Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02940

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0005 mg/ml
3,098,799	+		CCNA_02938	0.17	-1.3
3,098,807	-		CCNA_02938	0.19	-0.1
3,098,863	+		CCNA_02938	0.28	-0.5
3,098,887	+		CCNA_02938	0.33	+0.5
3,098,895	-		CCNA_02938	0.34	+2.7
3,098,913	-		CCNA_02938	0.37	-0.3
3,098,931	-		CCNA_02938	0.40	+0.3
3,098,942	-		CCNA_02938	0.42	-0.3
3,098,942	-		CCNA_02938	0.42	+3.0
3,098,947	+		CCNA_02938	0.43	-2.3
3,098,954	+		CCNA_02938	0.44	+0.7
3,098,991	+		CCNA_02938	0.51	+0.6
3,099,032	+		CCNA_02938	0.58	-1.9
3,099,033	+		CCNA_02938	0.58	-0.8
3,099,070	+		CCNA_02938	0.64	-0.3
3,099,071	+		CCNA_02938	0.65	-1.0
3,099,099	+		CCNA_02938	0.69	+0.7
3,099,099	+		CCNA_02938	0.69	+3.7
3,099,099	+		CCNA_02938	0.69	+2.3
3,099,100	+		CCNA_02938	0.70	+0.2
3,099,109	+		CCNA_02938	0.71	+0.5
3,099,164	+		CCNA_02938	0.81	+0.7
3,099,224	+				-0.3
3,099,236	-				-1.8
3,099,277	+				+0.3
3,099,283	-				-1.9
3,099,285	-				-0.6
3,099,311	+				+1.7
3,099,311	+				-0.2
3,099,318	-				-0.3
3,099,319	-				-1.1
3,099,410	+				+1.2
3,099,410	+				-1.5
3,099,419	+				+1.1
3,099,459	+				+1.2
3,099,501	+		CCNA_02939	0.20	-0.1
3,099,501	+		CCNA_02939	0.20	+0.5
3,099,506	+		CCNA_02939	0.21	+1.2
3,099,509	-		CCNA_02939	0.22	+0.7
3,099,514	-		CCNA_02939	0.23	+0.2
3,099,514	-		CCNA_02939	0.23	-0.3
3,099,537	+		CCNA_02939	0.30	+0.5
3,099,593	-		CCNA_02939	0.45	+0.0
3,099,640	+		CCNA_02939	0.59	-0.8
3,099,681	+		CCNA_02939	0.70	-1.5
3,099,691	+		CCNA_02939	0.73	+0.5
3,099,708	-		CCNA_02939	0.78	-1.1
3,099,709	-		CCNA_02939	0.78	-0.8
3,099,740	-		CCNA_02939	0.87	+2.4
3,099,837	+				-1.0
3,099,887	+				-2.2
3,099,899	+				+0.8
3,099,899	+				+0.4
3,099,931	-				-0.9
3,099,936	-				-0.5
3,099,949	+		CCNA_02940	0.10	+0.7
3,099,949	+		CCNA_02940	0.10	-1.9
3,099,957	-		CCNA_02940	0.11	-1.3
3,099,963	-		CCNA_02940	0.11	-1.1
3,099,997	-		CCNA_02940	0.13	+0.7
3,100,020	+		CCNA_02940	0.15	+0.2
3,100,070	+		CCNA_02940	0.18	-1.1
3,100,077	+		CCNA_02940	0.18	-0.9
3,100,098	-		CCNA_02940	0.20	+0.1
3,100,163	+		CCNA_02940	0.24	-2.4
3,100,163	+		CCNA_02940	0.24	-1.1
3,100,163	+		CCNA_02940	0.24	-1.0
3,100,163	+		CCNA_02940	0.24	+1.2
3,100,171	-		CCNA_02940	0.24	+0.5
3,100,171	-		CCNA_02940	0.24	+1.2
3,100,171	-		CCNA_02940	0.24	-1.2
3,100,171	-		CCNA_02940	0.24	-1.5
3,100,173	+		CCNA_02940	0.24	-0.8
3,100,173	+		CCNA_02940	0.24	-1.0
3,100,173	+		CCNA_02940	0.24	+1.0
3,100,181	-		CCNA_02940	0.25	-1.1
3,100,181	-		CCNA_02940	0.25	-0.2
3,100,190	+		CCNA_02940	0.25	+2.8
3,100,252	-		CCNA_02940	0.29	+0.9
