Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20763 and SM_b20764 are separated by 33 nucleotides SM_b20764 and SM_b20765 overlap by 4 nucleotides SM_b20765 and SM_b20766 are separated by 127 nucleotides
SM_b20763: SM_b20763 - phosphonate C-P lyase system protein PhnK, at 1,555,056 to 1,555,832
_b20763
SM_b20764: SM_b20764 - phosphonate uptake ABC transporter ATP-binding protein, at 1,555,866 to 1,556,573
_b20764
SM_b20765: SM_b20765 - acetyltransferase, at 1,556,570 to 1,557,184
_b20765
SM_b20766: SM_b20766 - transposase of insertion sequence ISRm22 protein, at 1,557,312 to 1,558,475
_b20766
Position (kb)
1556
1557
1558 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1555.858 kb on + strand at 1556.643 kb on - strand, within SM_b20765 at 1556.699 kb on + strand, within SM_b20765 at 1556.700 kb on - strand, within SM_b20765 at 1556.700 kb on - strand, within SM_b20765 at 1556.833 kb on + strand, within SM_b20765 at 1556.833 kb on + strand, within SM_b20765 at 1556.833 kb on + strand, within SM_b20765 at 1556.834 kb on - strand, within SM_b20765 at 1556.834 kb on - strand, within SM_b20765 at 1556.834 kb on - strand, within SM_b20765 at 1556.834 kb on - strand, within SM_b20765 at 1556.834 kb on - strand, within SM_b20765 at 1556.834 kb on - strand, within SM_b20765 at 1556.838 kb on - strand, within SM_b20765 at 1556.838 kb on - strand, within SM_b20765 at 1557.011 kb on + strand, within SM_b20765 at 1557.012 kb on - strand, within SM_b20765 at 1557.177 kb on - strand at 1557.178 kb on + strand at 1557.178 kb on + strand at 1557.178 kb on + strand at 1557.179 kb on - strand at 1557.179 kb on - strand at 1557.195 kb on + strand at 1557.196 kb on - strand at 1557.196 kb on - strand at 1557.196 kb on - strand at 1557.196 kb on - strand at 1557.200 kb on + strand at 1557.269 kb on - strand at 1557.269 kb on - strand at 1557.269 kb on - strand at 1557.269 kb on - strand at 1557.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 1,555,858 + -1.6 1,556,643 - SM_b20765 0.12 +1.1 1,556,699 + SM_b20765 0.21 -0.3 1,556,700 - SM_b20765 0.21 +0.2 1,556,700 - SM_b20765 0.21 +1.2 1,556,833 + SM_b20765 0.43 +0.3 1,556,833 + SM_b20765 0.43 +1.7 1,556,833 + SM_b20765 0.43 +1.3 1,556,834 - SM_b20765 0.43 +1.5 1,556,834 - SM_b20765 0.43 -0.1 1,556,834 - SM_b20765 0.43 -0.3 1,556,834 - SM_b20765 0.43 +0.3 1,556,834 - SM_b20765 0.43 -0.9 1,556,834 - SM_b20765 0.43 +2.0 1,556,838 - SM_b20765 0.44 -1.5 1,556,838 - SM_b20765 0.44 +0.7 1,557,011 + SM_b20765 0.72 +0.8 1,557,012 - SM_b20765 0.72 +0.4 1,557,177 - -2.1 1,557,178 + +1.0 1,557,178 + +0.7 1,557,178 + -0.5 1,557,179 - +0.6 1,557,179 - +0.7 1,557,195 + -2.3 1,557,196 - -1.2 1,557,196 - +0.8 1,557,196 - +0.6 1,557,196 - -0.2 1,557,200 + -0.1 1,557,269 - -0.5 1,557,269 - -2.6 1,557,269 - -2.7 1,557,269 - +1.0 1,557,318 - -2.2
Or see this region's nucleotide sequence