Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01555 and SMc01596 are separated by 149 nucleotides SMc01596 and SMc01556 are separated by 145 nucleotides
SMc01555: SMc01555 - hypothetical protein, at 2,496,744 to 2,497,055
SMc01555
SMc01596: SMc01596 - tRNA-Met, at 2,497,205 to 2,497,280
SMc01596
SMc01556: SMc01556 - hypothetical protein, at 2,497,426 to 2,498,214
SMc01556
Position (kb)
2497
2498 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2496.206 kb on + strand at 2496.209 kb on + strand at 2496.209 kb on + strand at 2496.210 kb on - strand at 2496.232 kb on + strand at 2496.240 kb on + strand at 2496.241 kb on - strand at 2496.253 kb on + strand at 2496.253 kb on + strand at 2496.253 kb on + strand at 2496.254 kb on - strand at 2496.414 kb on - strand at 2496.500 kb on + strand at 2496.501 kb on - strand at 2496.521 kb on + strand at 2496.569 kb on + strand at 2496.570 kb on - strand at 2496.584 kb on + strand at 2496.585 kb on - strand at 2496.654 kb on + strand at 2496.717 kb on + strand at 2496.718 kb on - strand at 2496.718 kb on - strand at 2496.722 kb on + strand at 2496.723 kb on - strand at 2496.723 kb on - strand at 2496.723 kb on - strand at 2496.733 kb on + strand at 2496.733 kb on + strand at 2496.734 kb on - strand at 2496.745 kb on + strand at 2496.745 kb on + strand at 2496.745 kb on + strand at 2497.111 kb on - strand at 2497.192 kb on + strand at 2497.193 kb on - strand at 2497.370 kb on + strand at 2497.374 kb on + strand at 2497.385 kb on + strand at 2497.783 kb on + strand, within SMc01556 at 2497.784 kb on - strand, within SMc01556 at 2497.790 kb on - strand, within SMc01556 at 2498.174 kb on - strand at 2498.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 2,496,206 + +0.2 2,496,209 + -2.3 2,496,209 + +0.1 2,496,210 - +0.8 2,496,232 + -0.1 2,496,240 + +0.6 2,496,241 - +2.5 2,496,253 + -1.1 2,496,253 + +0.6 2,496,253 + -0.4 2,496,254 - +0.3 2,496,414 - -0.2 2,496,500 + -0.1 2,496,501 - +0.2 2,496,521 + -0.2 2,496,569 + -0.4 2,496,570 - +0.6 2,496,584 + -0.3 2,496,585 - +1.0 2,496,654 + +0.5 2,496,717 + +0.6 2,496,718 - +2.1 2,496,718 - -1.7 2,496,722 + -0.0 2,496,723 - +3.3 2,496,723 - +0.3 2,496,723 - -0.3 2,496,733 + +0.1 2,496,733 + +0.5 2,496,734 - +0.3 2,496,745 + +1.5 2,496,745 + +0.2 2,496,745 + -0.2 2,497,111 - -1.1 2,497,192 + -2.2 2,497,193 - -0.2 2,497,370 + -2.6 2,497,374 + +0.4 2,497,385 + -1.4 2,497,783 + SMc01556 0.45 -1.3 2,497,784 - SMc01556 0.45 -1.2 2,497,790 - SMc01556 0.46 -3.6 2,498,174 - -2.6 2,498,174 - -0.7
Or see this region's nucleotide sequence