Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03244

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0005 mg/ml
3,409,308	+		CCNA_03243	0.39	+1.5
3,409,309	+		CCNA_03243	0.39	-0.5
3,409,333	-		CCNA_03243	0.41	-0.3
3,409,350	+		CCNA_03243	0.42	-0.5
3,409,373	-		CCNA_03243	0.44	+2.5
3,409,378	-		CCNA_03243	0.44	-1.4
3,409,378	-		CCNA_03243	0.44	+0.7
3,409,378	-		CCNA_03243	0.44	-0.4
3,409,384	+		CCNA_03243	0.44	-0.2
3,409,423	-		CCNA_03243	0.47	+0.0
3,409,423	-		CCNA_03243	0.47	-1.4
3,409,423	-		CCNA_03243	0.47	+1.4
3,409,424	-		CCNA_03243	0.47	-1.8
3,409,437	-		CCNA_03243	0.48	+0.9
3,409,465	-		CCNA_03243	0.50	+0.2
3,409,483	+		CCNA_03243	0.51	+1.2
3,409,486	-		CCNA_03243	0.51	-1.4
3,409,491	-		CCNA_03243	0.51	+1.4
3,409,521	+		CCNA_03243	0.53	-1.0
3,409,526	+		CCNA_03243	0.54	-0.6
3,409,550	+		CCNA_03243	0.55	-1.0
3,409,619	-		CCNA_03243	0.60	-0.1
3,409,652	+		CCNA_03243	0.62	+1.2
3,409,671	-		CCNA_03243	0.63	+1.2
3,409,678	+		CCNA_03243	0.64	-0.8
3,409,692	-		CCNA_03243	0.65	-2.3
3,409,704	-		CCNA_03243	0.66	+0.2
3,409,704	-		CCNA_03243	0.66	-1.7
3,409,709	-		CCNA_03243	0.66	-0.7
3,409,748	+		CCNA_03243	0.69	+0.5
3,409,748	+		CCNA_03243	0.69	-0.6
3,409,759	+		CCNA_03243	0.69	-0.5
3,409,765	-		CCNA_03243	0.70	-0.7
3,409,794	-		CCNA_03243	0.72	-1.3
3,409,798	+		CCNA_03243	0.72	+0.4
3,409,798	+		CCNA_03243	0.72	-0.3
3,409,798	+		CCNA_03243	0.72	+1.1
3,409,856	+		CCNA_03243	0.76	+0.4
3,409,878	+		CCNA_03243	0.77	-0.3
3,409,892	+		CCNA_03243	0.78	-0.1
3,409,900	+		CCNA_03243	0.79	-2.2
3,409,908	-		CCNA_03243	0.79	-1.3
3,409,908	-		CCNA_03243	0.79	+0.5
3,409,953	+		CCNA_03243	0.82	-0.9
3,409,961	-		CCNA_03243	0.83	-0.4
3,409,963	+		CCNA_03243	0.83	-1.5
3,410,059	+		CCNA_03243	0.89	-2.0
3,410,067	-		CCNA_03243	0.90	+0.1
3,410,107	-				+1.1
3,410,107	-				-1.5
3,410,111	-				-1.5
3,410,133	-				+0.9
3,410,150	+				-0.5
3,410,163	-				-0.1
3,410,173	-				-0.7
3,410,181	+				-1.6
3,410,192	+				-1.0
3,410,204	+				-0.4
3,410,205	+				+0.8
3,410,214	+				+0.4
3,410,222	-				+1.2
3,410,261	+				-1.9
3,410,261	+				+1.6
3,410,316	-				-1.8
3,410,365	+		CCNA_03244	0.13	-0.8
3,410,374	-		CCNA_03244	0.15	-0.9
3,410,428	+		CCNA_03244	0.23	-2.5
3,410,463	+		CCNA_03244	0.28	-1.7
3,410,525	-		CCNA_03244	0.37	-1.8
3,410,558	+		CCNA_03244	0.42	-1.0
3,410,566	-		CCNA_03244	0.43	-2.3
3,410,599	+		CCNA_03244	0.48	-2.1
3,410,599	+		CCNA_03244	0.48	-1.2
3,410,600	+		CCNA_03244	0.48	-1.0
3,410,600	+		CCNA_03244	0.48	+0.0
3,410,600	+		CCNA_03244	0.48	+0.9
3,410,600	+		CCNA_03244	0.48	-0.3
3,410,600	+		CCNA_03244	0.48	-0.3
3,410,607	-		CCNA_03244	0.49	-0.8
3,410,608	-		CCNA_03244	0.50	-0.6
3,410,655	+		CCNA_03244	0.57	+1.2
3,410,655	+		CCNA_03244	0.57	+1.1
3,410,663	-		CCNA_03244	0.58	-1.4
3,410,663	-		CCNA_03244	0.58	-0.4
3,410,663	-		CCNA_03244	0.58	-0.6
3,410,666	+		CCNA_03244	0.58	+0.8
3,410,666	+		CCNA_03244	0.58	-0.6
