Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21271

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21269 and SM_b21270 are separated by 96 nucleotidesSM_b21270 and SM_b21271 are separated by 83 nucleotidesSM_b21271 and SM_b21272 are separated by 147 nucleotides SM_b21269: SM_b21269 - ABC transporter ATPase, at 842,345 to 844,435 _b21269 SM_b21270: SM_b21270 - transcriptional regulator, at 844,532 to 844,996 _b21270 SM_b21271: SM_b21271 - nucleotide-binding protein, at 845,080 to 845,829 _b21271 SM_b21272: SM_b21272 - LacI family transcriptional regulator, at 845,977 to 847,047 _b21272 Position (kb) 845 846Strain fitness (log2 ratio) -2 -1 0 1 2at 844.196 kb on + strand, within SM_b21269at 844.299 kb on + strandat 844.416 kb on - strandat 844.416 kb on - strandat 844.416 kb on - strandat 844.438 kb on + strandat 844.438 kb on + strandat 844.438 kb on + strandat 844.438 kb on + strandat 844.439 kb on - strandat 844.439 kb on - strandat 844.439 kb on - strandat 844.439 kb on - strandat 844.439 kb on - strandat 844.441 kb on + strandat 844.441 kb on + strandat 844.442 kb on - strandat 844.442 kb on - strandat 844.442 kb on - strandat 844.463 kb on + strandat 844.463 kb on + strandat 844.463 kb on + strandat 844.464 kb on - strandat 844.464 kb on - strandat 844.464 kb on - strandat 844.532 kb on - strandat 844.539 kb on + strandat 844.638 kb on - strand, within SM_b21270at 844.688 kb on + strand, within SM_b21270at 844.688 kb on + strand, within SM_b21270at 844.689 kb on - strand, within SM_b21270at 845.068 kb on + strandat 845.069 kb on - strandat 845.096 kb on - strandat 845.096 kb on - strandat 845.113 kb on + strandat 845.224 kb on + strand, within SM_b21271at 845.225 kb on - strand, within SM_b21271at 845.225 kb on - strand, within SM_b21271at 845.227 kb on - strand, within SM_b21271at 845.566 kb on + strand, within SM_b21271at 845.566 kb on + strand, within SM_b21271at 845.567 kb on - strand, within SM_b21271at 845.715 kb on - strand, within SM_b21271at 845.715 kb on - strand, within SM_b21271at 845.882 kb on + strandat 845.883 kb on - strandat 845.883 kb on - strandat 845.883 kb on - strandat 845.883 kb on - strandat 845.885 kb on + strandat 845.885 kb on + strandat 845.927 kb on + strandat 845.928 kb on - strandat 845.970 kb on + strandat 845.970 kb on + strandat 845.971 kb on - strandat 846.008 kb on + strandat 846.008 kb on + strandat 846.008 kb on + strandat 846.009 kb on - strandat 846.009 kb on - strandat 846.532 kb on - strand, within SM_b21272at 846.532 kb on - strand, within SM_b21272

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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844,196 + SM_b21269 0.89 +0.2
844,299 + +0.5
844,416 - +0.0
844,416 - +1.6
844,416 - -0.2
844,438 + +0.4
844,438 + -1.1
844,438 + +0.7
844,438 + -0.9
844,439 - -1.4
844,439 - +0.3
844,439 - -0.7
844,439 - +0.3
844,439 - +0.9
844,441 + -0.2
844,441 + +0.8
844,442 - +0.4
844,442 - -2.1
844,442 - +0.2
844,463 + +0.0
844,463 + +0.1
844,463 + -0.3
844,464 - -0.8
844,464 - +0.6
844,464 - +0.0
844,532 - -0.7
844,539 + -1.6
844,638 - SM_b21270 0.23 +0.8
844,688 + SM_b21270 0.34 +0.9
844,688 + SM_b21270 0.34 -0.0
844,689 - SM_b21270 0.34 +0.7
845,068 + -1.8
845,069 - +2.3
845,096 - -1.4
845,096 - +1.1
845,113 + +1.6
845,224 + SM_b21271 0.19 +1.6
845,225 - SM_b21271 0.19 +0.7
845,225 - SM_b21271 0.19 +0.7
845,227 - SM_b21271 0.20 -0.5
845,566 + SM_b21271 0.65 +0.5
845,566 + SM_b21271 0.65 +0.0
845,567 - SM_b21271 0.65 -0.2
845,715 - SM_b21271 0.85 +0.5
845,715 - SM_b21271 0.85 -1.1
845,882 + -1.8
845,883 - -0.5
845,883 - +0.9
845,883 - +0.9
845,883 - -1.8
845,885 + -0.0
845,885 + +0.8
845,927 + -0.8
845,928 - +1.6
845,970 + +0.7
845,970 + -0.5
845,971 - -0.3
846,008 + -0.0
846,008 + -0.3
846,008 + -0.9
846,009 - +0.9
846,009 - +0.9
846,532 - SM_b21272 0.52 +0.1
846,532 - SM_b21272 0.52 +0.3

Or see this region's nucleotide sequence