SMc01648 0.82 +0.2 2,446,217 + SMc01648 0.82 +0.3 2,446,217 + SMc01648 0.82 +5.2 2,446,302 - SMc01648 0.86 +0.8 2,446,669 + +0.1 2,446,670 - -0.2 2,446,693 + -1.5 2,446,875 - SMc01649 0.38 -0.8 2,446,906 + SMc01649 0.46 +0.0 2,446,907 - SMc01649 0.46 +0.4 2,446,907 - SMc01649 0.46 -0.0 2,446,907 - SMc01649 0.46 +1.2 2,446,975 + SMc01649 0.63 -0.9 2,446,976 - SMc01649 0.63 +0.1 2,446,976 - SMc01649 0.63 +0.6 2,446,976 - SMc01649 0.63 +1.6 2,446,976 - SMc01649 0.63 -0.1 2,447,052 + SMc01649 0.82 +2.0 2,447,052 + SMc01649 0.82 -0.5 2,447,053 - SMc01649 0.82 -0.1 2,447,058 + SMc01649 0.83 +2.0 2,447,059 - SMc01649 0.83 -0.7 2,447,059 - SMc01649 0.83 +0.2 2,447,059 - SMc01649 0.83 -0.7 2,447,251 + SMc01650 0.13 -0.3 2,447,252 - SMc01650 0.13 +1.9 2,447,291 - SMc01650 0.17 -2.9 2,447,323 + SMc01650 0.21 +2.0 2,447,338 + SMc01650 0.22 +2.0 2,447,473 + SMc01650 0.37 -0.1 2,447,474 - SMc01650 0.37 -0.8 2,447,474 - SMc01650 0.37 -0.4 2,447,474 - SMc01650 0.37 +0.4 2,447,474 - SMc01650 0.37 -0.0 2,447,474 - SMc01650 0.37 +0.5 2,447,509 + SMc01650 0.41 -2.8 2,447,509 + SMc01650 0.41 -3.3 2,447,563 - SMc01650 0.47 -0.9 2,447,595 - SMc01650 0.50 +2.0 2,447,798 + SMc01650 0.72 +0.3 2,447,799 - SMc01650 0.72 +0.9 2,447,799 - SMc01650 0.72 +0.9 2,447,800 + SMc01650 0.72 -0.4 2,447,800 + SMc01650 0.72 +0.6 2,447,842 + SMc01650 0.77 +0.7 2,447,932 + SMc01650 0.86 +1.8 2,447,933 - SMc01650 0.87 +0.3 2,447,933 - SMc01650 0.87 -1.1 2,447,933 - SMc01650 0.87 +0.5 2,447,933 - SMc01650 0.87 -0.1 2,447,933 - SMc01650 0.87 -1.9 2,447,980 + +0.8 2,447,980 + -2.3 2,448,080 - +0.2 2,448,166 + +0.5 2,448,204 - -2.0 2,448,793 + SMc01651 0.68 -1.5 2,448,793 + SMc01651 0.68 +0.1
Or see this region's nucleotide sequence