3,410,666	+		CCNA_03244	0.58	-0.6
3,410,666	+		CCNA_03244	0.58	-1.2
3,410,666	+		CCNA_03244	0.58	-0.5
3,410,666	+		CCNA_03244	0.58	+0.8
3,410,666	+		CCNA_03244	0.58	+1.0
3,410,666	+		CCNA_03244	0.58	-1.7
3,410,666	+		CCNA_03244	0.58	-1.1
3,410,666	+		CCNA_03244	0.58	-0.9
3,410,666	+		CCNA_03244	0.58	-0.3
3,410,666	+		CCNA_03244	0.58	-1.3
3,410,666	+		CCNA_03244	0.58	+1.8
3,410,674	-		CCNA_03244	0.59	-0.5
3,410,674	-		CCNA_03244	0.59	-1.2
3,410,674	-		CCNA_03244	0.59	+0.6
3,410,674	-		CCNA_03244	0.59	+0.6
3,410,674	-		CCNA_03244	0.59	+0.3
3,410,674	-		CCNA_03244	0.59	-1.2
3,410,674	-		CCNA_03244	0.59	+0.1
3,410,681	+		CCNA_03244	0.60	-0.6
3,410,681	+		CCNA_03244	0.60	-1.5
3,410,699	-		CCNA_03244	0.63	-2.5
3,410,749	-		CCNA_03244	0.71	-1.2
3,410,763	-		CCNA_03244	0.73	-1.4
3,410,848	+		CCNA_03244	0.85	-0.8
3,410,857	+		CCNA_03244	0.87	+0.1
3,410,869	+		CCNA_03244	0.88	-2.9
3,410,912	+				+1.2
3,410,912	+				-2.1
3,410,920	-				+0.2
3,410,947	-				+0.6
3,411,020	+				+0.7
3,411,028	-				-2.4
3,411,064	-				-2.1
3,411,107	+				-1.1
3,411,131	+				-1.7
3,411,141	+				-1.8
3,411,141	+				-0.6
3,411,141	+				-1.0
3,411,149	-		CCNA_03245	0.10	-0.7
3,411,149	-		CCNA_03245	0.10	-0.7
3,411,156	+		CCNA_03245	0.11	-3.0
3,411,164	-		CCNA_03245	0.11	-1.2
3,411,164	-		CCNA_03245	0.11	+1.2
3,411,174	+		CCNA_03245	0.12	+0.1
3,411,174	+		CCNA_03245	0.12	-1.5
3,411,174	+		CCNA_03245	0.12	+1.8
3,411,176	+		CCNA_03245	0.12	+3.4
3,411,233	-		CCNA_03245	0.16	-0.1
3,411,262	+		CCNA_03245	0.19	-0.9
3,411,262	+		CCNA_03245	0.19	-1.4
3,411,278	+				+1.8
3,411,317	-		CCNA_03245	0.23	-0.2
3,411,368	+		CCNA_03245	0.27	-1.8
3,411,378	+		CCNA_03245	0.27	-0.3
3,411,380	+		CCNA_03245	0.27	+0.3
3,411,386	-		CCNA_03245	0.28	-1.6
3,411,386	-		CCNA_03245	0.28	+0.9
3,411,386	-		CCNA_03245	0.28	-0.9
3,411,512	+		CCNA_03245	0.37	+0.2
3,411,556	+		CCNA_03245	0.41	-0.6
3,411,556	-		CCNA_03245	0.41	+1.2
3,411,564	-		CCNA_03245	0.41	-1.6
3,411,564	-		CCNA_03245	0.41	+1.8
3,411,564	-		CCNA_03245	0.41	-1.3
3,411,564	-		CCNA_03245	0.41	-0.2
3,411,575	+		CCNA_03245	0.42	+0.2
3,411,594	+		CCNA_03245	0.44	+0.0
3,411,594	+		CCNA_03245	0.44	-1.9
3,411,602	-		CCNA_03245	0.44	+0.2
3,411,602	-		CCNA_03245	0.44	-1.4
3,411,629	-		CCNA_03245	0.46	+0.0
3,411,727	-		CCNA_03245	0.54	-1.0
3,411,801	-		CCNA_03245	0.59	-0.2
3,411,801	-		CCNA_03245	0.59	-1.8
3,411,803	+		CCNA_03245	0.59	-0.8
3,411,803	+		CCNA_03245	0.59	+0.4
3,411,811	-		CCNA_03245	0.60	+0.0
3,411,811	-		CCNA_03245	0.60	-1.3
3,411,830	-		CCNA_03245	0.61	+0.6
3,411,851	+		CCNA_03245	0.63	-0.4
3,411,859	-		CCNA_03245	0.64	+0.2
3,411,869	-		CCNA_03245	0.64	+0.8
3,411,872	+		CCNA_03245	0.64	-2.4
3,411,875	-				+1.0
3,411,880	-		CCNA_03245	0.65	+0.5
3,411,890	-		CCNA_03245	0.66	+0.2
3,411,917	+		CCNA_03245	0.68	-0.0
3,411,925	-		CCNA_03245	0.68	-1.8
3,411,930	+		CCNA_03245	0.69	+1.8