Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09390

Experiment: casaminos (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09385 and RR42_RS09390 are separated by 311 nucleotidesRR42_RS09390 and RR42_RS09395 are separated by 111 nucleotides RR42_RS09385: RR42_RS09385 - hypothetical protein, at 1,986,194 to 1,987,141 _RS09385 RR42_RS09390: RR42_RS09390 - LuxR family transcriptional regulator, at 1,987,453 to 1,990,155 _RS09390 RR42_RS09395: RR42_RS09395 - multidrug transporter MatE, at 1,990,267 to 1,991,580 _RS09395 Position (kb) 1987 1988 1989 1990 1991Strain fitness (log2 ratio) -2 -1 0 1at 1986.612 kb on + strand, within RR42_RS09385at 1986.717 kb on + strand, within RR42_RS09385at 1986.718 kb on - strand, within RR42_RS09385at 1986.806 kb on + strand, within RR42_RS09385at 1986.807 kb on - strand, within RR42_RS09385at 1986.807 kb on - strand, within RR42_RS09385at 1987.173 kb on - strandat 1987.205 kb on + strandat 1987.272 kb on + strandat 1987.367 kb on + strandat 1987.654 kb on + strandat 1987.924 kb on + strand, within RR42_RS09390at 1987.925 kb on - strand, within RR42_RS09390at 1987.925 kb on - strand, within RR42_RS09390at 1987.933 kb on - strand, within RR42_RS09390at 1988.257 kb on - strand, within RR42_RS09390at 1988.257 kb on - strand, within RR42_RS09390at 1988.608 kb on + strand, within RR42_RS09390at 1988.632 kb on + strand, within RR42_RS09390at 1988.863 kb on + strand, within RR42_RS09390at 1988.993 kb on - strand, within RR42_RS09390at 1989.056 kb on - strand, within RR42_RS09390at 1989.095 kb on - strand, within RR42_RS09390at 1989.223 kb on + strand, within RR42_RS09390at 1989.224 kb on - strand, within RR42_RS09390at 1989.240 kb on - strand, within RR42_RS09390at 1989.240 kb on - strand, within RR42_RS09390at 1989.391 kb on + strand, within RR42_RS09390at 1989.463 kb on - strand, within RR42_RS09390at 1989.595 kb on + strand, within RR42_RS09390at 1989.747 kb on + strand, within RR42_RS09390at 1989.747 kb on + strand, within RR42_RS09390at 1989.843 kb on + strand, within RR42_RS09390at 1989.844 kb on - strand, within RR42_RS09390at 1989.906 kb on - strandat 1990.526 kb on + strand, within RR42_RS09395at 1990.527 kb on - strand, within RR42_RS09395at 1990.598 kb on + strand, within RR42_RS09395at 1990.598 kb on + strand, within RR42_RS09395at 1990.599 kb on - strand, within RR42_RS09395at 1991.038 kb on + strand, within RR42_RS09395at 1991.038 kb on + strand, within RR42_RS09395at 1991.039 kb on - strand, within RR42_RS09395at 1991.042 kb on + strand, within RR42_RS09395at 1991.043 kb on - strand, within RR42_RS09395at 1991.049 kb on - strand, within RR42_RS09395at 1991.148 kb on - strand, within RR42_RS09395

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (N)
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1,986,612 + RR42_RS09385 0.44 +0.5
1,986,717 + RR42_RS09385 0.55 -0.0
1,986,718 - RR42_RS09385 0.55 -1.2
1,986,806 + RR42_RS09385 0.65 +0.3
1,986,807 - RR42_RS09385 0.65 +1.4
1,986,807 - RR42_RS09385 0.65 -0.3
1,987,173 - -0.2
1,987,205 + -1.2
1,987,272 + -0.4
1,987,367 + +1.5
1,987,654 + -2.6
1,987,924 + RR42_RS09390 0.17 -0.6
1,987,925 - RR42_RS09390 0.17 -2.1
1,987,925 - RR42_RS09390 0.17 -0.4
1,987,933 - RR42_RS09390 0.18 +0.1
1,988,257 - RR42_RS09390 0.30 -1.3
1,988,257 - RR42_RS09390 0.30 +0.3
1,988,608 + RR42_RS09390 0.43 -0.1
1,988,632 + RR42_RS09390 0.44 +0.2
1,988,863 + RR42_RS09390 0.52 -0.1
1,988,993 - RR42_RS09390 0.57 -1.2
1,989,056 - RR42_RS09390 0.59 -1.0
1,989,095 - RR42_RS09390 0.61 -1.0
1,989,223 + RR42_RS09390 0.65 +0.5
1,989,224 - RR42_RS09390 0.66 -0.8
1,989,240 - RR42_RS09390 0.66 +0.0
1,989,240 - RR42_RS09390 0.66 -0.5
1,989,391 + RR42_RS09390 0.72 -0.3
1,989,463 - RR42_RS09390 0.74 -0.1
1,989,595 + RR42_RS09390 0.79 -1.3
1,989,747 + RR42_RS09390 0.85 -0.5
1,989,747 + RR42_RS09390 0.85 -0.1
1,989,843 + RR42_RS09390 0.88 +1.1
1,989,844 - RR42_RS09390 0.88 -0.3
1,989,906 - -1.8
1,990,526 + RR42_RS09395 0.20 -1.6
1,990,527 - RR42_RS09395 0.20 -0.2
1,990,598 + RR42_RS09395 0.25 +0.2
1,990,598 + RR42_RS09395 0.25 -0.8
1,990,599 - RR42_RS09395 0.25 +0.4
1,991,038 + RR42_RS09395 0.59 +0.1
1,991,038 + RR42_RS09395 0.59 -0.2
1,991,039 - RR42_RS09395 0.59 +0.5
1,991,042 + RR42_RS09395 0.59 +0.0
1,991,043 - RR42_RS09395 0.59 -0.6
1,991,049 - RR42_RS09395 0.60 -0.0
1,991,148 - RR42_RS09395 0.67 -0.2

Or see this region's nucleotide sequence