Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24735 and RR42_RS24740 are separated by 929 nucleotides RR42_RS24740 and RR42_RS24745 are separated by 99 nucleotides RR42_RS24745 and RR42_RS24750 are separated by 251 nucleotides
RR42_RS24735: RR42_RS24735 - membrane protein, at 885,851 to 886,942
_RS24735
RR42_RS24740: RR42_RS24740 - hydrolase, at 887,872 to 888,567
_RS24740
RR42_RS24745: RR42_RS24745 - hypothetical protein, at 888,667 to 889,308
_RS24745
RR42_RS24750: RR42_RS24750 - LysR family transcriptional regulator, at 889,560 to 889,904
_RS24750
Position (kb) 887
888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 886.935 kb on + strand at 886.967 kb on + strand at 886.968 kb on - strand at 886.969 kb on + strand at 887.004 kb on - strand at 887.021 kb on - strand at 887.189 kb on - strand at 887.189 kb on - strand at 887.287 kb on + strand at 887.351 kb on - strand at 887.376 kb on + strand at 887.376 kb on + strand at 887.376 kb on + strand at 887.377 kb on - strand at 887.404 kb on + strand at 887.408 kb on - strand at 887.408 kb on - strand at 887.408 kb on - strand at 887.541 kb on + strand at 887.542 kb on - strand at 887.557 kb on + strand at 887.558 kb on - strand at 887.558 kb on - strand at 887.558 kb on - strand at 887.596 kb on + strand at 887.597 kb on - strand at 887.597 kb on - strand at 887.597 kb on - strand at 887.671 kb on - strand at 887.702 kb on + strand at 887.703 kb on - strand at 887.744 kb on - strand at 887.756 kb on - strand at 887.756 kb on - strand at 887.756 kb on - strand at 887.756 kb on - strand at 887.756 kb on - strand at 887.756 kb on - strand at 887.860 kb on + strand at 887.918 kb on + strand at 887.959 kb on - strand, within RR42_RS24740 at 887.960 kb on + strand, within RR42_RS24740 at 887.960 kb on + strand, within RR42_RS24740 at 887.975 kb on - strand, within RR42_RS24740 at 888.052 kb on + strand, within RR42_RS24740 at 888.053 kb on - strand, within RR42_RS24740 at 888.170 kb on - strand, within RR42_RS24740 at 888.170 kb on - strand, within RR42_RS24740 at 888.202 kb on + strand, within RR42_RS24740 at 888.202 kb on + strand, within RR42_RS24740 at 888.203 kb on - strand, within RR42_RS24740 at 888.203 kb on - strand, within RR42_RS24740 at 888.299 kb on + strand, within RR42_RS24740 at 888.303 kb on - strand, within RR42_RS24740 at 888.324 kb on + strand, within RR42_RS24740 at 888.324 kb on + strand, within RR42_RS24740 at 888.324 kb on + strand, within RR42_RS24740 at 888.324 kb on + strand, within RR42_RS24740 at 888.324 kb on + strand, within RR42_RS24740 at 888.325 kb on - strand, within RR42_RS24740 at 888.325 kb on - strand, within RR42_RS24740 at 888.325 kb on - strand, within RR42_RS24740 at 888.373 kb on - strand, within RR42_RS24740 at 888.373 kb on - strand, within RR42_RS24740 at 888.417 kb on + strand, within RR42_RS24740 at 888.417 kb on + strand, within RR42_RS24740 at 888.417 kb on + strand, within RR42_RS24740 at 888.573 kb on + strand at 888.573 kb on + strand at 888.574 kb on - strand at 888.574 kb on - strand at 888.574 kb on - strand at 888.636 kb on - strand at 888.636 kb on - strand at 888.636 kb on - strand at 888.636 kb on - strand at 888.663 kb on - strand at 888.755 kb on + strand, within RR42_RS24745 at 888.756 kb on - strand, within RR42_RS24745 at 888.756 kb on - strand, within