Experiment: casaminos (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02900 and RR42_RS02905 are separated by 220 nucleotides RR42_RS02905 and RR42_RS02910 are separated by 34 nucleotides
RR42_RS02900: RR42_RS02900 - LysR family transcriptional regulator, at 646,769 to 647,710
_RS02900
RR42_RS02905: RR42_RS02905 - MFS transporter, at 647,931 to 648,929
_RS02905
RR42_RS02910: RR42_RS02910 - 2-aminoadipate aminotransferase, at 648,964 to 650,214
_RS02910
Position (kb) 647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 646.965 kb on + strand, within RR42_RS02900 at 647.025 kb on - strand, within RR42_RS02900 at 647.046 kb on + strand, within RR42_RS02900 at 647.047 kb on - strand, within RR42_RS02900 at 647.250 kb on + strand, within RR42_RS02900 at 647.283 kb on + strand, within RR42_RS02900 at 647.283 kb on + strand, within RR42_RS02900 at 647.284 kb on - strand, within RR42_RS02900 at 647.489 kb on + strand, within RR42_RS02900 at 647.496 kb on + strand, within RR42_RS02900 at 647.496 kb on + strand, within RR42_RS02900 at 647.497 kb on - strand, within RR42_RS02900 at 647.502 kb on + strand, within RR42_RS02900 at 647.503 kb on - strand, within RR42_RS02900 at 647.791 kb on + strand at 647.791 kb on + strand at 647.791 kb on + strand at 647.791 kb on + strand at 648.024 kb on - strand at 648.201 kb on + strand, within RR42_RS02905 at 648.201 kb on + strand, within RR42_RS02905 at 648.252 kb on + strand, within RR42_RS02905 at 648.388 kb on - strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.505 kb on - strand, within RR42_RS02905 at 648.566 kb on + strand, within RR42_RS02905 at 648.624 kb on - strand, within RR42_RS02905 at 649.045 kb on + strand at 649.046 kb on - strand at 649.171 kb on + strand, within RR42_RS02910 at 649.690 kb on + strand, within RR42_RS02910 at 649.888 kb on + strand, within RR42_RS02910
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (N) remove 646,965 + RR42_RS02900 0.21 -1.7 647,025 - RR42_RS02900 0.27 -1.7 647,046 + RR42_RS02900 0.29 -1.0 647,047 - RR42_RS02900 0.30 +0.2 647,250 + RR42_RS02900 0.51 -0.0 647,283 + RR42_RS02900 0.55 -0.3 647,283 + RR42_RS02900 0.55 +0.6 647,284 - RR42_RS02900 0.55 -0.4 647,489 + RR42_RS02900 0.76 -1.6 647,496 + RR42_RS02900 0.77 -0.4 647,496 + RR42_RS02900 0.77 -0.4 647,497 - RR42_RS02900 0.77 -1.2 647,502 + RR42_RS02900 0.78 -0.1 647,503 - RR42_RS02900 0.78 -1.0 647,791 + +1.1 647,791 + -0.0 647,791 + -0.2 647,791 + -0.0 648,024 - -0.3 648,201 + RR42_RS02905 0.27 -0.3 648,201 + RR42_RS02905 0.27 +2.7 648,252 + RR42_RS02905 0.32 -2.5 648,388 - RR42_RS02905 0.46 +0.7 648,504 + RR42_RS02905 0.57 +0.5 648,504 + RR42_RS02905 0.57 -3.5 648,504 + RR42_RS02905 0.57 -0.8 648,505 - RR42_RS02905 0.57 -2.0 648,566 + RR42_RS02905 0.64 -0.9 648,624 - RR42_RS02905 0.69 -0.4 649,045 + -0.4 649,046 - +0.2 649,171 + RR42_RS02910 0.17 -2.0 649,690 + RR42_RS02910 0.58 -0.0 649,888 + RR42_RS02910 0.74 +0.5
Or see this region's nucleotide sequence