Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02872

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0005 mg/ml
3,021,020	-		CCNA_02870	0.60	+0.3
3,021,037	+				+2.5
3,021,057	+		CCNA_02870	0.69	+0.0
3,021,062	+		CCNA_02870	0.71	+0.4
3,021,070	-		CCNA_02870	0.72	-0.3
3,021,077	-		CCNA_02870	0.74	-1.0
3,021,077	-		CCNA_02870	0.74	-0.4
3,021,090	-		CCNA_02870	0.77	-1.8
3,021,111	-				+2.5
3,021,205	-				+1.1
3,021,205	-				+0.3
3,021,205	-				+2.0
3,021,277	-		CCNA_02871	0.19	+0.0
3,021,292	+		CCNA_02871	0.23	+0.6
3,021,318	-		CCNA_02871	0.30	-1.6
3,021,332	+		CCNA_02871	0.33	-0.9
3,021,332	+		CCNA_02871	0.33	+0.9
3,021,340	-		CCNA_02871	0.35	+0.2
3,021,359	-		CCNA_02871	0.40	-0.8
3,021,359	-		CCNA_02871	0.40	-1.1
3,021,373	+		CCNA_02871	0.43	+0.4
3,021,373	+		CCNA_02871	0.43	-0.3
3,021,381	-		CCNA_02871	0.45	-0.5
3,021,401	+		CCNA_02871	0.50	+1.1
3,021,404	-		CCNA_02871	0.51	-0.6
3,021,409	-		CCNA_02871	0.52	-0.6
3,021,467	+		CCNA_02871	0.67	+0.7
3,021,485	-		CCNA_02871	0.71	+0.5
3,021,552	+		CCNA_02871	0.88	-1.8
3,021,560	-				-0.6
3,021,573	+				-1.1
3,021,635	+		CCNA_03882	0.14	-0.5
3,021,742	+		CCNA_03882	0.52	-0.2
3,021,750	-		CCNA_03882	0.55	-0.9
3,021,750	-		CCNA_03882	0.55	-0.0
3,021,790	+		CCNA_03882	0.69	+1.8
3,021,807	-		CCNA_03882	0.75	+0.4
3,021,847	+		CCNA_03882	0.89	+0.2
3,021,858	+				+0.4
3,021,858	+				-0.2
3,021,858	+				-0.5
3,021,865	+				-0.7
3,021,872	+				+1.7
3,021,873	-				+0.0
3,021,944	+				-1.6
3,021,957	-				-0.3
3,021,993	+				-1.0
3,022,019	-				+0.2
3,022,032	+				+1.8
3,022,041	+				-0.8
3,022,058	+				-0.8
3,022,066	-				-0.8
3,022,086	+				-0.5
3,022,089	+				+0.7
3,022,089	+				-0.7
3,022,089	+				+0.8
3,022,089	-				-0.6
3,022,097	-				-0.2
3,022,097	-				-0.5
3,022,097	-				-1.3
3,022,097	-				-0.7
3,022,162	+		CCNA_02872	0.12	-0.3
3,022,162	+		CCNA_02872	0.12	+0.6
3,022,192	+		CCNA_02872	0.14	+0.2
3,022,202	+		CCNA_02872	0.15	-1.2
3,022,224	+		CCNA_02872	0.17	+1.1
3,022,232	-		CCNA_02872	0.17	+0.5
3,022,267	+		CCNA_02872	0.20	+0.4
3,022,311	+		CCNA_02872	0.24	+1.2
3,022,311	+		CCNA_02872	0.24	-1.2
3,022,375	+		CCNA_02872	0.29	-1.0
3,022,375	+		CCNA_02872	0.29	+0.0
3,022,375	+		CCNA_02872	0.29	-2.0
3,022,381	-		CCNA_02872	0.30	-1.0
3,022,383	-		CCNA_02872	0.30	-0.3
3,022,389	+		CCNA_02872	0.30	+0.5
3,022,394	+		CCNA_02872	0.31	+0.8
3,022,394	+		CCNA_02872	0.31	-1.3
3,022,471	+		CCNA_02872	0.37	+0.8
3,022,478	+		CCNA_02872	0.38	-0.0
3,022,479	-		CCNA_02872	0.38	-0.3
3,022,503	+		CCNA_02872	0.40	-1.0
3,022,511	-		CCNA_02872	0.40	+0.0
3,022,511	-		CCNA_02872	0.40	-0.0
3,022,516	-		CCNA_02872	0.41	+2.0
3,022,526	-		CCNA_02872	0.42	+2.8
3,022,526	-		CCNA_02872	0.42	+1.0
3,022,547	+		CCNA_02872	0.43	+0.4
3,022,590	+		CCNA_02872	0.47	+0.9
3,022,626	+		CCNA_02872	0.50	+0.5
3,022,636	+		CCNA_02872	0.51	+0.5
