Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20614

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20613 and SM_b20614 are separated by 124 nucleotidesSM_b20614 and SM_b20615 are separated by 376 nucleotides SM_b20613: SM_b20613 - C4-dicarboxylate transport transcriptional regulator, at 1,630,003 to 1,631,385 _b20613 SM_b20614: SM_b20614 - hypothetical protein, at 1,631,510 to 1,633,567 _b20614 SM_b20615: SM_b20615 - thiamine biosynthesis protein ThiC, at 1,633,944 to 1,635,779 _b20615 Position (kb) 1631 1632 1633 1634Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1630.909 kb on + strand, within SM_b20613at 1630.909 kb on + strand, within SM_b20613at 1630.910 kb on - strand, within SM_b20613at 1630.912 kb on + strand, within SM_b20613at 1631.057 kb on - strand, within SM_b20613at 1631.203 kb on + strand, within SM_b20613at 1631.204 kb on - strand, within SM_b20613at 1631.335 kb on + strandat 1631.336 kb on - strandat 1631.336 kb on - strandat 1631.427 kb on - strandat 1631.511 kb on + strandat 1631.511 kb on + strandat 1631.779 kb on - strand, within SM_b20614at 1631.779 kb on - strand, within SM_b20614at 1631.960 kb on - strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.073 kb on + strand, within SM_b20614at 1632.074 kb on - strand, within SM_b20614at 1632.074 kb on - strand, within SM_b20614at 1632.112 kb on + strand, within SM_b20614at 1632.408 kb on + strand, within SM_b20614at 1632.409 kb on - strand, within SM_b20614at 1632.545 kb on - strand, within SM_b20614at 1632.545 kb on - strand, within SM_b20614at 1632.609 kb on + strand, within SM_b20614at 1632.609 kb on + strand, within SM_b20614at 1632.610 kb on - strand, within SM_b20614at 1632.733 kb on - strand, within SM_b20614at 1632.789 kb on + strand, within SM_b20614at 1632.789 kb on + strand, within SM_b20614at 1632.790 kb on - strand, within SM_b20614at 1632.790 kb on - strand, within SM_b20614at 1632.790 kb on - strand, within SM_b20614at 1632.832 kb on + strand, within SM_b20614at 1632.833 kb on - strand, within SM_b20614at 1632.834 kb on + strand, within SM_b20614at 1632.834 kb on + strand, within SM_b20614at 1632.835 kb on - strand, within SM_b20614at 1632.850 kb on - strand, within SM_b20614at 1633.168 kb on - strand, within SM_b20614at 1633.235 kb on + strand, within SM_b20614at 1633.235 kb on + strand, within SM_b20614at 1633.236 kb on - strand, within SM_b20614at 1633.264 kb on + strand, within SM_b20614at 1633.417 kb on + strandat 1633.418 kb on + strandat 1633.419 kb on - strandat 1633.432 kb on - strandat 1633.432 kb on - strandat 1633.460 kb on + strandat 1633.583 kb on - strandat 1633.727 kb on + strandat 1633.727 kb on + strandat 1633.728 kb on - strandat 1633.770 kb on + strandat 1633.771 kb on - strandat 1633.822 kb on + strandat 1633.951 kb on + strandat 1634.017 kb on - strandat 1634.017 kb on - strandat 1634.017 kb on - strandat 1634.215 kb on - strand, within SM_b20615at 1634.341 kb on - strand, within SM_b20615

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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1,630,909 + SM_b20613 0.66 -0.0
1,630,909 + SM_b20613 0.66 +0.8
1,630,910 - SM_b20613 0.66 +0.1
1,630,912 + SM_b20613 0.66 +0.5
1,631,057 - SM_b20613 0.76 +1.5
1,631,203 + SM_b20613 0.87 +1.3
1,631,204 - SM_b20613 0.87 -2.0
1,631,335 + -2.5
1,631,336 - -0.1
1,631,336 - +0.7
1,631,427 - -0.1
1,631,511 + +0.4
1,631,511 + +1.0
1,631,779 - SM_b20614 0.13 -0.6
1,631,779 - SM_b20614 0.13 +1.5
1,631,960 - SM_b20614 0.22 +0.8
1,632,073 + SM_b20614 0.27 +2.4
1,632,073 + SM_b20614 0.27 +1.3
1,632,073 + SM_b20614 0.27 -0.1
1,632,073 + SM_b20614 0.27 -1.1
1,632,073 + SM_b20614 0.27 +0.3
1,632,073 + SM_b20614 0.27 -0.4
1,632,074 - SM_b20614 0.27 +0.9
1,632,074 - SM_b20614 0.27 +0.6
1,632,112 + SM_b20614 0.29 -0.1
1,632,408 + SM_b20614 0.44 +0.5
1,632,409 - SM_b20614 0.44 -1.2
1,632,545 - SM_b20614 0.50 -0.3
1,632,545 - SM_b20614 0.50 -0.8
1,632,609 + SM_b20614 0.53 -1.4
1,632,609 + SM_b20614 0.53 +0.4
1,632,610 - SM_b20614 0.53 -1.1
1,632,733 - SM_b20614 0.59 +1.0
1,632,789 + SM_b20614 0.62 +0.4
1,632,789 + SM_b20614 0.62 -1.6
1,632,790 - SM_b20614 0.62 +2.0
1,632,790 - SM_b20614 0.62 +0.1
1,632,790 - SM_b20614 0.62 +0.3
1,632,832 + SM_b20614 0.64 +1.8
1,632,833 - SM_b20614 0.64 +2.0
1,632,834 + SM_b20614 0.64 -1.4
1,632,834 + SM_b20614 0.64 +1.9
1,632,835 - SM_b20614 0.64 -1.8
1,632,850 - SM_b20614 0.65 +1.1
1,633,168 - SM_b20614 0.81 +0.1
1,633,235 + SM_b20614 0.84 -1.0
1,633,235 + SM_b20614 0.84 +0.4
1,633,236 - SM_b20614 0.84 +0.5
1,633,264 + SM_b20614 0.85 -0.0
1,633,417 + +1.1
1,633,418 + +2.7
1,633,419 - -2.2
1,633,432 - -0.6
1,633,432 - +0.3
1,633,460 + -2.1
1,633,583 - +0.8
1,633,727 + +0.5
1,633,727 + -2.9
1,633,728 - +1.0
1,633,770 + -1.3
1,633,771 - -2.5
1,633,822 + +0.1
1,633,951 + +0.3
1,634,017 - +0.6
1,634,017 - -3.2
1,634,017 - +0.4
1,634,215 - SM_b20615 0.15 -0.6
1,634,341 - SM_b20615 0.22 +0.4

Or see this region's nucleotide sequence