Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04250 and RR42_RS04255 are separated by 66 nucleotides RR42_RS04255 and RR42_RS04260 are separated by 87 nucleotides RR42_RS04260 and RR42_RS04265 are separated by 85 nucleotides
RR42_RS04250: RR42_RS04250 - chemotaxis protein CheY, at 940,069 to 940,437
_RS04250
RR42_RS04255: RR42_RS04255 - chemotaxis protein CheW, at 940,504 to 941,091
_RS04255
RR42_RS04260: RR42_RS04260 - chemotaxis protein, at 941,179 to 943,347
_RS04260
RR42_RS04265: RR42_RS04265 - chemotaxis protein CheY, at 943,433 to 949,480
_RS04265
Position (kb) 941
942
943
944 Strain fitness (log2 ratio) -2
-1
0
1
2 at 940.256 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.376 kb on - strand, within RR42_RS04250 at 940.555 kb on + strand at 940.555 kb on + strand at 940.723 kb on + strand, within RR42_RS04255 at 940.723 kb on + strand, within RR42_RS04255 at 941.178 kb on + strand at 941.179 kb on - strand at 941.179 kb on - strand at 941.387 kb on - strand at 941.387 kb on - strand at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260 at 941.926 kb on - strand, within RR42_RS04260 at 942.265 kb on + strand, within RR42_RS04260 at 942.266 kb on - strand at 942.266 kb on - strand, within RR42_RS04260 at 942.478 kb on + strand, within RR42_RS04260 at 942.478 kb on + strand, within RR42_RS04260 at 942.479 kb on - strand, within RR42_RS04260 at 942.479 kb on - strand, within RR42_RS04260 at 942.479 kb on - strand, within RR42_RS04260 at 942.479 kb on - strand, within RR42_RS04260 at 943.200 kb on + strand at 943.218 kb on + strand at 943.219 kb on - strand at 943.317 kb on + strand at 943.756 kb on - strand at 943.782 kb on - strand at 943.889 kb on + strand at 943.890 kb on - strand at 944.153 kb on + strand, within RR42_RS04265 at 944.153 kb on + strand, within RR42_RS04265 at 944.153 kb on + strand, within RR42_RS04265 at 944.153 kb on + strand, within RR42_RS04265 at 944.185 kb on - strand, within RR42_RS04265
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 940,256 - RR42_RS04250 0.51 -1.2 940,376 - RR42_RS04250 0.83 -0.8 940,376 - RR42_RS04250 0.83 -0.4 940,376 - RR42_RS04250 0.83 -1.0 940,376 - RR42_RS04250 0.83 -0.1 940,555 + -0.4 940,555 + -1.2 940,723 + RR42_RS04255 0.37 -1.0 940,723 + RR42_RS04255 0.37 -0.8 941,178 + -0.7 941,179 - -1.0 941,179 - -0.7 941,387 - +0.2 941,387 - +0.0 941,926 - RR42_RS04260 0.34 -0.4 941,926 - RR42_RS04260 0.34 -1.2 941,926 - RR42_RS04260 0.34 -0.8 941,926 - RR42_RS04260 0.34 +0.2 941,926 - RR42_RS04260 0.34 -1.0 942,265 + RR42_RS04260 0.50 +0.0 942,266 - +1.0 942,266 - RR42_RS04260 0.50 -1.8 942,478 + RR42_RS04260 0.60 +0.8 942,478 + RR42_RS04260 0.60 -1.0 942,479 - RR42_RS04260 0.60 +0.4 942,479 - RR42_RS04260 0.60 -0.8 942,479 - RR42_RS04260 0.60 +2.0 942,479 - RR42_RS04260 0.60 -0.2 943,200 + +0.8 943,218 + -0.1 943,219 - -1.6 943,317 + -0.2 943,756 - -0.3 943,782 - -0.3 943,889 + -0.1 943,890 - -1.3 944,153 + RR42_RS04265 0.12 -1.7 944,153 + RR42_RS04265 0.12 -0.5 944,153 + RR42_RS04265 0.12 -0.6 944,153 + RR42_RS04265 0.12 +0.7 944,185 - RR42_RS04265 0.12 -0.4
Or see this region's nucleotide sequence