Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23015

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23005 and RR42_RS23010 are separated by 289 nucleotidesRR42_RS23010 and RR42_RS23015 are separated by 163 nucleotidesRR42_RS23015 and RR42_RS23020 are separated by 4 nucleotides RR42_RS23005: RR42_RS23005 - hypothetical protein, at 496,800 to 497,303 _RS23005 RR42_RS23010: RR42_RS23010 - hypothetical protein, at 497,593 to 498,051 _RS23010 RR42_RS23015: RR42_RS23015 - hypothetical protein, at 498,215 to 498,757 _RS23015 RR42_RS23020: RR42_RS23020 - ABC transporter substrate-binding protein, at 498,762 to 499,742 _RS23020 Position (kb) 498 499Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 497.238 kb on + strand, within RR42_RS23005at 497.402 kb on - strandat 497.508 kb on + strandat 497.508 kb on + strandat 497.652 kb on - strand, within RR42_RS23010at 497.652 kb on - strand, within RR42_RS23010at 497.652 kb on - strand, within RR42_RS23010at 497.904 kb on - strand, within RR42_RS23010at 497.904 kb on - strand, within RR42_RS23010at 497.904 kb on - strand, within RR42_RS23010at 497.904 kb on - strand, within RR42_RS23010at 497.937 kb on - strand, within RR42_RS23010at 498.151 kb on + strandat 498.151 kb on + strandat 498.151 kb on + strandat 498.365 kb on + strand, within RR42_RS23015at 498.371 kb on + strand, within RR42_RS23015at 498.372 kb on - strand, within RR42_RS23015at 498.372 kb on - strand, within RR42_RS23015at 498.415 kb on + strand, within RR42_RS23015at 498.415 kb on + strand, within RR42_RS23015at 498.499 kb on + strand, within RR42_RS23015at 498.499 kb on + strand, within RR42_RS23015at 498.500 kb on - strand, within RR42_RS23015at 498.500 kb on - strand, within RR42_RS23015at 498.510 kb on + strand, within RR42_RS23015at 498.510 kb on + strand, within RR42_RS23015at 498.510 kb on + strand, within RR42_RS23015at 498.510 kb on + strand, within RR42_RS23015at 498.511 kb on - strand, within RR42_RS23015at 498.511 kb on - strand, within RR42_RS23015at 498.511 kb on - strand, within RR42_RS23015at 498.511 kb on - strand, within RR42_RS23015at 498.511 kb on - strand, within RR42_RS23015at 498.555 kb on - strand, within RR42_RS23015at 498.555 kb on - strand, within RR42_RS23015at 498.586 kb on - strand, within RR42_RS23015at 498.699 kb on - strand, within RR42_RS23015at 498.979 kb on + strand, within RR42_RS23020at 498.979 kb on + strand, within RR42_RS23020at 498.980 kb on - strand, within RR42_RS23020at 498.997 kb on + strand, within RR42_RS23020at 499.180 kb on + strand, within RR42_RS23020at 499.180 kb on + strand, within RR42_RS23020at 499.181 kb on - strand, within RR42_RS23020at 499.267 kb on + strand, within RR42_RS23020at 499.267 kb on + strand, within RR42_RS23020at 499.267 kb on + strand, within RR42_RS23020at 499.267 kb on + strand, within RR42_RS23020at 499.267 kb on + strand, within RR42_RS23020at 499.268 kb on - strand, within RR42_RS23020at 499.268 kb on - strand, within RR42_RS23020at 499.272 kb on + strand, within RR42_RS23020at 499.273 kb on - strand, within RR42_RS23020at 499.273 kb on - strand, within RR42_RS23020at 499.364 kb on - strand, within RR42_RS23020at 499.412 kb on + strand, within RR42_RS23020at 499.413 kb on - strand, within RR42_RS23020at 499.413 kb on - strand, within RR42_RS23020at 499.413 kb on - strand, within RR42_RS23020at 499.511 kb on + strand, within RR42_RS23020

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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497,238 + RR42_RS23005 0.87 +0.1
497,402 - -0.8
497,508 + +0.6
497,508 + -0.3
497,652 - RR42_RS23010 0.13 -0.1
497,652 - RR42_RS23010 0.13 +0.0
497,652 - RR42_RS23010 0.13 -1.9
497,904 - RR42_RS23010 0.68 +0.6
497,904 - RR42_RS23010 0.68 -0.6
497,904 - RR42_RS23010 0.68 +0.2
497,904 - RR42_RS23010 0.68 +0.2
497,937 - RR42_RS23010 0.75 +0.4
498,151 + +0.7
498,151 + -0.0
498,151 + +0.0
498,365 + RR42_RS23015 0.28 +0.0
498,371 + RR42_RS23015 0.29 -0.6
498,372 - RR42_RS23015 0.29 -0.4
498,372 - RR42_RS23015 0.29 +1.0
498,415 + RR42_RS23015 0.37 +0.5
498,415 + RR42_RS23015 0.37 -1.7
498,499 + RR42_RS23015 0.52 -3.3
498,499 + RR42_RS23015 0.52 -0.0
498,500 - RR42_RS23015 0.52 +0.4
498,500 - RR42_RS23015 0.52 +1.2
498,510 + RR42_RS23015 0.54 -0.6
498,510 + RR42_RS23015 0.54 -2.3
498,510 + RR42_RS23015 0.54 +0.1
498,510 + RR42_RS23015 0.54 -0.7
498,511 - RR42_RS23015 0.55 -0.8
498,511 - RR42_RS23015 0.55 -0.5
498,511 - RR42_RS23015 0.55 -0.5
498,511 - RR42_RS23015 0.55 -1.7
498,511 - RR42_RS23015 0.55 -1.4
498,555 - RR42_RS23015 0.63 -1.4
498,555 - RR42_RS23015 0.63 -1.2
498,586 - RR42_RS23015 0.68 -0.0
498,699 - RR42_RS23015 0.89 -0.3
498,979 + RR42_RS23020 0.22 +0.4
498,979 + RR42_RS23020 0.22 -1.8
498,980 - RR42_RS23020 0.22 +2.7
498,997 + RR42_RS23020 0.24 -0.4
499,180 + RR42_RS23020 0.43 -1.8
499,180 + RR42_RS23020 0.43 +0.2
499,181 - RR42_RS23020 0.43 -1.3
499,267 + RR42_RS23020 0.51 +1.2
499,267 + RR42_RS23020 0.51 +0.9
499,267 + RR42_RS23020 0.51 +0.3
499,267 + RR42_RS23020 0.51 -0.1
499,267 + RR42_RS23020 0.51 -1.2
499,268 - RR42_RS23020 0.52 +0.6
499,268 - RR42_RS23020 0.52 -0.8
499,272 + RR42_RS23020 0.52 -0.5
499,273 - RR42_RS23020 0.52 -0.8
499,273 - RR42_RS23020 0.52 -0.1
499,364 - RR42_RS23020 0.61 +0.2
499,412 + RR42_RS23020 0.66 -0.5
499,413 - RR42_RS23020 0.66 +1.2
499,413 - RR42_RS23020 0.66 -0.2
499,413 - RR42_RS23020 0.66 -1.0
499,511 + RR42_RS23020 0.76 +0.2

Or see this region's nucleotide sequence