Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01769

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0005 mg/ml
1,895,406	-				+0.6
1,895,486	+		CCNA_01767	0.16	-0.0
1,895,497	+		CCNA_01767	0.19	+0.3
1,895,498	+		CCNA_01767	0.19	+1.0
1,895,507	+		CCNA_01767	0.21	-1.0
1,895,515	-		CCNA_01767	0.23	-0.2
1,895,578	+		CCNA_01767	0.39	+1.1
1,895,675	+		CCNA_01767	0.63	+0.2
1,895,679	-				+1.4
1,895,709	-		CCNA_01767	0.72	+1.4
1,895,728	+		CCNA_01767	0.76	-1.1
1,895,736	-		CCNA_01767	0.78	-0.4
1,895,783	+				+0.5
1,895,783	+				-0.6
1,895,783	+				+0.9
1,895,783	+				-1.4
1,895,783	+				-1.9
1,895,791	-				-0.2
1,895,791	-				+1.7
1,895,791	-				+1.4
1,895,791	-				-1.9
1,895,845	-				+0.3
1,895,850	+				+1.0
1,895,858	-				+2.0
1,895,858	-				-0.1
1,895,860	+				-1.2
1,895,881	+		CCNA_01768	0.12	+1.3
1,895,937	-		CCNA_01768	0.26	+0.2
1,895,970	-		CCNA_01768	0.34	+0.5
1,895,978	+		CCNA_01768	0.36	+0.3
1,895,988	+		CCNA_01768	0.39	-0.6
1,895,996	-				+1.7
1,895,996	-		CCNA_01768	0.41	+0.6
1,896,103	+		CCNA_01768	0.67	+0.4
1,896,103	+		CCNA_01768	0.67	-0.7
1,896,106	-		CCNA_01768	0.68	+0.2
1,896,106	-		CCNA_01768	0.68	-0.5
1,896,197	+				-0.7
1,896,215	+				+1.6
1,896,215	+				+1.5
1,896,313	+				-2.5
1,896,313	+				+1.2
1,896,325	+				-0.8
1,896,346	+				+0.4
1,896,354	-				+0.8
1,896,379	-				-1.8
1,896,384	-				-1.6
1,896,384	-				-1.5
1,896,385	-				-2.4
1,896,451	+				-2.0
1,896,459	-				-0.2
1,896,475	+				-1.4
1,896,482	-				-0.7
1,896,490	+				-1.2
1,896,523	-		CCNA_01769	0.11	-1.5
1,896,589	-		CCNA_01769	0.15	-1.0
1,896,619	+		CCNA_01769	0.17	-1.6
1,896,619	+		CCNA_01769	0.17	-0.4
1,896,627	-		CCNA_01769	0.17	-1.5
1,896,669	-		CCNA_01769	0.19	-1.9
1,896,724	+		CCNA_01769	0.22	-1.2
1,896,856	+		CCNA_01769	0.29	-0.2
1,896,893	+		CCNA_01769	0.31	+0.1
1,896,893	+		CCNA_01769	0.31	-1.0
1,896,901	-		CCNA_01769	0.32	-1.4
1,896,901	-		CCNA_01769	0.32	-0.8
1,896,992	+		CCNA_01769	0.37	+0.0
1,897,035	-		CCNA_01769	0.39	-1.4
1,897,052	+		CCNA_01769	0.40	-0.0
1,897,070	+		CCNA_01769	0.41	+1.0
1,897,114	-		CCNA_01769	0.43	-0.4
1,897,171	-		CCNA_01769	0.46	-1.4
1,897,223	-		CCNA_01769	0.49	-1.4
1,897,265	+		CCNA_01769	0.51	+0.3
1,897,265	+		CCNA_01769	0.51	-1.4
1,897,293	-		CCNA_01769	0.53	-1.3
1,897,331	+		CCNA_01769	0.55	+2.4
1,897,339	-		CCNA_01769	0.55	+0.2
1,897,368	-		CCNA_01769	0.57	+0.0
1,897,385	+		CCNA_01769	0.58	-1.4
1,897,385	+		CCNA_01769	0.58	+0.2
1,897,385	+		CCNA_01769	0.58	+0.3
1,897,393	-		CCNA_01769	0.58	-1.4
1,897,393	-		CCNA_01769	0.58	+1.4
1,897,400	+		CCNA_01769	0.58	-0.2
1,897,450	+		CCNA_01769	0.61	-0.2
1,897,453	-		CCNA_01769	0.61	-0.2
1,897,460	-		CCNA_01769	0.62	+0.7
1,897,505	+		CCNA_01769	0.64	+0.8
1,897,505	+		CCNA_01769	0.64	+0.3
1,897,513	-		CCNA_01769	0.64	-1.5
1,897,542	-		CCNA_01769	0.66	+1.2
1,897,558	+		CCNA_01769	0.67	-1.2
1,897,566	-		CCNA_01769	0.67	-2.3
1,897,628	-		CCNA_01769	0.71	-1.4
1,897,756	+		CCNA_01769	0.77	-1.3
1,897,756	+		CCNA_01769	0.77	-1.2
1,897,772	+		CCNA_01769	0.78	-1.6
1,897,785	-		CCNA_01769	0.79	-0.8
1,897,847	-		CCNA_01769	0.82	-1.1
1,897,850	+		CCNA_01769	0.83	+0.4
1,897,879	+		CCNA_01769	0.84	-0.8
1,897,887	-		CCNA_01769	0.85	+0.6
1,897,957	+		CCNA_01769	0.88	-2.3
1,897,988	+		CCNA_01769	0.90	-0.6
1,897,996	-				-0.7
1,897,996	-				-1.0
1,897,996	-				-1.8
1,897,996	-				-1.4
1,897,996	-				-0.4
1,897,996	-				-0.2
1,897,996	-				-0.9
1,898,039	+				-1.0
1,898,047	-				+2.0
1,898,087	+				+0.7
1,898,095	-				-1.6
1,898,113	-				-0.2
1,898,851	+		CCNA_01771	0.67	-2.1
1,898,949	+				+0.7
1,898,950	+				-0.2
1,898,961	+				-1.0
1,898,984	+				-0.6
1,898,987	-				-0.6
1,899,013	+				+1.2
1,899,030	+				-1.1
1,899,035	-				-0.5
1,899,171	+		CCNA_01772	0.36	-1.0