Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20165

Experiment: L-Histidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20164 and SM_b20165 are separated by 106 nucleotidesSM_b20165 and SM_b20166 overlap by 4 nucleotidesSM_b20166 and SM_b20167 are separated by 73 nucleotides SM_b20164: SM_b20164 - sensor histidine kinase, at 181,977 to 184,220 _b20164 SM_b20165: SM_b20165 - hypothetical protein, at 184,327 to 184,998 _b20165 SM_b20166: SM_b20166 - hypothetical protein, at 184,995 to 185,348 _b20166 SM_b20167: SM_b20167 - hypothetical protein, at 185,422 to 186,234 _b20167 Position (kb) 184 185Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 183.510 kb on + strand, within SM_b20164at 183.510 kb on + strand, within SM_b20164at 183.511 kb on - strand, within SM_b20164at 183.513 kb on - strand, within SM_b20164at 183.568 kb on + strand, within SM_b20164at 183.569 kb on - strand, within SM_b20164at 183.569 kb on - strand, within SM_b20164at 183.574 kb on + strand, within SM_b20164at 183.574 kb on + strand, within SM_b20164at 183.575 kb on - strand, within SM_b20164at 183.575 kb on - strand, within SM_b20164at 183.575 kb on - strand, within SM_b20164at 183.595 kb on + strand, within SM_b20164at 184.006 kb on - strandat 184.034 kb on - strandat 184.267 kb on + strandat 184.268 kb on - strandat 184.332 kb on + strandat 184.332 kb on + strandat 184.399 kb on + strand, within SM_b20165at 184.484 kb on - strand, within SM_b20165at 184.484 kb on - strand, within SM_b20165at 184.576 kb on + strand, within SM_b20165at 184.577 kb on - strand, within SM_b20165at 184.609 kb on + strand, within SM_b20165at 184.610 kb on - strand, within SM_b20165at 184.699 kb on + strand, within SM_b20165at 184.699 kb on + strand, within SM_b20165at 184.699 kb on + strand, within SM_b20165at 184.699 kb on + strand, within SM_b20165at 184.897 kb on + strand, within SM_b20165at 184.900 kb on + strand, within SM_b20165at 184.900 kb on + strand, within SM_b20165at 185.106 kb on + strand, within SM_b20166at 185.106 kb on + strand, within SM_b20166at 185.106 kb on + strand, within SM_b20166at 185.149 kb on + strand, within SM_b20166at 185.208 kb on + strand, within SM_b20166at 185.208 kb on + strand, within SM_b20166at 185.208 kb on + strand, within SM_b20166at 185.209 kb on - strand, within SM_b20166at 185.209 kb on - strand, within SM_b20166at 185.346 kb on + strandat 185.472 kb on + strandat 185.517 kb on - strand, within SM_b20167at 185.517 kb on - strand, within SM_b20167at 185.517 kb on - strand, within SM_b20167at 185.517 kb on - strand, within SM_b20167at 185.517 kb on - strand, within SM_b20167at 185.663 kb on + strand, within SM_b20167at 185.664 kb on - strand, within SM_b20167at 185.664 kb on - strand, within SM_b20167at 185.711 kb on - strand, within SM_b20167

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
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183,510 + SM_b20164 0.68 +0.5
183,510 + SM_b20164 0.68 -0.6
183,511 - SM_b20164 0.68 -1.7
183,513 - SM_b20164 0.68 +1.0
183,568 + SM_b20164 0.71 +1.8
183,569 - SM_b20164 0.71 +0.9
183,569 - SM_b20164 0.71 -2.5
183,574 + SM_b20164 0.71 +1.3
183,574 + SM_b20164 0.71 +0.6
183,575 - SM_b20164 0.71 -1.7
183,575 - SM_b20164 0.71 +0.0
183,575 - SM_b20164 0.71 +0.5
183,595 + SM_b20164 0.72 +1.7
184,006 - +0.3
184,034 - +1.3
184,267 + -2.0
184,268 - +0.6
184,332 + -0.8
184,332 + -1.5
184,399 + SM_b20165 0.11 +0.3
184,484 - SM_b20165 0.23 +1.8
184,484 - SM_b20165 0.23 +0.5
184,576 + SM_b20165 0.37 -0.1
184,577 - SM_b20165 0.37 +0.2
184,609 + SM_b20165 0.42 -0.5
184,610 - SM_b20165 0.42 +1.0
184,699 + SM_b20165 0.55 -0.4
184,699 + SM_b20165 0.55 +0.5
184,699 + SM_b20165 0.55 -0.3
184,699 + SM_b20165 0.55 +1.4
184,897 + SM_b20165 0.85 -0.2
184,900 + SM_b20165 0.85 +1.0
184,900 + SM_b20165 0.85 -1.7
185,106 + SM_b20166 0.31 -0.6
185,106 + SM_b20166 0.31 -0.5
185,106 + SM_b20166 0.31 +1.4
185,149 + SM_b20166 0.44 -1.2
185,208 + SM_b20166 0.60 -1.0
185,208 + SM_b20166 0.60 +0.1
185,208 + SM_b20166 0.60 -0.5
185,209 - SM_b20166 0.60 +4.0
185,209 - SM_b20166 0.60 -0.6
185,346 + +0.7
185,472 + -1.2
185,517 - SM_b20167 0.12 +0.1
185,517 - SM_b20167 0.12 +0.5
185,517 - SM_b20167 0.12 +0.4
185,517 - SM_b20167 0.12 -2.0
185,517 - SM_b20167 0.12 +0.6
185,663 + SM_b20167 0.30 -0.1
185,664 - SM_b20167 0.30 +0.2
185,664 - SM_b20167 0.30 +0.0
185,711 - SM_b20167 0.36 -0.5

Or see this region's nucleotide sequence