RR42_RS24745 at 888.756 kb on - strand, within RR42_RS24745 at 888.895 kb on + strand, within RR42_RS24745 at 888.908 kb on + strand, within RR42_RS24745 at 888.909 kb on - strand, within RR42_RS24745 at 889.024 kb on - strand, within RR42_RS24745 at 889.134 kb on - strand, within RR42_RS24745 at 889.137 kb on - strand, within RR42_RS24745 at 889.137 kb on - strand, within RR42_RS24745 at 889.137 kb on - strand, within RR42_RS24745 at 889.169 kb on + strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.170 kb on - strand, within RR42_RS24745 at 889.366 kb on - strand at 889.373 kb on + strand at 889.373 kb on + strand at 889.446 kb on + strand at 889.446 kb on + strand at 889.447 kb on - strand at 889.459 kb on + strand at 889.470 kb on + strand at 889.521 kb on + strand at 889.521 kb on + strand at 889.521 kb on + strand at 889.521 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 886,935 + -0.1 886,967 + +0.5 886,968 - -0.0 886,969 + +0.4 887,004 - -0.6 887,021 - +0.4 887,189 - +0.7 887,189 - -0.1 887,287 + -0.5 887,351 - -0.7 887,376 + -0.1 887,376 + -0.7 887,376 + -2.2 887,377 - +0.3 887,404 + -0.7 887,408 - -0.9 887,408 - -0.5 887,408 - -1.8 887,541 + -0.9 887,542 - +2.0 887,557 + +1.1 887,558 - -0.4 887,558 - -0.0 887,558 - +0.0 887,596 + +1.6 887,597 - -0.7 887,597 - -1.3 887,597 - -0.4 887,671 - -1.0 887,702 + -1.2 887,703 - -0.9 887,744 - +0.9 887,756 - +1.4 887,756 - +0.5 887,756 - -0.0 887,756 - +0.7 887,756 - -0.0 887,756 - +1.2 887,860 + -0.0 887,918 + +0.4 887,959 - RR42_RS24740 0.12 -0.2 887,960 + RR42_RS24740 0.13 -0.6 887,960 + RR42_RS24740 0.13 -1.9 887,975 - RR42_RS24740 0.15 +0.3 888,052 + RR42_RS24740 0.26 +0.3 888,053 - RR42_RS24740 0.26 -0.4 888,170 - RR42_RS24740 0.43 +0.1 888,170 - RR42_RS24740 0.43 -0.1 888,202 + RR42_RS24740 0.47 -1.5 888,202 + RR42_RS24740 0.47 -1.6 888,203 - RR42_RS24740 0.48 +0.4 888,203 - RR42_RS24740 0.48 -0.5 888,299 + RR42_RS24740 0.61 -1.3 888,303 - RR42_RS24740 0.62 -0.2 888,324 + RR42_RS24740 0.65 -0.9 888,324 + RR42_RS24740 0.65 -1.7 888,324 + RR42_RS24740 0.65 -0.7 888,324 + RR42_RS24740 0.65 +1.0 888,324 + RR42_RS24740 0.65 +0.3 888,325 - RR42_RS24740 0.65 +0.4 888,325 - RR42_RS24740 0.65 -0.4 888,325 - RR42_RS24740 0.65 -0.5 888,373 - RR42_RS24740 0.72 +0.3 888,373 - RR42_RS24740 0.72 -0.6 888,417 + RR42_RS24740 0.78 +0.9 888,417 + RR42_RS24740 0.78 +0.9 888,417 + RR42_RS24740 0.78 -0.3 888,573 + -1.0 888,573 + +0.6 888,574 - -0.5 888,574 - +1.2 888,574 - -0.2 888,636 - -0.7 888,636 - -0.5 888,636 - -0.0 888,636 - +0.6 888,663 - -1.0 888,755 + RR42_RS24745 0.14 -0.0 888,756 - RR42_RS24745 0.14 +1.9 888,756 - RR42_RS24745 0.14 +1.2 888,756 - RR42_RS24745 0.14 +0.4 888,895 + RR42_RS24745 0.36 +0.1 888,908 + RR42_RS24745 0.38 -0.6 888,909 - RR42_RS24745 0.38 -0.6 889,024 - RR42_RS24745 0.56 -3.3 889,134 - RR42_RS24745 0.73 -0.1 889,137 - RR42_RS24745 0.73 +0.5 889,137 - RR42_RS24745 0.73 -1.7 889,137 - RR42_RS24745 0.73 -0.3 889,169 + RR42_RS24745 0.78 -0.7 889,170 - RR42_RS24745 0.78 +0.9 889,170 - RR42_RS24745 0.78 +0.4 889,170 - RR42_RS24745 0.78 -2.3 889,170 - RR42_RS24745 0.78 -0.0 889,366 - -2.7 889,373 + +0.3 889,373 + -0.3 889,446 + -0.7 889,446 + -2.5 889,447 - -0.1 889,459 + +0.1 889,470 + -1.8 889,521 + -0.5 889,521 + +1.1 889,521 + -1.5 889,521 + +0.8
Or see this region's nucleotide sequence