Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25840

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS25835 and RR42_RS25840 are separated by 4 nucleotidesRR42_RS25840 and RR42_RS25845 are separated by 637 nucleotides RR42_RS25835: RR42_RS25835 - cytochrome D ubiquinol oxidase subunit I, at 1,134,874 to 1,136,253 _RS25835 RR42_RS25840: RR42_RS25840 - ArsR family transcriptional regulator, at 1,136,258 to 1,136,875 _RS25840 RR42_RS25845: RR42_RS25845 - isocitrate lyase, at 1,137,513 to 1,139,093 _RS25845 Position (kb) 1136 1137Strain fitness (log2 ratio) -2 -1 0 1 2at 1135.371 kb on - strand, within RR42_RS25835at 1135.692 kb on + strand, within RR42_RS25835at 1135.693 kb on - strand, within RR42_RS25835at 1135.693 kb on - strand, within RR42_RS25835at 1135.693 kb on - strand, within RR42_RS25835at 1135.693 kb on - strand, within RR42_RS25835at 1135.866 kb on + strand, within RR42_RS25835at 1135.867 kb on - strand, within RR42_RS25835at 1135.992 kb on + strand, within RR42_RS25835at 1135.992 kb on + strand, within RR42_RS25835at 1135.995 kb on - strand, within RR42_RS25835at 1136.121 kb on + strandat 1136.121 kb on + strandat 1136.122 kb on - strandat 1136.259 kb on + strandat 1136.260 kb on - strandat 1136.469 kb on + strand, within RR42_RS25840at 1136.470 kb on - strand, within RR42_RS25840at 1136.470 kb on - strand, within RR42_RS25840at 1136.470 kb on - strand, within RR42_RS25840at 1136.470 kb on - strand, within RR42_RS25840at 1136.631 kb on + strand, within RR42_RS25840at 1136.632 kb on - strand, within RR42_RS25840at 1136.784 kb on + strand, within RR42_RS25840at 1136.784 kb on + strand, within RR42_RS25840at 1136.785 kb on - strand, within RR42_RS25840at 1136.914 kb on - strandat 1137.035 kb on + strandat 1137.217 kb on + strandat 1137.217 kb on + strandat 1137.217 kb on + strandat 1137.217 kb on + strandat 1137.218 kb on - strandat 1137.218 kb on - strandat 1137.253 kb on + strandat 1137.253 kb on + strandat 1137.433 kb on + strandat 1137.434 kb on - strandat 1137.501 kb on + strandat 1137.597 kb on + strandat 1137.654 kb on + strandat 1137.711 kb on + strand, within RR42_RS25845at 1137.711 kb on + strand, within RR42_RS25845at 1137.711 kb on + strand, within RR42_RS25845at 1137.711 kb on + strand, within RR42_RS25845at 1137.712 kb on - strand, within RR42_RS25845at 1137.807 kb on + strand, within RR42_RS25845at 1137.807 kb on + strand, within RR42_RS25845at 1137.808 kb on - strand, within RR42_RS25845

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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1,135,371 - RR42_RS25835 0.36 +0.8
1,135,692 + RR42_RS25835 0.59 -0.1
1,135,693 - RR42_RS25835 0.59 +1.5
1,135,693 - RR42_RS25835 0.59 +1.2
1,135,693 - RR42_RS25835 0.59 +1.0
1,135,693 - RR42_RS25835 0.59 -2.1
1,135,866 + RR42_RS25835 0.72 +1.9
1,135,867 - RR42_RS25835 0.72 +0.8
1,135,992 + RR42_RS25835 0.81 +0.2
1,135,992 + RR42_RS25835 0.81 +0.4
1,135,995 - RR42_RS25835 0.81 -0.0
1,136,121 + -0.3
1,136,121 + +2.4
1,136,122 - -0.5
1,136,259 + +0.2
1,136,260 - -0.9
1,136,469 + RR42_RS25840 0.34 +0.0
1,136,470 - RR42_RS25840 0.34 -1.0
1,136,470 - RR42_RS25840 0.34 +0.7
1,136,470 - RR42_RS25840 0.34 +0.2
1,136,470 - RR42_RS25840 0.34 -0.3
1,136,631 + RR42_RS25840 0.60 +1.8
1,136,632 - RR42_RS25840 0.61 +0.4
1,136,784 + RR42_RS25840 0.85 +1.2
1,136,784 + RR42_RS25840 0.85 -0.3
1,136,785 - RR42_RS25840 0.85 +0.2
1,136,914 - -0.1
1,137,035 + -0.4
1,137,217 + +0.4
1,137,217 + +0.3
1,137,217 + +0.3
1,137,217 + -0.1
1,137,218 - -0.6
1,137,218 - +1.2
1,137,253 + +0.8
1,137,253 + +0.3
1,137,433 + -2.3
1,137,434 - +1.8
1,137,501 + -0.8
1,137,597 + +0.2
1,137,654 + +0.1
1,137,711 + RR42_RS25845 0.13 -0.4
1,137,711 + RR42_RS25845 0.13 -1.8
1,137,711 + RR42_RS25845 0.13 +1.1
1,137,711 + RR42_RS25845 0.13 -1.4
1,137,712 - RR42_RS25845 0.13 -0.5
1,137,807 + RR42_RS25845 0.19 +0.4
1,137,807 + RR42_RS25845 0.19 +0.8
1,137,808 - RR42_RS25845 0.19 +0.8

Or see this region's nucleotide sequence