Strain Fitness in Sinorhizobium meliloti 1021 around SMc01639

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01638 and SMc01639 are separated by 251 nucleotidesSMc01639 and SMc01640 are separated by 194 nucleotides SMc01638: SMc01638 - bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase, at 2,430,531 to 2,432,021 SMc01638 SMc01639: SMc01639 - acyl-CoA dehydrogenase, at 2,432,273 to 2,433,433 SMc01639 SMc01640: SMc01640 - acyl-COA synthetase, at 2,433,628 to 2,435,691 SMc01640 Position (kb) 2432 2433 2434Strain fitness (log2 ratio) -2 -1 0 1 2at 2431.606 kb on - strand, within SMc01638at 2431.716 kb on + strand, within SMc01638at 2431.716 kb on + strand, within SMc01638at 2431.716 kb on + strand, within SMc01638at 2431.716 kb on + strand, within SMc01638at 2431.719 kb on + strand, within SMc01638at 2431.719 kb on + strand, within SMc01638at 2431.720 kb on - strand, within SMc01638at 2431.777 kb on - strand, within SMc01638at 2431.778 kb on + strand, within SMc01638at 2431.779 kb on - strand, within SMc01638at 2431.779 kb on - strand, within SMc01638at 2431.779 kb on - strand, within SMc01638at 2432.006 kb on - strandat 2432.006 kb on - strandat 2432.097 kb on - strandat 2432.122 kb on + strandat 2432.123 kb on - strandat 2432.123 kb on - strandat 2432.136 kb on + strandat 2432.166 kb on - strandat 2432.346 kb on - strandat 2432.346 kb on - strandat 2432.752 kb on + strand, within SMc01639at 2432.753 kb on - strand, within SMc01639at 2432.876 kb on + strand, within SMc01639at 2432.900 kb on + strand, within SMc01639at 2432.968 kb on + strand, within SMc01639at 2432.968 kb on + strand, within SMc01639at 2432.969 kb on - strand, within SMc01639at 2432.999 kb on + strand, within SMc01639at 2432.999 kb on + strand, within SMc01639at 2433.000 kb on - strand, within SMc01639at 2433.060 kb on - strand, within SMc01639at 2433.293 kb on + strand, within SMc01639at 2433.294 kb on - strand, within SMc01639at 2433.451 kb on + strandat 2433.917 kb on - strand, within SMc01640at 2434.125 kb on + strand, within SMc01640at 2434.137 kb on + strand, within SMc01640at 2434.137 kb on + strand, within SMc01640at 2434.137 kb on + strand, within SMc01640at 2434.138 kb on - strand, within SMc01640at 2434.171 kb on + strand, within SMc01640at 2434.171 kb on + strand, within SMc01640at 2434.171 kb on + strand, within SMc01640at 2434.172 kb on - strand, within SMc01640at 2434.172 kb on - strand, within SMc01640at 2434.172 kb on - strand, within SMc01640

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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2,431,606 - SMc01638 0.72 -1.7
2,431,716 + SMc01638 0.79 +0.4
2,431,716 + SMc01638 0.79 -1.0
2,431,716 + SMc01638 0.79 -0.6
2,431,716 + SMc01638 0.79 -0.3
2,431,719 + SMc01638 0.80 -2.2
2,431,719 + SMc01638 0.80 -0.3
2,431,720 - SMc01638 0.80 +1.7
2,431,777 - SMc01638 0.84 -2.3
2,431,778 + SMc01638 0.84 +0.1
2,431,779 - SMc01638 0.84 +0.0
2,431,779 - SMc01638 0.84 -1.7
2,431,779 - SMc01638 0.84 +0.1
2,432,006 - -0.4
2,432,006 - -0.3
2,432,097 - +1.4
2,432,122 + -0.6
2,432,123 - -0.6
2,432,123 - +1.9
2,432,136 + -1.6
2,432,166 - -1.1
2,432,346 - +0.4
2,432,346 - +1.6
2,432,752 + SMc01639 0.41 +0.5
2,432,753 - SMc01639 0.41 +0.7
2,432,876 + SMc01639 0.52 -1.0
2,432,900 + SMc01639 0.54 +0.6
2,432,968 + SMc01639 0.60 +0.1
2,432,968 + SMc01639 0.60 +1.0
2,432,969 - SMc01639 0.60 +1.1
2,432,999 + SMc01639 0.63 +0.2
2,432,999 + SMc01639 0.63 +0.4
2,433,000 - SMc01639 0.63 -0.2
2,433,060 - SMc01639 0.68 +0.0
2,433,293 + SMc01639 0.88 -0.5
2,433,294 - SMc01639 0.88 +2.0
2,433,451 + -0.7
2,433,917 - SMc01640 0.14 -1.1
2,434,125 + SMc01640 0.24 -1.3
2,434,137 + SMc01640 0.25 -0.5
2,434,137 + SMc01640 0.25 -0.5
2,434,137 + SMc01640 0.25 +0.4
2,434,138 - SMc01640 0.25 -0.2
2,434,171 + SMc01640 0.26 -1.1
2,434,171 + SMc01640 0.26 -0.5
2,434,171 + SMc01640 0.26 -2.3
2,434,172 - SMc01640 0.26 +0.2
2,434,172 - SMc01640 0.26 +1.8
2,434,172 - SMc01640 0.26 +1.4

Or see this region's nucleotide sequence