Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0510 and SMa0512 are separated by 10 nucleotides SMa0512 and SMa0513 are separated by 69 nucleotides SMa0513 and SMa0514 are separated by 1 nucleotides
SMa0510: SMa0510 - D-isomer specific 2-hydroxyacid dehydrogenase, at 275,787 to 276,734
SMa0510
SMa0512: SMa0512 - IdnD L-idonate 5-dehydrogenase, at 276,745 to 277,776
SMa0512
SMa0513: SMa0513 - gluconate 5-dehydrogenase, at 277,846 to 278,601
SMa0513
SMa0514: SMa0514 - gluconate kinase, at 278,603 to 279,121
SMa0514
Position (kb) 276
277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 275.803 kb on + strand at 275.803 kb on + strand at 275.803 kb on + strand at 275.804 kb on - strand at 275.804 kb on - strand at 276.018 kb on + strand, within SMa0510 at 276.018 kb on + strand, within SMa0510 at 276.019 kb on - strand, within SMa0510 at 276.019 kb on - strand, within SMa0510 at 276.196 kb on - strand, within SMa0510 at 276.303 kb on + strand, within SMa0510 at 276.304 kb on - strand, within SMa0510 at 276.426 kb on - strand, within SMa0510 at 276.871 kb on + strand, within SMa0512 at 276.871 kb on + strand, within SMa0512 at 276.872 kb on - strand, within SMa0512 at 276.874 kb on + strand, within SMa0512 at 276.874 kb on + strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 276.875 kb on - strand, within SMa0512 at 277.033 kb on + strand, within SMa0512 at 277.034 kb on - strand, within SMa0512 at 277.463 kb on - strand, within SMa0512 at 277.463 kb on - strand, within SMa0512 at 277.774 kb on + strand at 277.779 kb on - strand at 277.779 kb on - strand at 277.779 kb on - strand at 277.845 kb on + strand at 277.845 kb on + strand at 277.846 kb on - strand at 277.846 kb on - strand at 277.846 kb on - strand at 278.308 kb on + strand, within SMa0513 at 278.309 kb on - strand, within SMa0513 at 278.309 kb on - strand, within SMa0513 at 278.569 kb on + strand at 278.570 kb on - strand at 278.570 kb on - strand at 278.705 kb on + strand, within SMa0514 at 278.705 kb on + strand, within SMa0514 at 278.706 kb on - strand, within SMa0514 at 278.706 kb on - strand, within SMa0514
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 275,803 + -0.4 275,803 + +0.4 275,803 + +0.2 275,804 - -0.1 275,804 - +0.5 276,018 + SMa0510 0.24 -0.3 276,018 + SMa0510 0.24 +0.2 276,019 - SMa0510 0.24 +0.8 276,019 - SMa0510 0.24 -0.4 276,196 - SMa0510 0.43 -1.1 276,303 + SMa0510 0.54 -0.8 276,304 - SMa0510 0.55 -1.3 276,426 - SMa0510 0.67 +0.6 276,871 + SMa0512 0.12 +0.8 276,871 + SMa0512 0.12 +0.1 276,872 - SMa0512 0.12 +0.8 276,874 + SMa0512 0.12 -1.7 276,874 + SMa0512 0.12 -0.8 276,875 - SMa0512 0.13 -1.3 276,875 - SMa0512 0.13 -1.5 276,875 - SMa0512 0.13 -0.3 276,875 - SMa0512 0.13 -0.8 277,033 + SMa0512 0.28 +0.5 277,034 - SMa0512 0.28 -0.6 277,463 - SMa0512 0.70 +0.0 277,463 - SMa0512 0.70 -1.3 277,774 + -2.9 277,779 - +1.1 277,779 - +0.4 277,779 - +1.4 277,845 + +0.4 277,845 + -0.4 277,846 - +0.5 277,846 - +0.4 277,846 - +0.6 278,308 + SMa0513 0.61 -0.9 278,309 - SMa0513 0.61 -2.7 278,309 - SMa0513 0.61 -0.1 278,569 + +4.2 278,570 - +3.8 278,570 - +0.2 278,705 + SMa0514 0.20 -3.0 278,705 + SMa0514 0.20 +0.1 278,706 - SMa0514 0.20 +0.9 278,706 - SMa0514 0.20 -0.5
Or see this region's nucleotide sequence