Strain Fitness in Sinorhizobium meliloti 1021 around SMa1683

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1682 and SMa1683 are separated by 82 nucleotidesSMa1683 and SMa1684 are separated by 336 nucleotides SMa1682: SMa1682 - nonspecific acid phosphatase precursor, at 945,870 to 946,883 SMa1682 SMa1683: SMa1683 - arylsulfatase, at 946,966 to 948,633 SMa1683 SMa1684: SMa1684 - Sensory histidine kinase, at 948,970 to 950,853 SMa1684 Position (kb) 946 947 948 949Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 945.986 kb on - strand, within SMa1682at 946.020 kb on + strand, within SMa1682at 946.020 kb on + strand, within SMa1682at 946.020 kb on + strand, within SMa1682at 946.021 kb on - strand, within SMa1682at 946.021 kb on - strand, within SMa1682at 946.021 kb on - strand, within SMa1682at 946.021 kb on - strand, within SMa1682at 946.121 kb on + strand, within SMa1682at 946.122 kb on - strand, within SMa1682at 946.239 kb on + strand, within SMa1682at 946.346 kb on - strand, within SMa1682at 946.346 kb on - strand, within SMa1682at 946.346 kb on - strand, within SMa1682at 946.388 kb on - strand, within SMa1682at 946.492 kb on - strand, within SMa1682at 946.628 kb on + strand, within SMa1682at 946.630 kb on + strand, within SMa1682at 946.630 kb on + strand, within SMa1682at 946.630 kb on + strand, within SMa1682at 946.631 kb on - strand, within SMa1682at 946.631 kb on - strand, within SMa1682at 946.631 kb on - strand, within SMa1682at 946.967 kb on + strandat 946.968 kb on - strandat 946.968 kb on - strandat 947.066 kb on + strandat 947.067 kb on - strandat 947.166 kb on + strand, within SMa1683at 947.168 kb on + strand, within SMa1683at 947.169 kb on - strand, within SMa1683at 947.169 kb on - strand, within SMa1683at 947.189 kb on + strand, within SMa1683at 947.190 kb on - strand, within SMa1683at 947.190 kb on - strand, within SMa1683at 947.335 kb on - strand, within SMa1683at 947.335 kb on - strand, within SMa1683at 947.335 kb on - strand, within SMa1683at 947.336 kb on + strand, within SMa1683at 947.336 kb on + strand, within SMa1683at 947.337 kb on - strand, within SMa1683at 947.441 kb on + strand, within SMa1683at 947.441 kb on + strand, within SMa1683at 947.441 kb on + strand, within SMa1683at 947.486 kb on - strand, within SMa1683at 947.617 kb on + strand, within SMa1683at 947.618 kb on - strand, within SMa1683at 947.800 kb on - strand, within SMa1683at 947.936 kb on + strand, within SMa1683at 947.937 kb on - strand, within SMa1683at 947.937 kb on - strand, within SMa1683at 947.937 kb on - strand, within SMa1683at 947.992 kb on - strand, within SMa1683at 947.992 kb on - strand, within SMa1683at 947.999 kb on + strand, within SMa1683at 948.128 kb on + strand, within SMa1683at 948.128 kb on + strand, within SMa1683at 948.129 kb on - strand, within SMa1683at 948.129 kb on - strand, within SMa1683at 948.129 kb on - strand, within SMa1683at 948.134 kb on + strand, within SMa1683at 948.134 kb on + strand, within SMa1683at 948.135 kb on - strand, within SMa1683at 948.135 kb on - strand, within SMa1683at 948.135 kb on - strand, within SMa1683at 948.135 kb on - strand, within SMa1683at 948.150 kb on - strand, within SMa1683at 948.162 kb on - strand, within SMa1683at 948.201 kb on - strand, within SMa1683at 948.236 kb on + strand, within SMa1683at 948.237 kb on - strand, within SMa1683at 948.237 kb on - strand, within SMa1683at 948.237 kb on - strand, within SMa1683at 948.398 kb on + strand, within SMa1683at 948.581 kb on - strandat 948.737 kb on - strandat 948.750 kb on + strandat 948.751 kb on - strandat 948.863 kb on + strandat 948.919 kb on - strandat 948.938 kb on + strandat 948.938 kb on + strandat 949.109 kb on + strandat 949.115 kb on - strandat 949.115 kb on - strandat 949.133 kb on + strandat 949.270 kb on + strand, within SMa1684at 949.271 kb on - strand, within SMa1684at 949.271 kb on - strand, within SMa1684at 949.285 kb on + strand, within SMa1684at 949.286 kb on - strand, within SMa1684at 949.286 kb on - strand, within SMa1684at 949.328 kb on + strand, within SMa1684at 949.382 kb on + strand, within SMa1684at 949.466 kb on + strand, within SMa1684at 949.466 kb on + strand, within SMa1684at 949.467 kb on - strand, within SMa1684at 949.601 kb on - strand, within SMa1684

