Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1195 and SMa1197 are separated by 175 nucleotides SMa1197 and SMa1198 are separated by 53 nucleotides SMa1198 and SMa1200 are separated by 64 nucleotides SMa1200 and SMa1201 are separated by 218 nucleotides
SMa1195: SMa1195 - hypothetical protein, at 657,562 to 658,236
SMa1195
SMa1197: SMa1197 - hypothetical protein, at 658,412 to 658,774
SMa1197
SMa1198: SMa1198 - copper export protein, at 658,828 to 660,453
SMa1198
SMa1200: SMa1200 - hypothetical protein, at 660,518 to 661,033
SMa1200
SMa1201: SMa1201 - hypothetical protein, at 661,252 to 661,632
SMa1201
Position (kb) 658
659
660
661 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 657.883 kb on + strand, within SMa1195 at 657.883 kb on + strand, within SMa1195 at 657.989 kb on + strand, within SMa1195 at 657.989 kb on + strand, within SMa1195 at 657.990 kb on - strand, within SMa1195 at 658.054 kb on + strand, within SMa1195 at 658.055 kb on - strand, within SMa1195 at 658.225 kb on + strand at 658.282 kb on + strand at 658.330 kb on + strand at 658.330 kb on + strand at 658.330 kb on + strand at 658.331 kb on - strand at 658.535 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.541 kb on - strand, within SMa1197 at 658.669 kb on + strand, within SMa1197 at 658.670 kb on - strand, within SMa1197 at 658.670 kb on - strand, within SMa1197 at 658.714 kb on + strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.776 kb on + strand at 658.777 kb on - strand at 658.988 kb on - strand at 658.988 kb on - strand at 659.498 kb on + strand, within SMa1198 at 659.498 kb on + strand, within SMa1198 at 659.499 kb on - strand, within SMa1198 at 659.543 kb on - strand, within SMa1198 at 659.769 kb on + strand, within SMa1198 at 659.962 kb on + strand, within SMa1198 at 659.979 kb on - strand, within SMa1198 at 659.979 kb on - strand, within SMa1198 at 660.001 kb on + strand, within SMa1198 at 660.453 kb on + strand at 660.454 kb on - strand at 660.454 kb on - strand at 660.454 kb on - strand at 660.456 kb on + strand at 660.457 kb on - strand at 660.457 kb on - strand at 660.473 kb on - strand at 660.549 kb on - strand at 660.654 kb on + strand, within SMa1200 at 660.655 kb on - strand, within SMa1200 at 660.656 kb on + strand, within SMa1200 at 660.656 kb on + strand, within SMa1200 at 660.656 kb on + strand, within SMa1200 at 660.942 kb on + strand, within SMa1200 at 660.943 kb on - strand, within SMa1200 at 660.943 kb on - strand, within SMa1200 at 661.144 kb on - strand at 661.144 kb on - strand at 661.167 kb on + strand at 661.167 kb on + strand at 661.208 kb on - strand at 661.222 kb on + strand at 661.223 kb on - strand at 661.313 kb on - strand, within SMa1201 at 661.441 kb on - strand, within SMa1201 at 661.441 kb on - strand, within SMa1201 at 661.441 kb on - strand, within SMa1201
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 657,883 + SMa1195 0.48 -0.6 657,883 + SMa1195 0.48 -1.6 657,989 + SMa1195 0.63 -2.4 657,989 + SMa1195 0.63 -2.8 657,990 - SMa1195 0.63 +0.8 658,054 + SMa1195 0.73 +0.6 658,055 - SMa1195 0.73 +0.1 658,225 + +0.6 658,282 + -1.0 658,330 + +3.2 658,330 + +1.0 658,330 + +0.8 658,331 - -0.9 658,535 + SMa1197 0.34 -0.5 658,540 + SMa1197 0.35 -0.9 658,540 + SMa1197 0.35 +0.4 658,540 + SMa1197 0.35 -0.5 658,541 - SMa1197 0.36 -0.0 658,669 + SMa1197 0.71 -1.4 658,670 - SMa1197 0.71 -0.7 658,670 - SMa1197 0.71 -0.7 658,714 + SMa1197 0.83 +0.8 658,715 - SMa1197 0.83 -0.5 658,715 - SMa1197 0.83 +0.1 658,715 - SMa1197 0.83 -0.1 658,715 - SMa1197 0.83 +0.2 658,776 + -0.3 658,777 - -0.2 658,988 - -0.1 658,988 - -0.5 659,498 + SMa1198 0.41 -0.9 659,498 + SMa1198 0.41 +0.2 659,499 - SMa1198 0.41 +0.7 659,543 - SMa1198 0.44 -1.9 659,769 + SMa1198 0.58 +0.1 659,962 + SMa1198 0.70 +0.5 659,979 - SMa1198 0.71 -0.5 659,979 - SMa1198 0.71 -2.8 660,001 + SMa1198 0.72 -0.2 660,453 + -0.2 660,454 - -0.1 660,454 - -3.2 660,454 - +0.6 660,456 + -0.2 660,457 - +0.4 660,457 - -0.4 660,473 - -2.1 660,549 - -2.2 660,654 + SMa1200 0.26 +0.8 660,655 - SMa1200 0.27 +0.4 660,656 + SMa1200 0.27 -1.3 660,656 + SMa1200 0.27 -3.0 660,656 + SMa1200 0.27 -1.2 660,942 + SMa1200 0.82 +0.9 660,943 - SMa1200 0.82 +0.9 660,943 - SMa1200 0.82 -1.1 661,144 - +0.1 661,144 - -0.8 661,167 + -3.4 661,167 + -1.0 661,208 - +0.1 661,222 + -2.1 661,223 - +0.3 661,313 - SMa1201 0.16 -0.0 661,441 - SMa1201 0.50 -2.2 661,441 - SMa1201 0.50 +1.8 661,441 - SMa1201 0.50 -1.4
Or see this region's nucleotide sequence