Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02910 and RR42_RS02915 are separated by 220 nucleotides RR42_RS02915 and RR42_RS02920 are separated by 51 nucleotides RR42_RS02920 and RR42_RS02925 are separated by 141 nucleotides
RR42_RS02910: RR42_RS02910 - 2-aminoadipate aminotransferase, at 648,964 to 650,214
_RS02910
RR42_RS02915: RR42_RS02915 - hypothetical protein, at 650,435 to 651,466
_RS02915
RR42_RS02920: RR42_RS02920 - hypothetical protein, at 651,518 to 651,892
_RS02920
RR42_RS02925: RR42_RS02925 - membrane protein, at 652,034 to 652,945
_RS02925
Position (kb) 650
651
652 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 649.690 kb on + strand, within RR42_RS02910 at 649.888 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.050 kb on + strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.051 kb on - strand, within RR42_RS02910 at 650.248 kb on - strand at 650.364 kb on + strand at 650.364 kb on + strand at 650.365 kb on - strand at 650.365 kb on - strand at 650.368 kb on + strand at 650.368 kb on + strand at 650.369 kb on - strand at 650.369 kb on - strand at 650.369 kb on - strand at 650.403 kb on + strand at 650.426 kb on + strand at 650.682 kb on - strand, within RR42_RS02915 at 650.682 kb on - strand, within RR42_RS02915 at 650.682 kb on - strand, within RR42_RS02915 at 650.750 kb on - strand, within RR42_RS02915 at 650.788 kb on + strand, within RR42_RS02915 at 650.788 kb on + strand, within RR42_RS02915 at 650.788 kb on + strand, within RR42_RS02915 at 650.966 kb on + strand, within RR42_RS02915 at 650.966 kb on + strand, within RR42_RS02915 at 650.967 kb on - strand, within RR42_RS02915 at 650.976 kb on + strand, within RR42_RS02915 at 651.056 kb on + strand, within RR42_RS02915 at 651.223 kb on + strand, within RR42_RS02915 at 651.266 kb on + strand, within RR42_RS02915 at 651.377 kb on + strand at 651.378 kb on - strand at 651.465 kb on - strand at 651.649 kb on - strand, within RR42_RS02920 at 651.649 kb on - strand, within RR42_RS02920 at 651.652 kb on - strand, within RR42_RS02920 at 651.663 kb on + strand, within RR42_RS02920 at 651.663 kb on + strand, within RR42_RS02920 at 651.684 kb on - strand, within RR42_RS02920 at 651.705 kb on + strand, within RR42_RS02920 at 651.705 kb on + strand, within RR42_RS02920 at 651.706 kb on - strand, within RR42_RS02920 at 651.706 kb on - strand, within RR42_RS02920 at 651.706 kb on - strand, within RR42_RS02920 at 651.723 kb on + strand, within RR42_RS02920 at 651.723 kb on + strand, within RR42_RS02920 at 651.741 kb on + strand, within RR42_RS02920 at 651.925 kb on - strand at 651.925 kb on - strand at 651.947 kb on + strand at 651.947 kb on + strand at 651.947 kb on + strand at 651.948 kb on - strand at 651.961 kb on + strand at 651.961 kb on + strand at 651.961 kb on + strand at 651.962 kb on - strand at 651.962 kb on - strand at 651.962 kb on - strand at 651.980 kb on - strand at 652.249 kb on + strand, within RR42_RS02925 at 652.249 kb on + strand, within RR42_RS02925 at 652.250 kb on - strand, within RR42_RS02925
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 649,690 + RR42_RS02910 0.58 -0.0 649,888 + RR42_RS02910 0.74 +0.5 650,050 + RR42_RS02910 0.87 -0.5 650,050 + RR42_RS02910 0.87 -0.7 650,050 + RR42_RS02910 0.87 -0.3 650,050 + RR42_RS02910 0.87 -0.7 650,050 + RR42_RS02910 0.87 -0.4 650,050 + RR42_RS02910 0.87 -0.0 650,050 + RR42_RS02910 0.87 -0.4 650,051 - RR42_RS02910 0.87 -1.3 650,051 - RR42_RS02910 0.87 -3.0 650,051 - RR42_RS02910 0.87 -0.4 650,051 - RR42_RS02910 0.87 -1.0 650,051 - RR42_RS02910 0.87 -0.2 650,051 - RR42_RS02910 0.87 -1.1 650,248 - -1.9 650,364 + +0.5 650,364 + -0.5 650,365 - -0.5 650,365 - -1.5 650,368 + -2.9 650,368 + -1.1 650,369 - -0.7 650,369 - -0.1 650,369 - -0.9 650,403 + +1.0 650,426 + -1.3 650,682 - RR42_RS02915 0.24 -1.0 650,682 - RR42_RS02915 0.24 -0.0 650,682 - RR42_RS02915 0.24 -2.6 650,750 - RR42_RS02915 0.31 +0.0 650,788 + RR42_RS02915 0.34 +0.1 650,788 + RR42_RS02915 0.34 +0.4 650,788 + RR42_RS02915 0.34 -1.1 650,966 + RR42_RS02915 0.51 -0.3 650,966 + RR42_RS02915 0.51 +0.4 650,967 - RR42_RS02915 0.52 -0.2 650,976 + RR42_RS02915 0.52 -1.5 651,056 + RR42_RS02915 0.60 -0.7 651,223 + RR42_RS02915 0.76 -0.8 651,266 + RR42_RS02915 0.81 -0.0 651,377 + +0.3 651,378 - -0.1 651,465 - +1.2 651,649 - RR42_RS02920 0.35 -0.8 651,649 - RR42_RS02920 0.35 +0.4 651,652 - RR42_RS02920 0.36 -0.5 651,663 + RR42_RS02920 0.39 -0.5 651,663 + RR42_RS02920 0.39 +0.2 651,684 - RR42_RS02920 0.44 -0.4 651,705 + RR42_RS02920 0.50 +0.7 651,705 + RR42_RS02920 0.50 -1.3 651,706 - RR42_RS02920 0.50 -0.4 651,706 - RR42_RS02920 0.50 -1.0 651,706 - RR42_RS02920 0.50 -1.6 651,723 + RR42_RS02920 0.55 +0.1 651,723 + RR42_RS02920 0.55 +0.9 651,741 + RR42_RS02920 0.59 -0.8 651,925 - -1.1 651,925 - -0.7 651,947 + +1.2 651,947 + -1.1 651,947 + +2.0 651,948 - -1.6 651,961 + -0.2 651,961 + -1.0 651,961 + -1.3 651,962 - -0.4 651,962 - +0.1 651,962 - -1.0 651,980 - -0.4 652,249 + RR42_RS02925 0.24 -0.6 652,249 + RR42_RS02925 0.24 -0.4 652,250 - RR42_RS02925 0.24 -2.1
Or see this region's nucleotide sequence