Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20015

Experiment: L-Histidine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20014 and SM_b20015 are separated by 13 nucleotidesSM_b20015 and SM_b20016 overlap by 4 nucleotidesSM_b20016 and SM_b20017 overlap by 1 nucleotides SM_b20014: SM_b20014 - transcriptional regulator, at 20,377 to 21,378 _b20014 SM_b20015: SM_b20015 - sugar ABC transporter permease, at 21,392 to 22,348 _b20015 SM_b20016: SM_b20016 - sugar ABC transporter permease, at 22,345 to 23,337 _b20016 SM_b20017: SM_b20017 - sugar ABC transporter ATP-binding protein, at 23,337 to 24,842 _b20017 Position (kb) 21 22 23Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 20.537 kb on + strand, within SM_b20014at 20.537 kb on + strand, within SM_b20014at 20.537 kb on + strand, within SM_b20014at 20.537 kb on + strand, within SM_b20014at 20.555 kb on + strand, within SM_b20014at 20.556 kb on - strand, within SM_b20014at 20.837 kb on - strand, within SM_b20014at 20.838 kb on + strand, within SM_b20014at 20.838 kb on + strand, within SM_b20014at 20.839 kb on - strand, within SM_b20014at 20.839 kb on - strand, within SM_b20014at 21.150 kb on - strand, within SM_b20014at 21.237 kb on - strand, within SM_b20014at 21.421 kb on - strandat 21.421 kb on - strandat 21.612 kb on + strand, within SM_b20015at 21.612 kb on + strand, within SM_b20015at 21.613 kb on - strand, within SM_b20015at 21.613 kb on - strand, within SM_b20015at 21.613 kb on - strand, within SM_b20015at 21.613 kb on - strand, within SM_b20015at 21.649 kb on - strand, within SM_b20015at 21.741 kb on + strand, within SM_b20015at 21.741 kb on + strand, within SM_b20015at 21.741 kb on + strand, within SM_b20015at 21.742 kb on - strand, within SM_b20015at 21.742 kb on - strand, within SM_b20015at 21.742 kb on - strand, within SM_b20015at 21.771 kb on + strand, within SM_b20015at 21.772 kb on - strand, within SM_b20015at 21.772 kb on - strand, within SM_b20015at 22.279 kb on - strandat 22.559 kb on + strand, within SM_b20016at 22.655 kb on + strand, within SM_b20016at 22.655 kb on + strand, within SM_b20016at 22.656 kb on - strand, within SM_b20016at 22.794 kb on - strand, within SM_b20016at 22.794 kb on - strand, within SM_b20016at 22.794 kb on - strand, within SM_b20016at 23.127 kb on - strand, within SM_b20016at 23.160 kb on + strand, within SM_b20016at 23.161 kb on - strand, within SM_b20016at 23.162 kb on + strand, within SM_b20016at 23.162 kb on + strand, within SM_b20016at 23.163 kb on - strand, within SM_b20016at 23.163 kb on - strand, within SM_b20016at 23.163 kb on - strand, within SM_b20016

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (N)
remove
20,537 + SM_b20014 0.16 +1.1
20,537 + SM_b20014 0.16 +0.0
20,537 + SM_b20014 0.16 -0.3
20,537 + SM_b20014 0.16 -0.9
20,555 + SM_b20014 0.18 +1.4
20,556 - SM_b20014 0.18 +0.1
20,837 - SM_b20014 0.46 +0.6
20,838 + SM_b20014 0.46 -3.3
20,838 + SM_b20014 0.46 -2.5
20,839 - SM_b20014 0.46 -1.0
20,839 - SM_b20014 0.46 +1.1
21,150 - SM_b20014 0.77 +0.1
21,237 - SM_b20014 0.86 -0.8
21,421 - +0.7
21,421 - +0.3
21,612 + SM_b20015 0.23 +0.7
21,612 + SM_b20015 0.23 -1.9
21,613 - SM_b20015 0.23 -0.5
21,613 - SM_b20015 0.23 +0.4
21,613 - SM_b20015 0.23 +0.3
21,613 - SM_b20015 0.23 -0.6
21,649 - SM_b20015 0.27 -1.7
21,741 + SM_b20015 0.36 -0.7
21,741 + SM_b20015 0.36 +0.2
21,741 + SM_b20015 0.36 -3.2
21,742 - SM_b20015 0.37 +0.2
21,742 - SM_b20015 0.37 -1.0
21,742 - SM_b20015 0.37 -1.7
21,771 + SM_b20015 0.40 -0.7
21,772 - SM_b20015 0.40 -0.1
21,772 - SM_b20015 0.40 -4.3
22,279 - +2.0
22,559 + SM_b20016 0.22 -0.5
22,655 + SM_b20016 0.31 -0.1
22,655 + SM_b20016 0.31 -2.8
22,656 - SM_b20016 0.31 -2.9
22,794 - SM_b20016 0.45 -0.8
22,794 - SM_b20016 0.45 -0.5
22,794 - SM_b20016 0.45 -1.6
23,127 - SM_b20016 0.79 -3.4
23,160 + SM_b20016 0.82 -1.6
23,161 - SM_b20016 0.82 -0.0
23,162 + SM_b20016 0.82 +2.0
23,162 + SM_b20016 0.82 -0.7
23,163 - SM_b20016 0.82 -1.9
23,163 - SM_b20016 0.82 -1.5
23,163 - SM_b20016 0.82 -1.4

Or see this region's nucleotide sequence