3,100,277	-		CCNA_02940	0.31	-1.7
3,100,323	+		CCNA_02940	0.34	+0.6
3,100,323	+		CCNA_02940	0.34	-1.2
3,100,323	+		CCNA_02940	0.34	+0.1
3,100,323	+		CCNA_02940	0.34	-0.7
3,100,323	+		CCNA_02940	0.34	-1.2
3,100,323	+		CCNA_02940	0.34	-1.6
3,100,331	-		CCNA_02940	0.34	+2.8
3,100,331	-		CCNA_02940	0.34	-0.2
3,100,345	+		CCNA_02940	0.35	-1.8
3,100,380	-		CCNA_02940	0.37	+0.8
3,100,472	+		CCNA_02940	0.43	-2.1
3,100,477	+		CCNA_02940	0.43	-1.9
3,100,494	-		CCNA_02940	0.44	+0.7
3,100,502	+		CCNA_02940	0.45	-0.1
3,100,502	+		CCNA_02940	0.45	-1.8
3,100,502	+		CCNA_02940	0.45	-1.4
3,100,502	+		CCNA_02940	0.45	-1.6
3,100,502	+		CCNA_02940	0.45	-0.1
3,100,502	+		CCNA_02940	0.45	-0.7
3,100,510	-		CCNA_02940	0.45	-0.0
3,100,510	-		CCNA_02940	0.45	-1.2
3,100,510	-		CCNA_02940	0.45	+1.4
3,100,512	+		CCNA_02940	0.45	-0.1
3,100,546	-		CCNA_02940	0.47	+0.5
3,100,566	-		CCNA_02940	0.49	-1.2
3,100,568	-		CCNA_02940	0.49	+1.4
3,100,581	+		CCNA_02940	0.50	+0.3
3,100,622	-		CCNA_02940	0.52	-0.6
3,100,647	-		CCNA_02940	0.54	-1.1
3,100,671	+		CCNA_02940	0.55	-0.5
3,100,697	+		CCNA_02940	0.57	-0.4
3,100,705	-		CCNA_02940	0.57	-0.9
3,100,710	-		CCNA_02940	0.58	-1.3
3,100,759	-		CCNA_02940	0.61	-1.3
3,100,767	-		CCNA_02940	0.61	+0.5
3,100,788	-		CCNA_02940	0.63	-1.7
3,100,790	-		CCNA_02940	0.63	-0.1
3,100,843	+		CCNA_02940	0.66	-1.5
3,100,843	+		CCNA_02940	0.66	+0.5
3,100,853	+		CCNA_02940	0.67	-0.6
3,101,009	-		CCNA_02940	0.76	-0.3
3,101,040	+		CCNA_02940	0.78	-0.2
3,101,076	+		CCNA_02940	0.80	-0.5
3,101,094	+		CCNA_02940	0.82	-0.1
3,101,160	+		CCNA_02940	0.86	+1.6
3,101,187	+		CCNA_02940	0.87	+0.3
3,101,188	+		CCNA_02940	0.87	-0.5
3,101,201	-		CCNA_02940	0.88	-0.7
3,101,209	-		CCNA_02940	0.89	+1.2
3,101,211	+		CCNA_02940	0.89	-0.2
3,101,211	+		CCNA_02940	0.89	-1.6
3,101,213	-		CCNA_02940	0.89	-0.9
3,101,214	-		CCNA_02940	0.89	-0.4
3,101,214	-		CCNA_02940	0.89	-0.3
3,101,214	-		CCNA_02940	0.89	-0.7
3,101,256	+				+0.0
3,101,266	+				-1.7
3,101,266	+				+0.4
3,101,274	+				-0.3
3,101,274	-				+1.4
3,101,296	-				-2.7
3,101,296	-				+0.3
3,101,337	+				+0.4
3,101,347	+				+0.8
3,101,357	+				-0.3
3,101,357	+				-0.2
3,101,400	+				-0.4
3,101,413	-				-1.8
3,101,413	-				-1.1
3,101,427	+				-0.6
3,101,479	+				+1.7
3,101,485	-				+0.5
3,101,702	+		CCNA_02941	0.34	+2.9
3,101,702	+		CCNA_02941	0.34	+3.4
3,101,728	-		CCNA_02941	0.39	-0.0
3,101,787	-		CCNA_02941	0.51	+0.5
3,101,800	+				+3.0
3,101,857	+		CCNA_02941	0.66	+1.9
3,101,905	+		CCNA_02941	0.76	+0.9
3,101,905	+		CCNA_02941	0.76	+1.9
3,102,059	+				+1.1
3,102,161	-				-0.6
3,102,174	+				+1.0