Strain Fitness in Sinorhizobium meliloti 1021 around SMc01414

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01492 and SMc01414 are separated by 233 nucleotidesSMc01414 and SMc01415 are separated by 145 nucleotides SMc01492: SMc01492 - hypothetical protein, at 2,261,213 to 2,263,114 SMc01492 SMc01414: SMc01414 - hypothetical protein, at 2,263,348 to 2,264,580 SMc01414 SMc01415: SMc01415 - transmembrane protein, at 2,264,726 to 2,265,814 SMc01415 Position (kb) 2263 2264 2265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2262.563 kb on + strand, within SMc01492at 2262.564 kb on - strand, within SMc01492at 2262.819 kb on - strand, within SMc01492at 2262.860 kb on + strand, within SMc01492at 2262.891 kb on - strand, within SMc01492at 2262.912 kb on - strand, within SMc01492at 2262.923 kb on + strand, within SMc01492at 2262.923 kb on + strand, within SMc01492at 2262.962 kb on + strandat 2262.962 kb on + strandat 2263.098 kb on + strandat 2263.098 kb on + strandat 2263.098 kb on + strandat 2263.099 kb on - strandat 2263.099 kb on - strandat 2263.099 kb on - strandat 2263.110 kb on - strandat 2263.110 kb on - strandat 2263.394 kb on + strandat 2263.395 kb on - strandat 2263.414 kb on - strandat 2263.515 kb on - strand, within SMc01414at 2263.723 kb on + strand, within SMc01414at 2263.723 kb on + strand, within SMc01414at 2263.723 kb on + strand, within SMc01414at 2263.724 kb on - strand, within SMc01414at 2263.759 kb on - strand, within SMc01414at 2263.791 kb on - strand, within SMc01414at 2263.945 kb on - strand, within SMc01414at 2264.009 kb on + strand, within SMc01414at 2264.009 kb on + strand, within SMc01414at 2264.010 kb on - strand, within SMc01414at 2264.237 kb on + strand, within SMc01414at 2264.238 kb on - strand, within SMc01414at 2264.385 kb on - strand, within SMc01414at 2264.558 kb on - strandat 2264.686 kb on - strandat 2264.686 kb on - strandat 2265.180 kb on - strand, within SMc01415at 2265.215 kb on + strand, within SMc01415at 2265.215 kb on + strand, within SMc01415at 2265.216 kb on - strand, within SMc01415at 2265.216 kb on - strand, within SMc01415at 2265.216 kb on - strand, within SMc01415at 2265.378 kb on + strand, within SMc01415at 2265.378 kb on + strand, within SMc01415at 2265.379 kb on - strand, within SMc01415at 2265.379 kb on - strand, within SMc01415at 2265.509 kb on - strand, within SMc01415

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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2,262,563 + SMc01492 0.71 -0.1
2,262,564 - SMc01492 0.71 +0.8
2,262,819 - SMc01492 0.84 -3.6
2,262,860 + SMc01492 0.87 +1.3
2,262,891 - SMc01492 0.88 -2.8
2,262,912 - SMc01492 0.89 -0.9
2,262,923 + SMc01492 0.90 +0.1
2,262,923 + SMc01492 0.90 +0.6
2,262,962 + -0.3
2,262,962 + -0.5
2,263,098 + -0.6
2,263,098 + +2.0
2,263,098 + +0.5
2,263,099 - +0.8
2,263,099 - -0.8
2,263,099 - -1.2
2,263,110 - +1.2
2,263,110 - -2.2
2,263,394 + -0.7
2,263,395 - -0.5
2,263,414 - -0.3
2,263,515 - SMc01414 0.14 +0.1
2,263,723 + SMc01414 0.30 -0.6
2,263,723 + SMc01414 0.30 -1.7
2,263,723 + SMc01414 0.30 -0.4
2,263,724 - SMc01414 0.30 -0.8
2,263,759 - SMc01414 0.33 -0.5
2,263,791 - SMc01414 0.36 -2.4
2,263,945 - SMc01414 0.48 -2.4
2,264,009 + SMc01414 0.54 -2.6
2,264,009 + SMc01414 0.54 -0.9
2,264,010 - SMc01414 0.54 +0.2
2,264,237 + SMc01414 0.72 -2.3
2,264,238 - SMc01414 0.72 +0.8
2,264,385 - SMc01414 0.84 +0.5
2,264,558 - -0.2
2,264,686 - -3.2
2,264,686 - -0.7
2,265,180 - SMc01415 0.42 +0.5
2,265,215 + SMc01415 0.45 +1.1
2,265,215 + SMc01415 0.45 +0.5
2,265,216 - SMc01415 0.45 -2.5
2,265,216 - SMc01415 0.45 +0.8
2,265,216 - SMc01415 0.45 -0.3
2,265,378 + SMc01415 0.60 +0.1
2,265,378 + SMc01415 0.60 -0.7
2,265,379 - SMc01415 0.60 -0.2
2,265,379 - SMc01415 0.60 +3.0
2,265,509 - SMc01415 0.72 +0.6

Or see this region's nucleotide sequence