Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21356

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21355 and SM_b21356 are separated by 94 nucleotidesSM_b21356 and SM_b21357 are separated by 97 nucleotidesSM_b21357 and SM_b21358 are separated by 52 nucleotides SM_b21355: SM_b21355 - oxidoreductase, at 1,021,063 to 1,022,082 _b21355 SM_b21356: SM_b21356 - hypothetical protein, at 1,022,177 to 1,023,169 _b21356 SM_b21357: SM_b21357 - hypothetical protein, at 1,023,267 to 1,023,785 _b21357 SM_b21358: SM_b21358 - hypothetical protein, at 1,023,838 to 1,024,332 _b21358 Position (kb) 1022 1023 1024Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1021.207 kb on + strand, within SM_b21355at 1021.274 kb on + strand, within SM_b21355at 1021.274 kb on + strand, within SM_b21355at 1021.275 kb on - strand, within SM_b21355at 1021.413 kb on - strand, within SM_b21355at 1021.543 kb on + strand, within SM_b21355at 1021.543 kb on + strand, within SM_b21355at 1021.544 kb on - strand, within SM_b21355at 1021.544 kb on - strand, within SM_b21355at 1021.611 kb on - strand, within SM_b21355at 1021.666 kb on + strand, within SM_b21355at 1021.667 kb on - strand, within SM_b21355at 1021.796 kb on + strand, within SM_b21355at 1021.797 kb on - strand, within SM_b21355at 1021.802 kb on + strand, within SM_b21355at 1021.803 kb on - strand, within SM_b21355at 1021.803 kb on - strand, within SM_b21355at 1022.105 kb on + strandat 1022.105 kb on + strandat 1022.106 kb on - strandat 1022.125 kb on - strandat 1022.335 kb on - strand, within SM_b21356at 1022.346 kb on + strand, within SM_b21356at 1022.346 kb on + strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.347 kb on - strand, within SM_b21356at 1022.354 kb on + strand, within SM_b21356at 1022.355 kb on - strand, within SM_b21356at 1022.739 kb on + strandat 1022.748 kb on - strand, within SM_b21356at 1022.902 kb on + strand, within SM_b21356at 1022.942 kb on + strand, within SM_b21356at 1022.943 kb on - strand, within SM_b21356at 1022.966 kb on + strand, within SM_b21356at 1022.966 kb on + strand, within SM_b21356at 1022.967 kb on - strand, within SM_b21356at 1022.967 kb on - strand, within SM_b21356at 1022.979 kb on - strand, within SM_b21356at 1023.220 kb on + strandat 1023.261 kb on + strandat 1023.262 kb on - strandat 1023.262 kb on - strandat 1023.376 kb on + strand, within SM_b21357at 1023.376 kb on + strand, within SM_b21357at 1023.376 kb on + strand, within SM_b21357at 1023.376 kb on + strand, within SM_b21357at 1023.377 kb on - strand, within SM_b21357at 1023.377 kb on - strand, within SM_b21357at 1023.428 kb on + strand, within SM_b21357at 1023.429 kb on - strand, within SM_b21357at 1023.429 kb on - strand, within SM_b21357at 1023.637 kb on + strand, within SM_b21357at 1023.637 kb on + strand, within SM_b21357at 1023.638 kb on - strand, within SM_b21357at 1023.700 kb on - strand, within SM_b21357at 1023.783 kb on + strandat 1023.783 kb on + strandat 1023.783 kb on + strandat 1023.844 kb on + strandat 1023.859 kb on + strandat 1023.860 kb on - strandat 1024.046 kb on + strand, within SM_b21358at 1024.046 kb on + strand, within SM_b21358at 1024.046 kb on + strand, within SM_b21358at 1024.046 kb on + strand, within SM_b21358at 1024.046 kb on + strand, within SM_b21358at 1024.047 kb on - strand, within SM_b21358at 1024.047 kb on - strandat 1024.047 kb on - strand, within SM_b21358

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,021,207 + SM_b21355 0.14 -0.4
1,021,274 + SM_b21355 0.21 +0.4
1,021,274 + SM_b21355 0.21 -1.8
1,021,275 - SM_b21355 0.21 +0.8
1,021,413 - SM_b21355 0.34 -0.8
1,021,543 + SM_b21355 0.47 -0.7
1,021,543 + SM_b21355 0.47 -0.0
1,021,544 - SM_b21355 0.47 +0.1
1,021,544 - SM_b21355 0.47 +0.2
1,021,611 - SM_b21355 0.54 -1.2
1,021,666 + SM_b21355 0.59 -0.2
1,021,667 - SM_b21355 0.59 -0.7
1,021,796 + SM_b21355 0.72 -0.5
1,021,797 - SM_b21355 0.72 +0.9
1,021,802 + SM_b21355 0.72 -0.9
1,021,803 - SM_b21355 0.73 -0.4
1,021,803 - SM_b21355 0.73 +0.4
1,022,105 + -2.8
1,022,105 + -2.6
1,022,106 - +0.2
1,022,125 - -0.2
1,022,335 - SM_b21356 0.16 -1.3
1,022,346 + SM_b21356 0.17 -1.0
1,022,346 + SM_b21356 0.17 -2.1
1,022,347 - SM_b21356 0.17 +0.1
1,022,347 - SM_b21356 0.17 -0.2
1,022,347 - SM_b21356 0.17 +0.7
1,022,347 - SM_b21356 0.17 +0.1
1,022,354 + SM_b21356 0.18 -0.2
1,022,355 - SM_b21356 0.18 -2.5
1,022,739 + +2.9
1,022,748 - SM_b21356 0.58 -1.1
1,022,902 + SM_b21356 0.73 +1.5
1,022,942 + SM_b21356 0.77 +0.1
1,022,943 - SM_b21356 0.77 +0.1
1,022,966 + SM_b21356 0.79 +0.7
1,022,966 + SM_b21356 0.79 -2.8
1,022,967 - SM_b21356 0.80 -2.8
1,022,967 - SM_b21356 0.80 +0.8
1,022,979 - SM_b21356 0.81 -0.5
1,023,220 + +0.6
1,023,261 + -1.0
1,023,262 - -0.9
1,023,262 - -2.0
1,023,376 + SM_b21357 0.21 +0.1
1,023,376 + SM_b21357 0.21 -0.7
1,023,376 + SM_b21357 0.21 -2.1
1,023,376 + SM_b21357 0.21 -2.2
1,023,377 - SM_b21357 0.21 -0.7
1,023,377 - SM_b21357 0.21 +0.6
1,023,428 + SM_b21357 0.31 -1.1
1,023,429 - SM_b21357 0.31 -1.0
1,023,429 - SM_b21357 0.31 -0.7
1,023,637 + SM_b21357 0.71 -0.6
1,023,637 + SM_b21357 0.71 -4.4
1,023,638 - SM_b21357 0.71 -3.6
1,023,700 - SM_b21357 0.83 -0.0
1,023,783 + -0.5
1,023,783 + -0.4
1,023,783 + -0.2
1,023,844 + +0.7
1,023,859 + +1.4
1,023,860 - -2.9
1,024,046 + SM_b21358 0.42 -1.1
1,024,046 + SM_b21358 0.42 -0.4
1,024,046 + SM_b21358 0.42 -0.1
1,024,046 + SM_b21358 0.42 -0.7
1,024,046 + SM_b21358 0.42 +1.1
1,024,047 - SM_b21358 0.42 -0.7
1,024,047 - +1.9
1,024,047 - SM_b21358 0.42 +0.2

Or see this region's nucleotide sequence