Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01492 and SMc01414 are separated by 233 nucleotides SMc01414 and SMc01415 are separated by 145 nucleotides
SMc01492: SMc01492 - hypothetical protein, at 2,261,213 to 2,263,114
SMc01492
SMc01414: SMc01414 - hypothetical protein, at 2,263,348 to 2,264,580
SMc01414
SMc01415: SMc01415 - transmembrane protein, at 2,264,726 to 2,265,814
SMc01415
Position (kb)
2263
2264
2265 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2262.563 kb on + strand, within SMc01492 at 2262.564 kb on - strand, within SMc01492 at 2262.819 kb on - strand, within SMc01492 at 2262.860 kb on + strand, within SMc01492 at 2262.891 kb on - strand, within SMc01492 at 2262.912 kb on - strand, within SMc01492 at 2262.923 kb on + strand, within SMc01492 at 2262.923 kb on + strand, within SMc01492 at 2262.962 kb on + strand at 2262.962 kb on + strand at 2263.098 kb on + strand at 2263.098 kb on + strand at 2263.098 kb on + strand at 2263.099 kb on - strand at 2263.099 kb on - strand at 2263.099 kb on - strand at 2263.110 kb on - strand at 2263.110 kb on - strand at 2263.394 kb on + strand at 2263.395 kb on - strand at 2263.414 kb on - strand at 2263.515 kb on - strand, within SMc01414 at 2263.723 kb on + strand, within SMc01414 at 2263.723 kb on + strand, within SMc01414 at 2263.723 kb on + strand, within SMc01414 at 2263.724 kb on - strand, within SMc01414 at 2263.759 kb on - strand, within SMc01414 at 2263.791 kb on - strand, within SMc01414 at 2263.945 kb on - strand, within SMc01414 at 2264.009 kb on + strand, within SMc01414 at 2264.009 kb on + strand, within SMc01414 at 2264.010 kb on - strand, within SMc01414 at 2264.237 kb on + strand, within SMc01414 at 2264.238 kb on - strand, within SMc01414 at 2264.385 kb on - strand, within SMc01414 at 2264.558 kb on - strand at 2264.686 kb on - strand at 2264.686 kb on - strand at 2265.180 kb on - strand, within SMc01415 at 2265.215 kb on + strand, within SMc01415 at 2265.215 kb on + strand, within SMc01415 at 2265.216 kb on - strand, within SMc01415 at 2265.216 kb on - strand, within SMc01415 at 2265.216 kb on - strand, within SMc01415 at 2265.378 kb on + strand, within SMc01415 at 2265.378 kb on + strand, within SMc01415 at 2265.379 kb on - strand, within SMc01415 at 2265.379 kb on - strand, within SMc01415 at 2265.509 kb on - strand, within SMc01415
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 2,262,563 + SMc01492 0.71 -0.1 2,262,564 - SMc01492 0.71 +0.8 2,262,819 - SMc01492 0.84 -3.6 2,262,860 + SMc01492 0.87 +1.3 2,262,891 - SMc01492 0.88 -2.8 2,262,912 - SMc01492 0.89 -0.9 2,262,923 + SMc01492 0.90 +0.1 2,262,923 + SMc01492 0.90 +0.6 2,262,962 + -0.3 2,262,962 + -0.5 2,263,098 + -0.6 2,263,098 + +2.0 2,263,098 + +0.5 2,263,099 - +0.8 2,263,099 - -0.8 2,263,099 - -1.2 2,263,110 - +1.2 2,263,110 - -2.2 2,263,394 + -0.7 2,263,395 - -0.5 2,263,414 - -0.3 2,263,515 - SMc01414 0.14 +0.1 2,263,723 + SMc01414 0.30 -0.6 2,263,723 + SMc01414 0.30 -1.7 2,263,723 + SMc01414 0.30 -0.4 2,263,724 - SMc01414 0.30 -0.8 2,263,759 - SMc01414 0.33 -0.5 2,263,791 - SMc01414 0.36 -2.4 2,263,945 - SMc01414 0.48 -2.4 2,264,009 + SMc01414 0.54 -2.6 2,264,009 + SMc01414 0.54 -0.9 2,264,010 - SMc01414 0.54 +0.2 2,264,237 + SMc01414 0.72 -2.3 2,264,238 - SMc01414 0.72 +0.8 2,264,385 - SMc01414 0.84 +0.5 2,264,558 - -0.2 2,264,686 - -3.2 2,264,686 - -0.7 2,265,180 - SMc01415 0.42 +0.5 2,265,215 + SMc01415 0.45 +1.1 2,265,215 + SMc01415 0.45 +0.5 2,265,216 - SMc01415 0.45 -2.5 2,265,216 - SMc01415 0.45 +0.8 2,265,216 - SMc01415 0.45 -0.3 2,265,378 + SMc01415 0.60 +0.1 2,265,378 + SMc01415 0.60 -0.7 2,265,379 - SMc01415 0.60 -0.2 2,265,379 - SMc01415 0.60 +3.0 2,265,509 - SMc01415 0.72 +0.6
Or see this region's nucleotide sequence