3,022,637	+		CCNA_02872	0.51	-1.0
3,022,637	+		CCNA_02872	0.51	+0.8
3,022,644	-		CCNA_02872	0.51	-1.1
3,022,658	+		CCNA_02872	0.52	-0.2
3,022,659	+		CCNA_02872	0.52	-1.5
3,022,666	-		CCNA_02872	0.53	-0.2
3,022,667	-		CCNA_02872	0.53	-0.5
3,022,690	+		CCNA_02872	0.55	+0.8
3,022,690	+		CCNA_02872	0.55	-0.5
3,022,698	-		CCNA_02872	0.56	-0.1
3,022,698	-		CCNA_02872	0.56	-1.0
3,022,710	+		CCNA_02872	0.57	+0.5
3,022,755	+		CCNA_02872	0.60	+1.3
3,022,756	-		CCNA_02872	0.60	-0.4
3,022,756	-		CCNA_02872	0.60	+0.2
3,022,763	-		CCNA_02872	0.61	+0.1
3,022,828	-		CCNA_02872	0.66	+0.2
3,022,867	-		CCNA_02872	0.69	+1.8
3,022,867	-				+4.1
3,022,920	-		CCNA_02872	0.74	+0.5
3,022,933	-		CCNA_02872	0.75	+0.7
3,022,949	+		CCNA_02872	0.76	+2.5
3,023,004	-		CCNA_02872	0.81	-0.8
3,023,055	-		CCNA_02872	0.85	+1.1
3,023,065	-		CCNA_02872	0.86	+0.0
3,023,065	-		CCNA_02872	0.86	-1.9
3,023,088	-		CCNA_02872	0.88	+1.8
3,023,121	-				-0.8
3,023,122	+				+2.0
3,023,178	-				-1.2
3,023,254	-				-1.1
3,023,261	-				-1.1
3,023,263	+				-0.2
3,023,268	-				+0.7
3,023,347	+				+1.5
3,023,442	+				-1.4
3,023,447	+				-1.5
3,023,451	+				+0.7
3,023,451	+				-0.0
3,023,473	+		CCNA_02873	0.10	+0.7
3,023,502	+		CCNA_02873	0.18	+0.7
3,023,505	-		CCNA_02873	0.19	-1.3
3,023,509	+		CCNA_02873	0.20	-0.3
3,023,509	+		CCNA_02873	0.20	+0.0
3,023,544	+		CCNA_02873	0.30	+2.1
3,023,544	+		CCNA_02873	0.30	+2.1
3,023,552	-		CCNA_02873	0.32	-0.9
3,023,574	-		CCNA_02873	0.38	+1.3
3,023,600	+				+1.3
3,023,617	+		CCNA_02873	0.50	+0.6
3,023,623	+		CCNA_02873	0.52	+0.5
3,023,638	+		CCNA_02873	0.56	+1.1
3,023,660	+		CCNA_02873	0.62	-0.3
3,023,660	+		CCNA_02873	0.62	+0.5
3,023,668	-		CCNA_02873	0.64	+0.0
3,023,688	+		CCNA_02873	0.69	+1.8
3,023,696	-		CCNA_02873	0.72	-0.0
3,023,716	+		CCNA_02873	0.77	+0.4
3,023,755	+		CCNA_02873	0.88	-0.3
3,023,771	+				+1.2
3,023,777	-				+0.2
3,023,839	+		CCNA_02874	0.16	+0.3
3,023,839	+		CCNA_02874	0.16	-0.0
3,023,846	+		CCNA_02874	0.18	+0.5
3,023,847	-		CCNA_02874	0.18	+0.2
3,023,847	-				+1.5
3,023,847	-		CCNA_02874	0.18	+1.8
3,023,847	-		CCNA_02874	0.18	+0.8
3,023,871	+		CCNA_02874	0.24	-0.0
3,023,872	+		CCNA_02874	0.24	-0.6
3,023,887	+		CCNA_02874	0.28	+0.2
3,023,887	+		CCNA_02874	0.28	-0.3
3,023,897	+		CCNA_02874	0.30	+0.4
3,023,932	+		CCNA_02874	0.38	-0.7
3,023,940	-		CCNA_02874	0.40	+0.7
3,023,957	-		CCNA_02874	0.44	+0.7
3,023,959	-		CCNA_02874	0.45	-0.6
3,023,963	-		CCNA_02874	0.46	+0.8
3,024,001	+		CCNA_02874	0.55	+1.1
3,024,096	-		CCNA_02874	0.78	-0.6
3,024,106	-		CCNA_02874	0.80	-1.2
3,024,142	+		CCNA_02874	0.89	+1.3
3,024,142	+		CCNA_02874	0.89	+1.0
3,024,147	+				+0.1
3,024,150	-				+0.5
3,024,171	+				+2.1
3,024,177	-				-1.7
3,024,217	+				-0.7
3,024,217	+				+1.5
3,024,225	-		CCNA_02875	0.12	-0.7
3,024,236	+		CCNA_02875	0.15	-0.9