Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21230 and RR42_RS21235 are separated by 70 nucleotides RR42_RS21235 and RR42_RS21240 are separated by 571 nucleotides
RR42_RS21230: RR42_RS21230 - ABC transporter substrate-binding protein, at 88,047 to 89,039
_RS21230
RR42_RS21235: RR42_RS21235 - thymidine phosphorylase, at 89,110 to 91,149
_RS21235
RR42_RS21240: RR42_RS21240 - MarR family transcriptional regulator, at 91,721 to 92,266
_RS21240
Position (kb) 89
90
91
92 Strain fitness (log2 ratio) -2
-1
0
1 at 88.282 kb on + strand, within RR42_RS21230 at 88.283 kb on - strand, within RR42_RS21230 at 88.384 kb on + strand, within RR42_RS21230 at 88.384 kb on + strand, within RR42_RS21230 at 88.384 kb on + strand, within RR42_RS21230 at 88.385 kb on - strand, within RR42_RS21230 at 88.468 kb on + strand, within RR42_RS21230 at 88.468 kb on + strand, within RR42_RS21230 at 88.555 kb on + strand, within RR42_RS21230 at 88.556 kb on - strand, within RR42_RS21230 at 88.556 kb on - strand, within RR42_RS21230 at 88.556 kb on - strand, within RR42_RS21230 at 88.751 kb on + strand, within RR42_RS21230 at 88.751 kb on + strand, within RR42_RS21230 at 88.751 kb on + strand, within RR42_RS21230 at 88.751 kb on + strand, within RR42_RS21230 at 88.751 kb on + strand, within RR42_RS21230 at 88.751 kb on + strand, within RR42_RS21230 at 88.752 kb on - strand, within RR42_RS21230 at 88.752 kb on - strand, within RR42_RS21230 at 88.752 kb on - strand, within RR42_RS21230 at 88.752 kb on - strand, within RR42_RS21230 at 88.753 kb on + strand, within RR42_RS21230 at 88.754 kb on - strand, within RR42_RS21230 at 88.780 kb on + strand, within RR42_RS21230 at 88.780 kb on + strand, within RR42_RS21230 at 88.781 kb on - strand, within RR42_RS21230 at 88.794 kb on - strand, within RR42_RS21230 at 89.019 kb on + strand at 89.019 kb on + strand at 89.068 kb on + strand at 89.068 kb on + strand at 89.068 kb on + strand at 89.069 kb on - strand at 89.069 kb on - strand at 89.111 kb on + strand at 89.112 kb on - strand at 89.584 kb on + strand, within RR42_RS21235 at 89.584 kb on + strand, within RR42_RS21235 at 89.585 kb on - strand, within RR42_RS21235 at 89.585 kb on - strand, within RR42_RS21235 at 90.249 kb on + strand, within RR42_RS21235 at 90.250 kb on - strand, within RR42_RS21235 at 90.250 kb on - strand, within RR42_RS21235 at 90.288 kb on - strand, within RR42_RS21235 at 90.376 kb on - strand, within RR42_RS21235 at 90.542 kb on + strand, within RR42_RS21235 at 90.542 kb on + strand, within RR42_RS21235 at 90.542 kb on + strand, within RR42_RS21235 at 90.542 kb on + strand, within RR42_RS21235 at 90.542 kb on + strand, within RR42_RS21235 at 90.543 kb on - strand, within RR42_RS21235 at 90.543 kb on - strand, within RR42_RS21235 at 90.543 kb on - strand, within RR42_RS21235 at 90.909 kb on - strand, within RR42_RS21235 at 91.042 kb on + strand at 91.042 kb on + strand at 91.042 kb on + strand at 91.043 kb on - strand at 91.046 kb on + strand at 91.046 kb on + strand at 91.046 kb on + strand at 91.047 kb on - strand at 91.336 kb on + strand at 91.383 kb on + strand at 91.635 kb on + strand at 91.636 kb on - strand at 91.636 kb on - strand at 91.636 kb on - strand at 91.720 kb on + strand at 91.720 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 88,282 + RR42_RS21230 0.24 -0.3 88,283 - RR42_RS21230 0.24 -1.3 88,384 + RR42_RS21230 0.34 +1.3 88,384 + RR42_RS21230 0.34 -0.3 88,384 + RR42_RS21230 0.34 -0.4 88,385 - RR42_RS21230 0.34 +0.3 88,468 + RR42_RS21230 0.42 -1.6 88,468 + RR42_RS21230 0.42 -1.5 88,555 + RR42_RS21230 0.51 +1.0 88,556 - RR42_RS21230 0.51 -0.7 88,556 - RR42_RS21230 0.51 -0.4 88,556 - RR42_RS21230 0.51 -1.9 88,751 + RR42_RS21230 0.71 +1.3 88,751 + RR42_RS21230 0.71 -0.3 88,751 + RR42_RS21230 0.71 +0.3 88,751 + RR42_RS21230 0.71 +0.2 88,751 + RR42_RS21230 0.71 -0.1 88,751 + RR42_RS21230 0.71 +0.2 88,752 - RR42_RS21230 0.71 +1.3 88,752 - RR42_RS21230 0.71 +0.2 88,752 - RR42_RS21230 0.71 -0.6 88,752 - RR42_RS21230 0.71 +0.2 88,753 + RR42_RS21230 0.71 -0.9 88,754 - RR42_RS21230 0.71 -0.3 88,780 + RR42_RS21230 0.74 +0.5 88,780 + RR42_RS21230 0.74 +0.2 88,781 - RR42_RS21230 0.74 -0.5 88,794 - RR42_RS21230 0.75 +0.4 89,019 + +0.4 89,019 + +0.1 89,068 + -1.1 89,068 + -0.7 89,068 + -1.6 89,069 - -0.6 89,069 - +0.1 89,111 + +1.1 89,112 - +0.8 89,584 + RR42_RS21235 0.23 -0.7 89,584 + RR42_RS21235 0.23 -0.5 89,585 - RR42_RS21235 0.23 -1.1 89,585 - RR42_RS21235 0.23 -1.6 90,249 + RR42_RS21235 0.56 -0.5 90,250 - RR42_RS21235 0.56 +0.0 90,250 - RR42_RS21235 0.56 -0.3 90,288 - RR42_RS21235 0.58 -0.1 90,376 - RR42_RS21235 0.62 -2.2 90,542 + RR42_RS21235 0.70 -0.5 90,542 + RR42_RS21235 0.70 -0.1 90,542 + RR42_RS21235 0.70 -0.2 90,542 + RR42_RS21235 0.70 -0.3 90,542 + RR42_RS21235 0.70 -2.7 90,543 - RR42_RS21235 0.70 +0.3 90,543 - RR42_RS21235 0.70 -0.3 90,543 - RR42_RS21235 0.70 -0.1 90,909 - RR42_RS21235 0.88 -0.8 91,042 + +0.2 91,042 + -0.7 91,042 + +0.7 91,043 - -0.2 91,046 + -0.1 91,046 + -1.2 91,046 + +0.5 91,047 - +1.4 91,336 + +0.3 91,383 + +0.9 91,635 + -0.8 91,636 - -0.4 91,636 - +0.2 91,636 - -0.7 91,720 + +1.6 91,720 + -1.2
Or see this region's nucleotide sequence