Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20765

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20763 and SM_b20764 are separated by 33 nucleotidesSM_b20764 and SM_b20765 overlap by 4 nucleotidesSM_b20765 and SM_b20766 are separated by 127 nucleotides SM_b20763: SM_b20763 - phosphonate C-P lyase system protein PhnK, at 1,555,056 to 1,555,832 _b20763 SM_b20764: SM_b20764 - phosphonate uptake ABC transporter ATP-binding protein, at 1,555,866 to 1,556,573 _b20764 SM_b20765: SM_b20765 - acetyltransferase, at 1,556,570 to 1,557,184 _b20765 SM_b20766: SM_b20766 - transposase of insertion sequence ISRm22 protein, at 1,557,312 to 1,558,475 _b20766 Position (kb) 1556 1557 1558Strain fitness (log2 ratio) -2 -1 0 1 2at 1555.858 kb on + strandat 1556.643 kb on - strand, within SM_b20765at 1556.699 kb on + strand, within SM_b20765at 1556.700 kb on - strand, within SM_b20765at 1556.700 kb on - strand, within SM_b20765at 1556.833 kb on + strand, within SM_b20765at 1556.833 kb on + strand, within SM_b20765at 1556.833 kb on + strand, within SM_b20765at 1556.834 kb on - strand, within SM_b20765at 1556.834 kb on - strand, within SM_b20765at 1556.834 kb on - strand, within SM_b20765at 1556.834 kb on - strand, within SM_b20765at 1556.834 kb on - strand, within SM_b20765at 1556.834 kb on - strand, within SM_b20765at 1556.838 kb on - strand, within SM_b20765at 1556.838 kb on - strand, within SM_b20765at 1557.011 kb on + strand, within SM_b20765at 1557.012 kb on - strand, within SM_b20765at 1557.177 kb on - strandat 1557.178 kb on + strandat 1557.178 kb on + strandat 1557.178 kb on + strandat 1557.179 kb on - strandat 1557.179 kb on - strandat 1557.195 kb on + strandat 1557.196 kb on - strandat 1557.196 kb on - strandat 1557.196 kb on - strandat 1557.196 kb on - strandat 1557.200 kb on + strandat 1557.269 kb on - strandat 1557.269 kb on - strandat 1557.269 kb on - strandat 1557.269 kb on - strandat 1557.318 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,555,858 + -1.6
1,556,643 - SM_b20765 0.12 +1.1
1,556,699 + SM_b20765 0.21 -0.3
1,556,700 - SM_b20765 0.21 +0.2
1,556,700 - SM_b20765 0.21 +1.2
1,556,833 + SM_b20765 0.43 +0.3
1,556,833 + SM_b20765 0.43 +1.7
1,556,833 + SM_b20765 0.43 +1.3
1,556,834 - SM_b20765 0.43 +1.5
1,556,834 - SM_b20765 0.43 -0.1
1,556,834 - SM_b20765 0.43 -0.3
1,556,834 - SM_b20765 0.43 +0.3
1,556,834 - SM_b20765 0.43 -0.9
1,556,834 - SM_b20765 0.43 +2.0
1,556,838 - SM_b20765 0.44 -1.5
1,556,838 - SM_b20765 0.44 +0.7
1,557,011 + SM_b20765 0.72 +0.8
1,557,012 - SM_b20765 0.72 +0.4
1,557,177 - -2.1
1,557,178 + +1.0
1,557,178 + +0.7
1,557,178 + -0.5
1,557,179 - +0.6
1,557,179 - +0.7
1,557,195 + -2.3
1,557,196 - -1.2
1,557,196 - +0.8
1,557,196 - +0.6
1,557,196 - -0.2
1,557,200 + -0.1
1,557,269 - -0.5
1,557,269 - -2.6
1,557,269 - -2.7
1,557,269 - +1.0
1,557,318 - -2.2

Or see this region's nucleotide sequence