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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945,986 - SMa1682 0.11 -0.5
946,020 + SMa1682 0.15 +2.2
946,020 + SMa1682 0.15 +1.5
946,020 + SMa1682 0.15 +1.8
946,021 - SMa1682 0.15 -0.0
946,021 - SMa1682 0.15 -1.5
946,021 - SMa1682 0.15 +0.2
946,021 - SMa1682 0.15 +0.1
946,121 + SMa1682 0.25 -1.4
946,122 - SMa1682 0.25 -0.3
946,239 + SMa1682 0.36 +1.8
946,346 - SMa1682 0.47 -0.9
946,346 - SMa1682 0.47 -3.0
946,346 - SMa1682 0.47 -1.2
946,388 - SMa1682 0.51 -0.2
946,492 - SMa1682 0.61 +0.4
946,628 + SMa1682 0.75 +2.1
946,630 + SMa1682 0.75 -0.3
946,630 + SMa1682 0.75 -2.7
946,630 + SMa1682 0.75 +0.5
946,631 - SMa1682 0.75 +0.5
946,631 - SMa1682 0.75 -0.5
946,631 - SMa1682 0.75 -0.6
946,967 + +0.6
946,968 - -0.1
946,968 - +0.5
947,066 + -0.2
947,067 - -0.0
947,166 + SMa1683 0.12 -0.2
947,168 + SMa1683 0.12 +1.8
947,169 - SMa1683 0.12 -1.8
947,169 - SMa1683 0.12 +0.2
947,189 + SMa1683 0.13 +1.7
947,190 - SMa1683 0.13 -0.4
947,190 - SMa1683 0.13 -1.6
947,335 - SMa1683 0.22 -0.1
947,335 - SMa1683 0.22 -0.1
947,335 - SMa1683 0.22 -1.2
947,336 + SMa1683 0.22 -1.6
947,336 + SMa1683 0.22 -0.5
947,337 - SMa1683 0.22 +0.2
947,441 + SMa1683 0.28 +0.3
947,441 + SMa1683 0.28 -1.1
947,441 + SMa1683 0.28 -1.0
947,486 - SMa1683 0.31 -0.6
947,617 + SMa1683 0.39 -0.0
947,618 - SMa1683 0.39 +0.2
947,800 - SMa1683 0.50 -1.2
947,936 + SMa1683 0.58 +0.2
947,937 - SMa1683 0.58 -1.2
947,937 - SMa1683 0.58 +0.1
947,937 - SMa1683 0.58 +0.1
947,992 - SMa1683 0.62 +0.5
947,992 - SMa1683 0.62 -1.1
947,999 + SMa1683 0.62 +0.2
948,128 + SMa1683 0.70 +1.6
948,128 + SMa1683 0.70 +2.8
948,129 - SMa1683 0.70 -3.0
948,129 - SMa1683 0.70 -1.3
948,129 - SMa1683 0.70 +0.5
948,134 + SMa1683 0.70 +0.5
948,134 + SMa1683 0.70 -1.5
948,135 - SMa1683 0.70 -0.4
948,135 - SMa1683 0.70 +0.7
948,135 - SMa1683 0.70 +2.5
948,135 - SMa1683 0.70 -0.5
948,150 - SMa1683 0.71 +0.9
948,162 - SMa1683 0.72 -2.3
948,201 - SMa1683 0.74 -2.0
948,236 + SMa1683 0.76 -0.3
948,237 - SMa1683 0.76 -3.7
948,237 - SMa1683 0.76 -0.3
948,237 - SMa1683 0.76 -1.0
948,398 + SMa1683 0.86 +0.4
948,581 - +0.4
948,737 - -1.4
948,750 + -1.6
948,751 - -0.8
948,863 + -1.7
948,919 - -0.9
948,938 + -0.1
948,938 + -0.3
949,109 + -2.6
949,115 - +0.1
949,115 - -0.5
949,133 + +0.1
949,270 + SMa1684 0.16 +0.9
949,271 - SMa1684 0.16 -0.1
949,271 - SMa1684 0.16 +0.2
949,285 + SMa1684 0.17 -1.3
949,286 - SMa1684 0.17 -1.0
949,286 - SMa1684 0.17 +0.4
949,328 + SMa1684 0.19 +0.1
949,382 + SMa1684 0.22 -0.6
949,466 + SMa1684 0.26 -4.3
949,466 + SMa1684 0.26 +0.1
949,467 - SMa1684 0.26 +0.0
949,601 - SMa1684 0.33 +0.1

Or see this region's nucleotide sequence